Wall clock time and date at job start Wed Apr 1 2020 03:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38001 * 120.82286 * 2 1 4 4 C 1.39120 * 119.26745 * 179.97438 * 3 2 1 5 5 O 1.35492 * 119.52869 * 180.02562 * 4 3 2 6 6 N 1.32439 * 120.94695 * 359.97261 * 4 3 2 7 7 C 1.31639 * 121.80206 * 359.74838 * 6 4 3 8 8 C 1.50700 * 119.68764 * 180.28793 * 7 6 4 9 9 C 1.39565 * 120.62021 * 0.54360 * 7 6 4 10 10 C 1.47622 * 120.49428 * 179.71893 * 9 7 6 11 11 O 1.21580 * 120.00057 * 269.72278 * 10 9 7 12 12 N 1.34775 * 119.99553 * 89.72493 * 10 9 7 13 13 C 1.46900 * 120.46117 * 180.02562 * 12 10 9 14 14 C 1.53349 * 108.74479 * 124.34262 * 13 12 10 15 15 C 1.52559 * 109.12733 * 52.25717 * 14 13 12 16 16 C 1.52963 * 114.05870 * 75.53963 * 15 14 13 17 17 N 1.47166 * 87.85376 * 139.44344 * 16 15 14 18 18 C 1.36936 * 136.00143 * 153.08248 * 17 16 15 19 19 H 1.07994 * 119.99869 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99903 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99863 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00052 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46936 * 89.99757 * 22 20 18 24 24 H 1.48502 * 109.47124 * 209.99971 * 22 20 18 25 25 H 1.48498 * 109.46664 * 329.99449 * 22 20 18 26 26 C 1.47170 * 87.99578 * 333.33681 * 17 16 15 27 27 C 1.52550 * 113.43531 * 302.67267 * 15 14 13 28 28 C 1.46887 * 120.46522 * 359.97438 * 12 10 9 29 29 H 1.08999 * 109.47087 * 270.02514 * 1 2 3 30 30 H 1.09001 * 109.47065 * 30.02436 * 1 2 3 31 31 H 1.08997 * 109.47609 * 150.02005 * 1 2 3 32 32 H 1.08003 * 120.36419 * 359.97438 * 3 2 1 33 33 H 0.96701 * 114.00358 * 89.99160 * 5 4 3 34 34 H 1.09001 * 109.47265 * 270.25034 * 8 7 6 35 35 H 1.08996 * 109.46968 * 30.25177 * 8 7 6 36 36 H 1.08998 * 109.47077 * 150.25547 * 8 7 6 37 37 H 1.08997 * 109.59040 * 4.56101 * 13 12 10 38 38 H 1.08995 * 109.58733 * 244.12120 * 13 12 10 39 39 H 1.09007 * 109.53130 * 292.36885 * 14 13 12 40 40 H 1.08996 * 109.58779 * 172.18987 * 14 13 12 41 41 H 1.09004 * 113.49269 * 24.69819 * 16 15 14 42 42 H 1.09006 * 113.49256 * 254.18848 * 16 15 14 43 43 H 0.97004 * 119.99747 * 180.02562 * 21 20 18 44 44 H 1.08999 * 113.48969 * 141.41363 * 26 17 16 45 45 H 1.08999 * 113.48708 * 271.91864 * 26 17 16 46 46 H 1.08997 * 109.53381 * 177.20989 * 27 15 14 47 47 H 1.09004 * 109.52572 * 297.42090 * 27 15 14 48 48 H 1.08998 * 109.59052 * 355.42705 * 28 12 10 49 49 H 1.09005 * 109.58621 * 115.86966 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1473 0.0005 5 8 4.3043 2.3077 0.0011 6 7 4.2547 -0.0066 0.0016 7 6 3.6204 -1.1601 0.0071 8 6 4.4080 -2.4449 0.0146 9 6 2.2255 -1.2043 0.0006 10 6 1.5170 -2.4994 0.0006 11 8 1.2258 -3.0330 -1.0523 12 7 1.1931 -3.0903 1.1678 13 6 0.4887 -4.3793 1.1797 14 6 1.3071 -5.3806 2.0038 15 6 1.6193 -4.7696 3.3664 16 6 0.4317 -4.7553 4.3302 17 7 1.3677 -5.1316 5.4017 18 6 1.4279 -4.9673 6.7598 19 1 0.6379 -4.4418 7.2757 20 6 2.5047 -5.4754 7.4734 21 7 3.4677 -6.1155 6.8445 22 14 2.5871 -5.2508 9.3260 23 1 1.9221 -6.3983 9.9938 24 1 4.0076 -5.1843 9.7539 25 1 1.8973 -3.9909 9.7029 26 6 2.2140 -5.7562 4.3723 27 6 2.3659 -3.4421 3.2793 28 6 1.5405 -2.4549 2.4458 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6935 2.1314 -0.0004 33 1 4.5069 2.6445 0.8846 34 1 4.6026 -2.7578 -1.0112 35 1 5.3541 -2.2880 0.5324 36 1 3.8366 -3.2182 0.5280 37 1 0.3818 -4.7468 0.1591 38 1 -0.4959 -4.2535 1.6301 39 1 2.2382 -5.6058 1.4836 40 1 0.7340 -6.2979 2.1385 41 1 -0.3124 -5.5220 4.1143 42 1 -0.0073 -3.7666 4.4643 43 1 4.2200 -6.4709 7.3432 44 1 3.2812 -5.6133 4.5419 45 1 1.9541 -6.7948 4.1678 46 1 2.5118 -3.0396 4.2817 47 1 3.3342 -3.5992 2.8041 48 1 2.1266 -1.5551 2.2591 49 1 0.6291 -2.1950 2.9843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035857189.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:01 Heat of formation + Delta-G solvation = -6.526985 kcal Electronic energy + Delta-G solvation = -31565.415141 eV Core-core repulsion = 27493.596808 eV Total energy + Delta-G solvation = -4071.818333 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.27922 -41.23674 -40.07276 -38.16253 -37.12242 -35.37345 -34.44185 -33.23135 -32.03695 -31.88691 -29.16175 -29.05983 -28.42478 -26.57546 -25.55986 -24.49777 -24.23171 -22.86127 -22.38390 -21.08310 -19.45032 -19.30413 -18.66195 -18.29936 -18.03605 -17.41476 -16.85510 -16.67903 -16.11738 -15.94482 -15.64710 -15.43819 -15.22697 -15.01131 -14.75392 -14.49677 -14.27969 -14.21618 -14.10915 -13.89527 -13.66487 -13.57244 -13.36425 -13.17521 -13.07230 -12.94051 -12.89177 -12.81841 -12.61268 -12.58315 -12.16862 -12.12437 -11.72456 -11.63482 -11.22144 -11.12951 -10.90081 -10.78184 -10.60869 -10.49263 -9.86052 -9.65996 -8.86102 -7.87283 -5.19263 -0.31565 0.05601 1.38763 1.46517 1.47750 1.56185 1.88318 2.34831 2.49295 2.59699 3.30007 3.34559 3.38245 3.48783 3.50896 3.61232 3.83876 3.97707 4.07466 4.14044 4.20826 4.29618 4.31887 4.38305 4.40003 4.52207 4.55681 4.58538 4.66011 4.68205 4.75802 4.81737 4.86234 4.87850 4.93467 4.97017 5.07353 5.09185 5.12212 5.17144 5.23261 5.30682 5.35597 5.41798 5.49712 5.60243 5.76324 5.97587 6.27701 6.55859 6.81250 6.94529 6.99321 7.64599 8.66634 9.30166 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003092 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.042281 B = 9052.487342 C = 9928.835318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.009 3.991 3 C -0.186 4.186 4 C 0.325 3.675 5 O -0.488 6.488 6 N -0.531 5.531 7 C 0.184 3.816 8 C -0.112 4.112 9 C -0.203 4.203 10 C 0.581 3.419 11 O -0.568 6.568 12 N -0.591 5.591 13 C 0.119 3.881 14 C -0.107 4.107 15 C -0.085 4.085 16 C 0.131 3.869 17 N -0.637 5.637 18 C -0.223 4.223 19 H 0.085 0.915 20 C -0.066 4.066 21 N -0.953 5.953 22 Si 0.973 3.027 23 H -0.290 1.290 24 H -0.297 1.297 25 H -0.266 1.266 26 C 0.161 3.839 27 C -0.089 4.089 28 C 0.124 3.876 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.178 0.822 33 H 0.424 0.576 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.043 0.957 42 H 0.052 0.948 43 H 0.246 0.754 44 H 0.033 0.967 45 H 0.011 0.989 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.085 0.915 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.568 15.046 -14.353 21.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.001 3.999 3 C -0.207 4.207 4 C 0.146 3.854 5 O -0.299 6.299 6 N -0.252 5.252 7 C 0.045 3.955 8 C -0.169 4.169 9 C -0.208 4.208 10 C 0.369 3.631 11 O -0.448 6.448 12 N -0.322 5.322 13 C -0.003 4.003 14 C -0.145 4.145 15 C -0.087 4.087 16 C 0.006 3.994 17 N -0.363 5.363 18 C -0.351 4.351 19 H 0.102 0.898 20 C -0.259 4.259 21 N -0.602 5.602 22 Si 0.802 3.198 23 H -0.217 1.217 24 H -0.224 1.224 25 H -0.190 1.190 26 C 0.035 3.965 27 C -0.127 4.127 28 C 0.001 3.999 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.080 0.920 32 H 0.195 0.805 33 H 0.286 0.714 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.029 0.971 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.104 0.896 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.748 14.788 -15.128 21.681 hybrid contribution -0.083 -0.492 1.799 1.866 sum -4.831 14.296 -13.330 20.135 Atomic orbital electron populations 1.20993 0.87634 1.04482 1.04640 1.20495 0.98147 0.90347 0.90905 1.22118 0.93031 1.00244 1.05309 1.19522 0.87911 0.84990 0.92936 1.84672 1.75909 1.33180 1.36117 1.66983 1.42719 0.98487 1.17031 1.21111 0.89447 0.93381 0.91520 1.20873 1.00689 0.91332 1.03997 1.20636 0.94866 0.94597 1.10707 1.18004 0.77671 0.84071 0.83369 1.90777 1.56192 1.65833 1.32013 1.48133 1.56480 1.22024 1.05531 1.21692 0.95320 0.81696 1.01601 1.21677 1.00756 0.98404 0.93698 1.21832 0.97429 0.96135 0.93264 1.22548 0.92625 0.98136 0.86101 1.45901 1.23647 1.64938 1.01800 1.19305 1.04644 1.29366 0.81771 0.89765 1.25554 0.97244 1.01095 1.02042 1.70024 1.11588 1.43202 1.35373 0.85151 0.76362 0.78030 0.80263 1.21727 1.22353 1.19048 1.22018 0.95802 0.93139 0.85533 1.21310 0.97881 0.93797 0.99692 1.21711 1.00217 0.95129 0.82803 0.88121 0.87897 0.92049 0.80501 0.71377 0.89365 0.89129 0.90727 0.89092 0.89359 0.91788 0.89708 0.93933 0.92963 0.94530 0.94886 0.97121 0.92012 0.92147 0.89646 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 9.69 71.23 0.69 -0.93 16 2 C 0.01 0.16 5.95 -19.44 -0.12 0.05 16 3 C -0.19 -2.98 9.72 22.43 0.22 -2.76 16 4 C 0.32 6.58 7.74 84.81 0.66 7.24 16 5 O -0.49 -7.91 13.55 -87.93 -1.19 -9.10 16 6 N -0.53 -13.36 10.28 -295.90 -3.04 -16.40 16 7 C 0.18 4.57 6.69 42.91 0.29 4.86 16 8 C -0.11 -2.60 9.78 71.24 0.70 -1.90 16 9 C -0.20 -4.76 3.62 -19.99 -0.07 -4.83 16 10 C 0.58 14.98 4.20 86.72 0.36 15.34 16 11 O -0.57 -18.19 16.49 -3.97 -0.07 -18.25 16 12 N -0.59 -13.71 2.94 -822.19 -2.41 -16.13 16 13 C 0.12 2.67 6.35 86.42 0.55 3.21 16 14 C -0.11 -2.77 5.30 30.56 0.16 -2.61 16 15 C -0.09 -2.79 0.84 -52.51 -0.04 -2.83 16 16 C 0.13 4.72 7.63 83.32 0.64 5.35 16 17 N -0.64 -31.03 3.55 -738.13 -2.62 -33.66 16 18 C -0.22 -12.07 10.74 84.03 0.90 -11.17 16 19 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 20 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 21 N -0.95 -56.94 11.52 21.65 0.25 -56.69 16 22 Si 0.97 44.94 29.55 68.60 2.03 46.97 16 23 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 24 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 26 C 0.16 7.31 6.54 83.31 0.55 7.86 16 27 C -0.09 -2.67 5.27 30.55 0.16 -2.51 16 28 C 0.12 2.81 6.24 86.41 0.54 3.35 16 29 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.10 0.89 8.10 -2.39 -0.02 0.87 16 31 H 0.06 1.06 7.18 -2.39 -0.02 1.04 16 32 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.42 2.56 9.06 -74.06 -0.67 1.89 16 34 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.07 1.80 6.92 -2.39 -0.02 1.78 16 37 H 0.09 2.12 6.97 -2.39 -0.02 2.11 16 38 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.08 2.10 8.10 -2.39 -0.02 2.08 16 41 H 0.04 1.47 8.06 -2.39 -0.02 1.45 16 42 H 0.05 1.72 7.53 -2.38 -0.02 1.71 16 43 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 44 H 0.03 1.73 7.11 -2.39 -0.02 1.71 16 45 H 0.01 0.52 8.09 -2.39 -0.02 0.50 16 46 H 0.06 2.24 7.95 -2.39 -0.02 2.22 16 47 H 0.06 1.84 8.00 -2.38 -0.02 1.82 16 48 H 0.09 1.83 6.19 -2.39 -0.01 1.81 16 49 H 0.09 1.80 7.60 -2.38 -0.02 1.78 16 Total: -1.00 -74.56 392.77 -0.11 -74.67 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.30 Total: 14.11 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 6.64 Total: 14.48 kcal Atomic # 7 Polarization: -115.04 SS G_CDS: -7.83 Total: -122.87 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -1.26 Total: -27.35 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -74.56 -0.11 -74.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035857189.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.144 kcal (2) G-P(sol) polarization free energy of solvation -74.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds