Wall clock time and date at job start Wed Apr 1 2020 06:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34870 * 119.09550 * 2 1 4 4 C 1.41672 * 119.33665 * 179.97438 * 3 2 1 5 5 O 1.22084 * 121.06610 * 179.97438 * 4 3 2 6 6 C 1.47099 * 117.86399 * 0.02562 * 4 3 2 7 7 C 1.47292 * 120.88159 * 180.02562 * 6 4 3 8 8 O 1.21614 * 120.00028 * 36.06028 * 7 6 4 9 9 N 1.34777 * 119.99444 * 216.05943 * 7 6 4 10 10 C 1.46591 * 119.69106 * 354.57081 * 9 7 6 11 11 C 1.53954 * 110.57911 * 132.16798 * 10 9 7 12 12 C 1.51519 * 107.34125 * 51.05719 * 11 10 9 13 13 H 1.09003 * 109.28101 * 53.69883 * 12 11 10 14 14 C 1.55391 * 107.91047 * 295.19210 * 12 11 10 15 15 H 1.08998 * 111.42757 * 309.48175 * 14 12 11 16 16 C 1.53150 * 100.47229 * 190.42142 * 14 12 11 17 17 C 1.55282 * 101.45567 * 39.85636 * 16 14 12 18 18 N 1.45466 * 117.35149 * 178.75950 * 12 11 10 19 19 C 1.36928 * 126.40900 * 329.40631 * 18 12 11 20 20 H 1.07996 * 120.00253 * 359.97438 * 19 18 12 21 21 C 1.38813 * 120.00420 * 179.97438 * 19 18 12 22 22 N 1.31624 * 119.99694 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00431 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47113 * 89.99860 * 23 21 19 25 25 H 1.48503 * 109.47470 * 210.00015 * 23 21 19 26 26 H 1.48500 * 109.47042 * 329.99843 * 23 21 19 27 27 C 1.47726 * 119.67576 * 174.59008 * 9 7 6 28 28 C 1.37993 * 118.23612 * 0.27166 * 6 4 3 29 29 N 1.34348 * 120.36926 * 359.41843 * 28 6 4 30 30 C 1.46501 * 118.80625 * 180.31123 * 29 28 6 31 31 H 1.09002 * 109.47523 * 95.90115 * 1 2 3 32 32 H 1.09000 * 109.46722 * 215.89740 * 1 2 3 33 33 H 1.09002 * 109.47273 * 335.89543 * 1 2 3 34 34 H 1.07997 * 120.33266 * 359.97438 * 3 2 1 35 35 H 1.09002 * 109.25929 * 252.45490 * 10 9 7 36 36 H 1.09007 * 109.25475 * 11.89013 * 10 9 7 37 37 H 1.09000 * 109.88478 * 170.51266 * 11 10 9 38 38 H 1.08993 * 109.88640 * 291.60433 * 11 10 9 39 39 H 1.08999 * 111.50718 * 281.68316 * 16 14 12 40 40 H 1.09001 * 110.79401 * 157.71437 * 16 14 12 41 41 H 1.09009 * 109.91825 * 217.74374 * 17 16 14 42 42 H 1.08999 * 110.09123 * 96.53343 * 17 16 14 43 43 H 0.97006 * 119.99997 * 179.97438 * 22 21 19 44 44 H 1.08995 * 110.07094 * 351.27420 * 27 9 7 45 45 H 1.09005 * 110.06460 * 112.74285 * 27 9 7 46 46 H 1.07994 * 119.81627 * 179.70733 * 28 6 4 47 47 H 1.09001 * 109.47329 * 264.35437 * 30 29 28 48 48 H 1.08999 * 109.46952 * 24.35235 * 30 29 28 49 49 H 1.08999 * 109.47106 * 144.35308 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1785 0.0000 4 6 3.5795 1.1845 0.0006 5 8 4.2051 2.2329 0.0001 6 6 4.2725 -0.1131 0.0005 7 6 5.7437 -0.1844 0.0016 8 8 6.3918 0.6363 0.6225 9 7 6.3715 -1.1593 -0.6854 10 6 5.5850 -2.2137 -1.3323 11 6 6.0511 -2.4227 -2.7846 12 6 7.5555 -2.6005 -2.7550 13 1 7.8101 -3.3972 -2.0560 14 6 8.1844 -1.2689 -2.2589 15 1 7.8014 -0.4151 -2.8178 16 6 9.6644 -1.5348 -2.5496 17 6 9.5839 -2.2617 -3.9194 18 7 8.2250 -2.8429 -4.0235 19 6 7.6978 -3.4871 -5.1106 20 1 6.6896 -3.8725 -5.0735 21 6 8.4591 -3.6450 -6.2606 22 7 9.6877 -3.1749 -6.3061 23 14 7.7401 -4.5246 -7.7434 24 1 7.0649 -3.5382 -8.6246 25 1 8.8293 -5.1969 -8.4963 26 1 6.7546 -5.5378 -7.2880 27 6 7.8458 -1.1551 -0.7789 28 6 3.5077 -1.2616 -0.0058 29 7 2.1665 -1.1846 0.0000 30 6 1.3881 -2.4257 0.0000 31 1 -0.3634 -0.1057 -1.0222 32 1 -0.3633 -0.8325 0.6026 33 1 -0.3634 0.9381 0.4197 34 1 1.6135 2.1084 -0.0004 35 1 5.7070 -3.1445 -0.7782 36 1 4.5326 -1.9299 -1.3299 37 1 5.5807 -3.3137 -3.2004 38 1 5.7928 -1.5511 -3.3859 39 1 10.1110 -2.1788 -1.7921 40 1 10.2159 -0.5986 -2.6368 41 1 10.3311 -3.0541 -3.9637 42 1 9.7473 -1.5517 -4.7302 43 1 10.2199 -3.2856 -7.1095 44 1 8.2436 -0.2243 -0.3747 45 1 8.2575 -2.0050 -0.2345 46 1 3.9900 -2.2279 -0.0108 47 1 1.1051 -2.6771 -1.0222 48 1 1.9900 -3.2321 0.4191 49 1 0.4901 -2.2915 0.6030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036744693.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:44:13 Heat of formation + Delta-G solvation = 26.853606 kcal Electronic energy + Delta-G solvation = -31393.775651 eV Core-core repulsion = 27323.404809 eV Total energy + Delta-G solvation = -4070.370842 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.61768 -39.94514 -38.36571 -37.62445 -35.42543 -33.87638 -33.04894 -32.39866 -31.55002 -29.78034 -28.75853 -27.63202 -27.23050 -25.36787 -24.35526 -23.26954 -22.47918 -21.79663 -20.21507 -19.94462 -19.24915 -18.20649 -17.37132 -16.85427 -16.43752 -16.40195 -15.66372 -15.52905 -15.01184 -14.93239 -14.53650 -14.35229 -13.99736 -13.94012 -13.77126 -13.70020 -13.52744 -13.37923 -12.97219 -12.86006 -12.80068 -12.48826 -12.43207 -12.28345 -12.06813 -11.60205 -11.42512 -11.34398 -10.83775 -10.78836 -10.74366 -10.16322 -10.07315 -9.89188 -9.85256 -9.68647 -9.56894 -9.42247 -9.20181 -8.63043 -8.44199 -8.09907 -6.83926 -5.72105 -3.05397 0.71536 1.08154 2.05099 2.89856 3.15916 3.37565 3.41518 3.44668 3.70842 3.77688 4.07691 4.19990 4.36461 4.47441 4.48463 4.64704 4.79268 4.84048 4.90022 4.91923 4.99553 5.11721 5.22309 5.27328 5.36010 5.41994 5.47749 5.56032 5.56960 5.63509 5.83477 5.89949 6.05161 6.10342 6.17311 6.21202 6.24802 6.30128 6.37891 6.51965 6.56040 6.65547 6.66339 6.88074 7.09202 7.54631 7.58503 7.63295 7.81679 8.07680 8.24227 8.44324 9.18371 9.82233 10.51016 11.40311 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013174 B = 0.003150 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.877859 B = 8886.161017 C =10219.866406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.156 3.844 3 C -0.271 4.271 4 C 0.411 3.589 5 O -0.489 6.489 6 C -0.293 4.293 7 C 0.576 3.424 8 O -0.523 6.523 9 N -0.608 5.608 10 C 0.089 3.911 11 C -0.129 4.129 12 C 0.168 3.832 13 H 0.020 0.980 14 C -0.124 4.124 15 H 0.080 0.920 16 C -0.136 4.136 17 C 0.177 3.823 18 N -0.595 5.595 19 C -0.226 4.226 20 H 0.077 0.923 21 C -0.008 4.008 22 N -0.920 5.920 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.129 3.871 28 C 0.156 3.844 29 N -0.473 5.473 30 C 0.048 3.952 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.152 0.848 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.038 0.962 42 H 0.055 0.945 43 H 0.252 0.748 44 H 0.090 0.910 45 H 0.068 0.932 46 H 0.184 0.816 47 H 0.084 0.916 48 H 0.094 0.906 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.539 -1.325 14.758 25.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.050 3.950 3 C -0.295 4.295 4 C 0.298 3.702 5 O -0.371 6.371 6 C -0.304 4.304 7 C 0.364 3.636 8 O -0.398 6.398 9 N -0.342 5.342 10 C -0.035 4.035 11 C -0.168 4.168 12 C 0.059 3.941 13 H 0.037 0.963 14 C -0.144 4.144 15 H 0.099 0.901 16 C -0.175 4.175 17 C 0.052 3.948 18 N -0.320 5.320 19 C -0.354 4.354 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.567 5.567 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.208 1.208 27 C 0.008 3.992 28 C 0.027 3.973 29 N -0.161 5.161 30 C -0.094 4.094 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.169 0.831 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.108 0.892 45 H 0.086 0.914 46 H 0.200 0.800 47 H 0.103 0.897 48 H 0.112 0.888 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.887 -0.575 14.859 24.832 hybrid contribution -0.382 -0.725 -1.073 1.350 sum -20.268 -1.300 13.786 24.547 Atomic orbital electron populations 1.21188 0.88077 1.04968 1.04167 1.20273 0.94854 0.85055 0.94812 1.22232 0.96191 0.97217 1.13866 1.18121 0.88304 0.87692 0.76130 1.90808 1.70047 1.33343 1.42915 1.22504 0.94591 0.95210 1.18096 1.17538 0.86023 0.80752 0.79310 1.90787 1.66598 1.39717 1.42732 1.48195 1.07466 1.26430 1.52079 1.22470 0.95809 0.90185 0.94989 1.21884 0.98531 1.02522 0.93871 1.20645 0.90721 0.93183 0.89536 0.96259 1.22569 0.97518 0.99995 0.94349 0.90133 1.22587 0.94392 1.00251 1.00225 1.21537 0.86370 0.95650 0.91201 1.44222 1.11314 1.66025 1.10394 1.18966 0.97575 1.28627 0.90268 0.90481 1.24799 0.96329 1.01219 0.98112 1.69946 1.08529 1.50428 1.27843 0.86162 0.77764 0.79066 0.82994 1.21675 1.21698 1.20792 1.21626 0.77861 1.02877 0.96884 1.22826 0.82013 1.00643 0.91846 1.42612 1.05274 1.07189 1.61001 1.22559 0.97779 0.84339 1.04689 0.89247 0.90140 0.88922 0.83061 0.91434 0.89478 0.90647 0.91267 0.92199 0.92009 0.94425 0.92679 0.93743 0.89173 0.91368 0.79982 0.89712 0.88779 0.88821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.34 9.34 36.01 0.34 0.00 16 2 C 0.16 1.10 6.64 -82.13 -0.55 0.55 16 3 C -0.27 -2.97 9.57 -39.47 -0.38 -3.35 16 4 C 0.41 6.68 6.94 -34.68 -0.24 6.44 16 5 O -0.49 -10.41 16.96 -8.25 -0.14 -10.55 16 6 C -0.29 -4.24 5.62 -102.71 -0.58 -4.81 16 7 C 0.58 10.11 7.31 -12.58 -0.09 10.01 16 8 O -0.52 -11.39 15.68 -7.83 -0.12 -11.51 16 9 N -0.61 -9.44 3.00 -173.80 -0.52 -9.96 16 10 C 0.09 1.10 4.81 -3.50 -0.02 1.08 16 11 C -0.13 -2.11 5.48 -26.98 -0.15 -2.25 16 12 C 0.17 3.30 2.58 -67.97 -0.18 3.13 16 13 H 0.02 0.39 7.95 -51.93 -0.41 -0.02 16 14 C -0.12 -2.31 2.83 -89.66 -0.25 -2.56 16 15 H 0.08 1.67 8.12 -51.93 -0.42 1.25 16 16 C -0.14 -2.59 6.50 -25.44 -0.17 -2.76 16 17 C 0.18 4.29 5.44 -1.92 -0.01 4.28 16 18 N -0.60 -14.75 3.34 -163.08 -0.55 -15.29 16 19 C -0.23 -6.07 9.88 -15.06 -0.15 -6.22 16 20 H 0.08 1.96 7.23 -52.49 -0.38 1.58 16 21 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 22 N -0.92 -26.89 10.43 55.49 0.58 -26.31 16 23 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C 0.13 2.12 5.91 -3.75 -0.02 2.09 16 28 C 0.16 1.39 7.66 -16.54 -0.13 1.26 16 29 N -0.47 -2.94 2.97 -119.90 -0.36 -3.29 16 30 C 0.05 0.07 9.98 59.85 0.60 0.67 16 31 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.08 0.05 6.00 -51.93 -0.31 -0.26 16 33 H 0.09 0.21 7.97 -51.93 -0.41 -0.21 16 34 H 0.15 1.43 8.01 -52.49 -0.42 1.01 16 35 H 0.07 0.68 8.06 -51.93 -0.42 0.27 16 36 H 0.09 0.88 3.68 -52.20 -0.19 0.68 16 37 H 0.07 1.19 7.65 -51.93 -0.40 0.79 16 38 H 0.07 1.26 8.12 -51.93 -0.42 0.84 16 39 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.04 0.99 7.77 -51.92 -0.40 0.59 16 42 H 0.05 1.50 7.20 -51.93 -0.37 1.12 16 43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.09 1.58 7.03 -51.93 -0.37 1.21 16 45 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 46 H 0.18 1.15 5.27 -52.49 -0.28 0.87 16 47 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 48 H 0.09 0.02 7.86 -51.93 -0.41 -0.39 16 49 H 0.09 -0.03 5.93 -51.93 -0.31 -0.34 16 LS Contribution 378.04 15.07 5.70 5.70 Total: -1.00 -39.76 378.04 -9.66 -49.43 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -7.17 Total: -2.12 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -2.06 Total: 7.24 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.84 Total: -54.86 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.26 Total: -22.06 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -39.76 -9.66 -49.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036744693.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.283 kcal (2) G-P(sol) polarization free energy of solvation -39.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds