Wall clock time and date at job start Wed Apr 1 2020 06:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34870 * 119.09550 * 2 1 4 4 C 1.41672 * 119.33665 * 179.97438 * 3 2 1 5 5 O 1.22084 * 121.06610 * 179.97438 * 4 3 2 6 6 C 1.47099 * 117.86399 * 0.02562 * 4 3 2 7 7 C 1.47292 * 120.88159 * 180.02562 * 6 4 3 8 8 O 1.21614 * 120.00028 * 36.06028 * 7 6 4 9 9 N 1.34777 * 119.99444 * 216.05943 * 7 6 4 10 10 C 1.46591 * 119.69106 * 354.57081 * 9 7 6 11 11 C 1.53954 * 110.57911 * 132.16798 * 10 9 7 12 12 C 1.51519 * 107.34125 * 51.05719 * 11 10 9 13 13 H 1.09003 * 109.28101 * 53.69883 * 12 11 10 14 14 C 1.55391 * 107.91047 * 295.19210 * 12 11 10 15 15 H 1.08998 * 111.42757 * 309.48175 * 14 12 11 16 16 C 1.53150 * 100.47229 * 190.42142 * 14 12 11 17 17 C 1.55282 * 101.45567 * 39.85636 * 16 14 12 18 18 N 1.45466 * 117.35149 * 178.75950 * 12 11 10 19 19 C 1.36928 * 126.40900 * 329.40631 * 18 12 11 20 20 H 1.07996 * 120.00253 * 359.97438 * 19 18 12 21 21 C 1.38813 * 120.00420 * 179.97438 * 19 18 12 22 22 N 1.31624 * 119.99694 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00431 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47113 * 89.99860 * 23 21 19 25 25 H 1.48503 * 109.47470 * 210.00015 * 23 21 19 26 26 H 1.48500 * 109.47042 * 329.99843 * 23 21 19 27 27 C 1.47726 * 119.67576 * 174.59008 * 9 7 6 28 28 C 1.37993 * 118.23612 * 0.27166 * 6 4 3 29 29 N 1.34348 * 120.36926 * 359.41843 * 28 6 4 30 30 C 1.46501 * 118.80625 * 180.31123 * 29 28 6 31 31 H 1.09002 * 109.47523 * 95.90115 * 1 2 3 32 32 H 1.09000 * 109.46722 * 215.89740 * 1 2 3 33 33 H 1.09002 * 109.47273 * 335.89543 * 1 2 3 34 34 H 1.07997 * 120.33266 * 359.97438 * 3 2 1 35 35 H 1.09002 * 109.25929 * 252.45490 * 10 9 7 36 36 H 1.09007 * 109.25475 * 11.89013 * 10 9 7 37 37 H 1.09000 * 109.88478 * 170.51266 * 11 10 9 38 38 H 1.08993 * 109.88640 * 291.60433 * 11 10 9 39 39 H 1.08999 * 111.50718 * 281.68316 * 16 14 12 40 40 H 1.09001 * 110.79401 * 157.71437 * 16 14 12 41 41 H 1.09009 * 109.91825 * 217.74374 * 17 16 14 42 42 H 1.08999 * 110.09123 * 96.53343 * 17 16 14 43 43 H 0.97006 * 119.99997 * 179.97438 * 22 21 19 44 44 H 1.08995 * 110.07094 * 351.27420 * 27 9 7 45 45 H 1.09005 * 110.06460 * 112.74285 * 27 9 7 46 46 H 1.07994 * 119.81627 * 179.70733 * 28 6 4 47 47 H 1.09001 * 109.47329 * 264.35437 * 30 29 28 48 48 H 1.08999 * 109.46952 * 24.35235 * 30 29 28 49 49 H 1.08999 * 109.47106 * 144.35308 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1785 0.0000 4 6 3.5795 1.1845 0.0006 5 8 4.2051 2.2329 0.0001 6 6 4.2725 -0.1131 0.0005 7 6 5.7437 -0.1844 0.0016 8 8 6.3918 0.6363 0.6225 9 7 6.3715 -1.1593 -0.6854 10 6 5.5850 -2.2137 -1.3323 11 6 6.0511 -2.4227 -2.7846 12 6 7.5555 -2.6005 -2.7550 13 1 7.8101 -3.3972 -2.0560 14 6 8.1844 -1.2689 -2.2589 15 1 7.8014 -0.4151 -2.8178 16 6 9.6644 -1.5348 -2.5496 17 6 9.5839 -2.2617 -3.9194 18 7 8.2250 -2.8429 -4.0235 19 6 7.6978 -3.4871 -5.1106 20 1 6.6896 -3.8725 -5.0735 21 6 8.4591 -3.6450 -6.2606 22 7 9.6877 -3.1749 -6.3061 23 14 7.7401 -4.5246 -7.7434 24 1 7.0649 -3.5382 -8.6246 25 1 8.8293 -5.1969 -8.4963 26 1 6.7546 -5.5378 -7.2880 27 6 7.8458 -1.1551 -0.7789 28 6 3.5077 -1.2616 -0.0058 29 7 2.1665 -1.1846 0.0000 30 6 1.3881 -2.4257 0.0000 31 1 -0.3634 -0.1057 -1.0222 32 1 -0.3633 -0.8325 0.6026 33 1 -0.3634 0.9381 0.4197 34 1 1.6135 2.1084 -0.0004 35 1 5.7070 -3.1445 -0.7782 36 1 4.5326 -1.9299 -1.3299 37 1 5.5807 -3.3137 -3.2004 38 1 5.7928 -1.5511 -3.3859 39 1 10.1110 -2.1788 -1.7921 40 1 10.2159 -0.5986 -2.6368 41 1 10.3311 -3.0541 -3.9637 42 1 9.7473 -1.5517 -4.7302 43 1 10.2199 -3.2856 -7.1095 44 1 8.2436 -0.2243 -0.3747 45 1 8.2575 -2.0050 -0.2345 46 1 3.9900 -2.2279 -0.0108 47 1 1.1051 -2.6771 -1.0222 48 1 1.9900 -3.2321 0.4191 49 1 0.4901 -2.2915 0.6030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036744693.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:44:11 Heat of formation + Delta-G solvation = -1.235687 kcal Electronic energy + Delta-G solvation = -31394.993694 eV Core-core repulsion = 27323.404809 eV Total energy + Delta-G solvation = -4071.588885 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.63 seconds Orbital eigenvalues (eV) -42.46483 -41.19375 -39.70379 -38.87818 -36.87042 -34.96005 -34.17982 -33.58279 -33.03818 -31.33038 -30.02171 -28.69817 -27.68791 -26.84097 -25.71819 -24.58740 -23.71227 -22.78685 -21.87611 -21.34855 -20.54302 -19.22349 -18.52285 -18.03729 -17.63714 -17.21135 -16.88845 -16.70542 -16.51939 -16.16349 -15.96314 -15.66559 -15.45616 -14.96692 -14.91518 -14.60432 -14.44425 -14.26831 -13.99003 -13.86168 -13.81055 -13.73877 -13.38813 -13.30576 -13.10022 -13.01973 -12.68510 -12.64730 -12.55982 -12.34288 -12.07803 -12.00176 -11.77397 -11.60073 -11.51682 -11.14328 -11.00170 -10.69467 -10.44645 -10.29328 -9.73234 -9.04414 -8.85988 -7.80913 -5.15831 -0.17111 0.30333 1.46796 1.47072 1.49644 1.57708 1.65737 2.01662 2.52398 2.68907 3.22642 3.37990 3.39044 3.50408 3.58217 3.75940 3.82221 3.84532 3.98073 4.09952 4.14691 4.18829 4.27814 4.36990 4.44996 4.47185 4.51328 4.60929 4.68711 4.72951 4.74884 4.77112 4.80814 4.84875 4.89806 4.89885 5.03408 5.06693 5.17514 5.19941 5.30428 5.47376 5.54047 5.55944 5.66789 5.71861 5.76767 5.80656 6.21877 6.37935 7.05345 7.10044 7.19700 7.81135 8.50966 9.31368 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013174 B = 0.003150 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.877859 B = 8886.161017 C =10219.866406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.190 3.810 3 C -0.308 4.308 4 C 0.384 3.616 5 O -0.580 6.580 6 C -0.350 4.350 7 C 0.571 3.429 8 O -0.583 6.583 9 N -0.607 5.607 10 C 0.093 3.907 11 C -0.123 4.123 12 C 0.160 3.840 13 H 0.036 0.964 14 C -0.114 4.114 15 H 0.048 0.952 16 C -0.122 4.122 17 C 0.183 3.817 18 N -0.616 5.616 19 C -0.227 4.227 20 H 0.094 0.906 21 C -0.075 4.075 22 N -0.957 5.957 23 Si 0.976 3.024 24 H -0.292 1.292 25 H -0.301 1.301 26 H -0.259 1.259 27 C 0.137 3.863 28 C 0.201 3.799 29 N -0.456 5.456 30 C 0.029 3.971 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.154 0.846 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.041 0.959 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.007 0.993 42 H 0.012 0.988 43 H 0.243 0.757 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.224 0.776 47 H 0.106 0.894 48 H 0.119 0.881 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.572 -5.672 16.222 30.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.082 3.918 3 C -0.331 4.331 4 C 0.278 3.722 5 O -0.470 6.470 6 C -0.360 4.360 7 C 0.362 3.638 8 O -0.463 6.463 9 N -0.339 5.339 10 C -0.028 4.028 11 C -0.162 4.162 12 C 0.053 3.947 13 H 0.054 0.946 14 C -0.134 4.134 15 H 0.067 0.933 16 C -0.160 4.160 17 C 0.058 3.942 18 N -0.340 5.340 19 C -0.356 4.356 20 H 0.112 0.888 21 C -0.267 4.267 22 N -0.607 5.607 23 Si 0.805 3.195 24 H -0.219 1.219 25 H -0.228 1.228 26 H -0.183 1.183 27 C 0.014 3.986 28 C 0.067 3.933 29 N -0.139 5.139 30 C -0.109 4.109 31 H 0.128 0.872 32 H 0.134 0.866 33 H 0.116 0.884 34 H 0.172 0.828 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.109 0.891 38 H 0.060 0.940 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.026 0.974 42 H 0.030 0.970 43 H 0.052 0.948 44 H 0.090 0.910 45 H 0.114 0.886 46 H 0.239 0.761 47 H 0.124 0.876 48 H 0.138 0.862 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -25.036 -5.007 16.343 30.315 hybrid contribution 0.992 0.465 -1.524 1.877 sum -24.044 -4.542 14.820 28.607 Atomic orbital electron populations 1.21413 0.83833 1.06890 1.06094 1.20860 0.97105 0.83950 0.89873 1.22100 0.93850 0.99575 1.17571 1.18937 0.90499 0.87577 0.75150 1.90748 1.71847 1.35777 1.48621 1.22137 0.93285 0.96531 1.24077 1.18063 0.87421 0.79878 0.78470 1.90737 1.68174 1.41859 1.45526 1.48260 1.07132 1.26851 1.51676 1.22738 0.96519 0.91026 0.92542 1.21828 0.95957 1.01991 0.96445 1.20910 0.92926 0.93455 0.87404 0.94641 1.22391 0.96763 0.98529 0.95727 0.93305 1.22473 0.95352 1.00445 0.97776 1.21279 0.86160 0.94052 0.92717 1.44519 1.11907 1.65825 1.11771 1.19467 0.98035 1.27337 0.90733 0.88816 1.25690 0.96870 1.02946 1.01234 1.70191 1.10047 1.52463 1.28017 0.85099 0.77002 0.78118 0.79276 1.21949 1.22762 1.18342 1.21480 0.79060 1.03167 0.94860 1.23161 0.82974 1.00015 0.87111 1.43274 1.04865 1.09075 1.56696 1.23181 0.98635 0.82066 1.07036 0.87206 0.86621 0.88421 0.82845 0.86891 0.86760 0.89070 0.93995 0.89607 0.91247 0.97429 0.96978 0.94758 0.90993 0.88606 0.76057 0.87559 0.86216 0.85969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.06 9.34 71.24 0.67 0.72 16 2 C 0.19 1.92 6.64 41.21 0.27 2.20 16 3 C -0.31 -6.75 9.57 22.34 0.21 -6.53 16 4 C 0.38 13.39 6.94 25.45 0.18 13.56 16 5 O -0.58 -27.76 16.96 6.93 0.12 -27.64 16 6 C -0.35 -10.03 5.62 -18.63 -0.10 -10.14 16 7 C 0.57 20.56 7.31 86.62 0.63 21.19 16 8 O -0.58 -27.32 15.68 8.45 0.13 -27.19 16 9 N -0.61 -18.08 3.00 -822.02 -2.47 -20.55 16 10 C 0.09 1.92 4.81 86.68 0.42 2.34 16 11 C -0.12 -3.70 5.48 30.43 0.17 -3.53 16 12 C 0.16 6.08 2.58 45.52 0.12 6.19 16 13 H 0.04 1.30 7.95 -2.39 -0.02 1.28 16 14 C -0.11 -4.27 2.83 -10.17 -0.03 -4.30 16 15 H 0.05 2.13 8.12 -2.39 -0.02 2.11 16 16 C -0.12 -4.73 6.50 31.43 0.20 -4.52 16 17 C 0.18 9.28 5.44 86.84 0.47 9.75 16 18 N -0.62 -30.78 3.34 -669.86 -2.24 -33.02 16 19 C -0.23 -12.13 9.88 84.04 0.83 -11.30 16 20 H 0.09 4.57 7.23 -2.91 -0.02 4.55 16 21 C -0.08 -4.23 5.49 84.86 0.47 -3.77 16 22 N -0.96 -58.40 10.43 21.65 0.23 -58.18 16 23 Si 0.98 44.88 29.55 68.60 2.03 46.90 16 24 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 25 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 26 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 27 C 0.14 4.40 5.91 85.90 0.51 4.91 16 28 C 0.20 2.70 7.66 84.25 0.65 3.35 16 29 N -0.46 -3.05 2.97 -533.24 -1.58 -4.63 16 30 C 0.03 -0.15 9.98 127.77 1.28 1.12 16 31 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.12 -0.77 6.00 -2.39 -0.01 -0.78 16 33 H 0.10 0.00 7.97 -2.39 -0.02 -0.02 16 34 H 0.15 3.09 8.01 -2.91 -0.02 3.06 16 35 H 0.11 1.46 8.06 -2.39 -0.02 1.44 16 36 H 0.12 1.70 3.68 -2.65 -0.01 1.69 16 37 H 0.09 2.48 7.65 -2.39 -0.02 2.46 16 38 H 0.04 1.48 8.12 -2.39 -0.02 1.46 16 39 H 0.09 2.90 8.12 -2.39 -0.02 2.88 16 40 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.01 0.42 7.77 -2.38 -0.02 0.40 16 42 H 0.01 0.70 7.20 -2.39 -0.02 0.68 16 43 H 0.24 14.56 8.31 -92.70 -0.77 13.79 16 44 H 0.07 2.62 7.03 -2.39 -0.02 2.60 16 45 H 0.10 2.59 8.08 -2.38 -0.02 2.57 16 46 H 0.22 1.22 5.27 -2.91 -0.02 1.20 16 47 H 0.11 -0.78 8.14 -2.39 -0.02 -0.79 16 48 H 0.12 -1.05 7.86 -2.39 -0.02 -1.07 16 49 H 0.12 -1.18 5.93 -2.39 -0.01 -1.19 16 Total: -1.00 -102.87 378.04 4.11 -98.76 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: 0.97 Total: 4.29 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: 6.93 Total: 21.24 kcal Atomic # 7 Polarization: -110.31 SS G_CDS: -6.06 Total: -116.37 kcal Atomic # 8 Polarization: -55.08 SS G_CDS: 0.25 Total: -54.83 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -102.87 4.11 -98.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036744693.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.525 kcal (2) G-P(sol) polarization free energy of solvation -102.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds