Wall clock time and date at job start Wed Apr 1 2020 06:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34857 * 119.10002 * 2 1 4 4 C 1.41678 * 119.33792 * 179.73426 * 3 2 1 5 5 O 1.22082 * 121.07016 * 180.25737 * 4 3 2 6 6 C 1.47102 * 117.86197 * 0.54959 * 4 3 2 7 7 C 1.47283 * 120.88285 * 179.73035 * 6 4 3 8 8 O 1.21620 * 119.99884 * 326.65485 * 7 6 4 9 9 N 1.34776 * 120.00186 * 146.64692 * 7 6 4 10 10 C 1.46605 * 119.67919 * 356.17597 * 9 7 6 11 11 C 1.53960 * 110.54183 * 227.78287 * 10 9 7 12 12 C 1.51523 * 107.34444 * 308.96351 * 11 10 9 13 13 H 1.08995 * 109.28055 * 306.97657 * 12 11 10 14 14 C 1.55360 * 107.79346 * 64.86327 * 12 11 10 15 15 H 1.09002 * 111.51618 * 51.17993 * 14 12 11 16 16 C 1.53738 * 100.22219 * 169.08764 * 14 12 11 17 17 C 1.55293 * 101.83859 * 320.90210 * 16 14 12 18 18 N 1.45471 * 117.34794 * 181.91146 * 12 11 10 19 19 C 1.36939 * 126.40610 * 30.64265 * 18 12 11 20 20 H 1.08000 * 119.99756 * 359.97438 * 19 18 12 21 21 C 1.38806 * 119.99815 * 179.97438 * 19 18 12 22 22 N 1.31617 * 120.00308 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00030 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47568 * 89.99570 * 23 21 19 25 25 H 1.48500 * 109.47256 * 209.99663 * 23 21 19 26 26 H 1.48505 * 109.46947 * 329.99467 * 23 21 19 27 27 C 1.47641 * 119.63493 * 176.11879 * 9 7 6 28 28 C 1.37992 * 118.23171 * 359.46006 * 6 4 3 29 29 N 1.34339 * 120.37501 * 0.27082 * 28 6 4 30 30 C 1.46507 * 118.80741 * 179.97438 * 29 28 6 31 31 H 1.08999 * 109.46576 * 264.07151 * 1 2 3 32 32 H 1.09005 * 109.46639 * 24.06587 * 1 2 3 33 33 H 1.08991 * 109.47439 * 144.06991 * 1 2 3 34 34 H 1.08003 * 120.33419 * 359.97438 * 3 2 1 35 35 H 1.08997 * 109.25279 * 107.52098 * 10 9 7 36 36 H 1.08999 * 109.25649 * 348.04320 * 10 9 7 37 37 H 1.09000 * 109.88040 * 68.42400 * 11 10 9 38 38 H 1.08997 * 109.87723 * 189.43151 * 11 10 9 39 39 H 1.08999 * 110.95853 * 202.76757 * 16 14 12 40 40 H 1.08997 * 110.95963 * 79.03769 * 16 14 12 41 41 H 1.09001 * 109.92167 * 263.12910 * 17 16 14 42 42 H 1.09002 * 109.91941 * 141.82447 * 17 16 14 43 43 H 0.97000 * 120.00603 * 179.97438 * 22 21 19 44 44 H 1.08995 * 110.08448 * 8.77415 * 27 9 7 45 45 H 1.08995 * 110.07195 * 247.17804 * 27 9 7 46 46 H 1.08009 * 119.80905 * 180.25241 * 28 6 4 47 47 H 1.09000 * 109.47166 * 95.94690 * 30 29 28 48 48 H 1.08992 * 109.47372 * 215.94786 * 30 29 28 49 49 H 1.08999 * 109.46780 * 335.94990 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1629 1.1783 0.0000 4 6 3.5797 1.1842 0.0057 5 8 4.2054 2.2325 0.0106 6 6 4.2726 -0.1134 -0.0010 7 6 5.7437 -0.1848 -0.0016 8 8 6.3937 0.6675 -0.5763 9 7 6.3696 -1.1946 0.6349 10 6 5.5840 -2.1707 1.3960 11 6 6.1997 -2.3909 2.7898 12 6 7.6719 -2.6896 2.5912 13 1 7.7803 -3.5084 1.8800 14 6 8.3372 -1.4201 1.9916 15 1 8.0991 -0.5306 2.5749 16 6 9.8209 -1.7984 2.1300 17 6 9.8412 -2.5082 3.5111 18 7 8.4615 -2.9774 3.7785 19 6 8.0135 -3.5713 4.9282 20 1 6.9803 -3.8744 5.0122 21 6 8.8874 -3.7838 5.9856 22 7 10.1466 -3.4149 5.8830 23 14 8.2765 -4.5946 7.5536 24 1 8.4413 -6.0665 7.4465 25 1 9.0616 -4.0915 8.7093 26 1 6.8409 -4.2703 7.7517 27 6 7.8397 -1.3067 0.5572 28 6 3.5076 -1.2618 -0.0010 29 7 2.1665 -1.1847 -0.0005 30 6 1.3879 -2.4258 -0.0012 31 1 -0.3632 -0.1061 1.0222 32 1 -0.3633 0.9384 -0.4191 33 1 -0.3634 -0.8321 -0.6030 34 1 1.6137 2.1083 -0.0004 35 1 5.5674 -3.1177 0.8566 36 1 4.5641 -1.8027 1.5076 37 1 6.0822 -1.4909 3.3933 38 1 5.7125 -3.2330 3.2813 39 1 10.4507 -0.9088 2.1397 40 1 10.1249 -2.4809 1.3365 41 1 10.1513 -1.8060 4.2850 42 1 10.5232 -3.3579 3.4819 43 1 10.7572 -3.5631 6.6220 44 1 8.2584 -0.4180 0.0852 45 1 8.1176 -2.1973 -0.0065 46 1 3.9900 -2.2282 -0.0018 47 1 1.1050 -2.6778 1.0209 48 1 0.4900 -2.2912 -0.6040 49 1 1.9898 -3.2320 -0.4208 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036744694.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:44:18 Heat of formation + Delta-G solvation = 19.810748 kcal Electronic energy + Delta-G solvation = -31337.945909 eV Core-core repulsion = 27267.269666 eV Total energy + Delta-G solvation = -4070.676243 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.59682 -39.94133 -38.35424 -37.60812 -35.39025 -33.85723 -33.04795 -32.39153 -31.53684 -29.78723 -28.72658 -27.64522 -27.23440 -25.29890 -24.35818 -23.27463 -22.46884 -21.79291 -20.20718 -19.93584 -19.26080 -18.16037 -17.38325 -16.78901 -16.44945 -16.41254 -15.68621 -15.52763 -15.03379 -14.88702 -14.50605 -14.34229 -13.99063 -13.94082 -13.79037 -13.68443 -13.53697 -13.35566 -12.95775 -12.88476 -12.84492 -12.48488 -12.45601 -12.28752 -12.10087 -11.60849 -11.43951 -11.35064 -10.85332 -10.78484 -10.73981 -10.14768 -10.07546 -9.88139 -9.84672 -9.68222 -9.57315 -9.42148 -9.21758 -8.62750 -8.43871 -8.10756 -6.83649 -5.71853 -3.05164 0.70560 1.08017 2.04070 2.91846 3.15373 3.37836 3.42110 3.45209 3.71916 3.77440 4.07405 4.20614 4.36082 4.47273 4.48206 4.64441 4.78442 4.83810 4.89503 4.93852 4.99154 5.13470 5.21239 5.26225 5.36237 5.42352 5.47740 5.55506 5.56776 5.64130 5.83606 5.90027 6.05721 6.09279 6.17641 6.21288 6.25742 6.29628 6.38369 6.51275 6.57049 6.66314 6.67315 6.88292 7.09714 7.54985 7.58692 7.63655 7.81690 8.07630 8.24419 8.45231 9.18747 9.82571 10.51297 11.40638 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013718 B = 0.003059 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.550635 B = 9150.972045 C =10410.033933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.155 3.845 3 C -0.270 4.270 4 C 0.410 3.590 5 O -0.488 6.488 6 C -0.295 4.295 7 C 0.575 3.425 8 O -0.522 6.522 9 N -0.609 5.609 10 C 0.098 3.902 11 C -0.129 4.129 12 C 0.168 3.832 13 H 0.019 0.981 14 C -0.125 4.125 15 H 0.080 0.920 16 C -0.136 4.136 17 C 0.177 3.823 18 N -0.595 5.595 19 C -0.226 4.226 20 H 0.078 0.922 21 C -0.008 4.008 22 N -0.920 5.920 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.130 3.870 28 C 0.163 3.837 29 N -0.473 5.473 30 C 0.048 3.952 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.152 0.848 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.038 0.962 43 H 0.252 0.748 44 H 0.091 0.909 45 H 0.068 0.932 46 H 0.178 0.822 47 H 0.084 0.916 48 H 0.093 0.907 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.780 -0.921 -14.093 25.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 C -0.294 4.294 4 C 0.297 3.703 5 O -0.370 6.370 6 C -0.306 4.306 7 C 0.363 3.637 8 O -0.397 6.397 9 N -0.343 5.343 10 C -0.025 4.025 11 C -0.168 4.168 12 C 0.060 3.940 13 H 0.036 0.964 14 C -0.146 4.146 15 H 0.099 0.901 16 C -0.175 4.175 17 C 0.053 3.947 18 N -0.319 5.319 19 C -0.354 4.354 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.568 5.568 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.208 1.208 27 C 0.008 3.992 28 C 0.033 3.967 29 N -0.161 5.161 30 C -0.093 4.093 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.169 0.831 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.109 0.891 45 H 0.087 0.913 46 H 0.195 0.805 47 H 0.103 0.897 48 H 0.112 0.888 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -21.115 -0.143 -14.166 25.427 hybrid contribution -0.311 -0.715 1.086 1.337 sum -21.425 -0.858 -13.080 25.117 Atomic orbital electron populations 1.21187 0.88073 1.04972 1.04157 1.20270 0.94852 0.85036 0.94902 1.22244 0.96229 0.97210 1.13755 1.18138 0.88290 0.87751 0.76171 1.90810 1.70026 1.33342 1.42784 1.22492 0.94593 0.95141 1.18354 1.17550 0.86038 0.81005 0.79086 1.90793 1.66436 1.37988 1.44500 1.48188 1.07803 1.27840 1.50498 1.22250 0.95255 0.91552 0.93431 1.21890 0.98004 1.02454 0.94477 1.20618 0.90101 0.93207 0.90102 0.96374 1.22661 0.96973 1.00039 0.94912 0.90150 1.22712 0.94491 0.99991 1.00286 1.21532 0.86100 0.96579 0.90491 1.44209 1.05513 1.69892 1.12297 1.18968 0.94698 1.31408 0.90353 0.90466 1.24794 0.95806 1.01467 0.98377 1.69939 1.03148 1.52079 1.31593 0.86160 0.77654 0.78969 0.83198 1.21674 1.21704 1.20781 1.21579 0.77792 1.02497 0.97324 1.22690 0.81980 1.00550 0.91455 1.42601 1.05280 1.07199 1.60975 1.22558 0.97767 0.84342 1.04681 0.89258 0.88919 0.90144 0.83067 0.91678 0.90044 0.91269 0.90631 0.92006 0.92348 0.92744 0.94369 0.93737 0.89062 0.91340 0.80506 0.89711 0.88840 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.32 9.35 36.01 0.34 0.01 16 2 C 0.16 1.07 6.64 -82.13 -0.54 0.52 16 3 C -0.27 -2.93 9.57 -39.47 -0.38 -3.30 16 4 C 0.41 6.61 6.94 -34.68 -0.24 6.37 16 5 O -0.49 -10.34 16.89 -9.71 -0.16 -10.50 16 6 C -0.29 -4.23 5.50 -102.72 -0.56 -4.79 16 7 C 0.58 10.07 7.33 -12.58 -0.09 9.97 16 8 O -0.52 -11.39 15.55 -9.29 -0.14 -11.54 16 9 N -0.61 -9.41 3.00 -173.86 -0.52 -9.93 16 10 C 0.10 1.23 4.64 -3.48 -0.02 1.22 16 11 C -0.13 -2.13 5.48 -26.98 -0.15 -2.28 16 12 C 0.17 3.32 2.58 -67.98 -0.18 3.14 16 13 H 0.02 0.37 7.90 -51.93 -0.41 -0.04 16 14 C -0.13 -2.33 2.86 -89.37 -0.26 -2.59 16 15 H 0.08 1.67 8.12 -51.93 -0.42 1.25 16 16 C -0.14 -2.60 6.54 -25.13 -0.16 -2.76 16 17 C 0.18 4.31 5.45 -1.91 -0.01 4.30 16 18 N -0.59 -14.77 3.35 -163.09 -0.55 -15.32 16 19 C -0.23 -6.08 9.88 -15.06 -0.15 -6.23 16 20 H 0.08 1.97 7.21 -52.49 -0.38 1.59 16 21 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 22 N -0.92 -26.93 10.44 55.49 0.58 -26.35 16 23 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 C 0.13 2.11 5.96 -3.80 -0.02 2.08 16 28 C 0.16 1.43 7.62 -16.54 -0.13 1.31 16 29 N -0.47 -2.87 2.97 -119.74 -0.36 -3.23 16 30 C 0.05 0.07 9.98 59.85 0.60 0.66 16 31 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.09 0.20 7.97 -51.93 -0.41 -0.22 16 33 H 0.08 0.04 6.00 -51.93 -0.31 -0.27 16 34 H 0.15 1.41 8.01 -52.48 -0.42 0.99 16 35 H 0.07 0.65 7.81 -51.93 -0.41 0.24 16 36 H 0.08 0.85 4.40 -51.93 -0.23 0.62 16 37 H 0.07 1.28 8.12 -51.93 -0.42 0.85 16 38 H 0.08 1.21 7.62 -51.93 -0.40 0.81 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.02 8.11 -51.93 -0.42 0.59 16 41 H 0.05 1.48 7.21 -51.93 -0.37 1.11 16 42 H 0.04 1.01 7.77 -51.93 -0.40 0.60 16 43 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.09 1.58 6.97 -51.93 -0.36 1.22 16 45 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 46 H 0.18 1.11 5.41 -52.48 -0.28 0.82 16 47 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 48 H 0.09 -0.04 5.93 -51.93 -0.31 -0.35 16 49 H 0.09 0.01 7.86 -51.93 -0.41 -0.40 16 LS Contribution 378.11 15.07 5.70 5.70 Total: -1.00 -39.78 378.11 -9.72 -49.50 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -7.19 Total: -2.36 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: -2.05 Total: 7.31 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.84 Total: -54.83 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.31 Total: -22.04 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -39.78 -9.72 -49.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036744694.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.309 kcal (2) G-P(sol) polarization free energy of solvation -39.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds