Wall clock time and date at job start Wed Apr 1 2020 06:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34857 * 119.10002 * 2 1 4 4 C 1.41678 * 119.33792 * 179.73426 * 3 2 1 5 5 O 1.22082 * 121.07016 * 180.25737 * 4 3 2 6 6 C 1.47102 * 117.86197 * 0.54959 * 4 3 2 7 7 C 1.47283 * 120.88285 * 179.73035 * 6 4 3 8 8 O 1.21620 * 119.99884 * 326.65485 * 7 6 4 9 9 N 1.34776 * 120.00186 * 146.64692 * 7 6 4 10 10 C 1.46605 * 119.67919 * 356.17597 * 9 7 6 11 11 C 1.53960 * 110.54183 * 227.78287 * 10 9 7 12 12 C 1.51523 * 107.34444 * 308.96351 * 11 10 9 13 13 H 1.08995 * 109.28055 * 306.97657 * 12 11 10 14 14 C 1.55360 * 107.79346 * 64.86327 * 12 11 10 15 15 H 1.09002 * 111.51618 * 51.17993 * 14 12 11 16 16 C 1.53738 * 100.22219 * 169.08764 * 14 12 11 17 17 C 1.55293 * 101.83859 * 320.90210 * 16 14 12 18 18 N 1.45471 * 117.34794 * 181.91146 * 12 11 10 19 19 C 1.36939 * 126.40610 * 30.64265 * 18 12 11 20 20 H 1.08000 * 119.99756 * 359.97438 * 19 18 12 21 21 C 1.38806 * 119.99815 * 179.97438 * 19 18 12 22 22 N 1.31617 * 120.00308 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00030 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47568 * 89.99570 * 23 21 19 25 25 H 1.48500 * 109.47256 * 209.99663 * 23 21 19 26 26 H 1.48505 * 109.46947 * 329.99467 * 23 21 19 27 27 C 1.47641 * 119.63493 * 176.11879 * 9 7 6 28 28 C 1.37992 * 118.23171 * 359.46006 * 6 4 3 29 29 N 1.34339 * 120.37501 * 0.27082 * 28 6 4 30 30 C 1.46507 * 118.80741 * 179.97438 * 29 28 6 31 31 H 1.08999 * 109.46576 * 264.07151 * 1 2 3 32 32 H 1.09005 * 109.46639 * 24.06587 * 1 2 3 33 33 H 1.08991 * 109.47439 * 144.06991 * 1 2 3 34 34 H 1.08003 * 120.33419 * 359.97438 * 3 2 1 35 35 H 1.08997 * 109.25279 * 107.52098 * 10 9 7 36 36 H 1.08999 * 109.25649 * 348.04320 * 10 9 7 37 37 H 1.09000 * 109.88040 * 68.42400 * 11 10 9 38 38 H 1.08997 * 109.87723 * 189.43151 * 11 10 9 39 39 H 1.08999 * 110.95853 * 202.76757 * 16 14 12 40 40 H 1.08997 * 110.95963 * 79.03769 * 16 14 12 41 41 H 1.09001 * 109.92167 * 263.12910 * 17 16 14 42 42 H 1.09002 * 109.91941 * 141.82447 * 17 16 14 43 43 H 0.97000 * 120.00603 * 179.97438 * 22 21 19 44 44 H 1.08995 * 110.08448 * 8.77415 * 27 9 7 45 45 H 1.08995 * 110.07195 * 247.17804 * 27 9 7 46 46 H 1.08009 * 119.80905 * 180.25241 * 28 6 4 47 47 H 1.09000 * 109.47166 * 95.94690 * 30 29 28 48 48 H 1.08992 * 109.47372 * 215.94786 * 30 29 28 49 49 H 1.08999 * 109.46780 * 335.94990 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1629 1.1783 0.0000 4 6 3.5797 1.1842 0.0057 5 8 4.2054 2.2325 0.0106 6 6 4.2726 -0.1134 -0.0010 7 6 5.7437 -0.1848 -0.0016 8 8 6.3937 0.6675 -0.5763 9 7 6.3696 -1.1946 0.6349 10 6 5.5840 -2.1707 1.3960 11 6 6.1997 -2.3909 2.7898 12 6 7.6719 -2.6896 2.5912 13 1 7.7803 -3.5084 1.8800 14 6 8.3372 -1.4201 1.9916 15 1 8.0991 -0.5306 2.5749 16 6 9.8209 -1.7984 2.1300 17 6 9.8412 -2.5082 3.5111 18 7 8.4615 -2.9774 3.7785 19 6 8.0135 -3.5713 4.9282 20 1 6.9803 -3.8744 5.0122 21 6 8.8874 -3.7838 5.9856 22 7 10.1466 -3.4149 5.8830 23 14 8.2765 -4.5946 7.5536 24 1 8.4413 -6.0665 7.4465 25 1 9.0616 -4.0915 8.7093 26 1 6.8409 -4.2703 7.7517 27 6 7.8397 -1.3067 0.5572 28 6 3.5076 -1.2618 -0.0010 29 7 2.1665 -1.1847 -0.0005 30 6 1.3879 -2.4258 -0.0012 31 1 -0.3632 -0.1061 1.0222 32 1 -0.3633 0.9384 -0.4191 33 1 -0.3634 -0.8321 -0.6030 34 1 1.6137 2.1083 -0.0004 35 1 5.5674 -3.1177 0.8566 36 1 4.5641 -1.8027 1.5076 37 1 6.0822 -1.4909 3.3933 38 1 5.7125 -3.2330 3.2813 39 1 10.4507 -0.9088 2.1397 40 1 10.1249 -2.4809 1.3365 41 1 10.1513 -1.8060 4.2850 42 1 10.5232 -3.3579 3.4819 43 1 10.7572 -3.5631 6.6220 44 1 8.2584 -0.4180 0.0852 45 1 8.1176 -2.1973 -0.0065 46 1 3.9900 -2.2282 -0.0018 47 1 1.1050 -2.6778 1.0209 48 1 0.4900 -2.2912 -0.6040 49 1 1.9898 -3.2320 -0.4208 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036744694.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:44:15 Heat of formation + Delta-G solvation = -8.253431 kcal Electronic energy + Delta-G solvation = -31339.162863 eV Core-core repulsion = 27267.269666 eV Total energy + Delta-G solvation = -4071.893197 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -42.42875 -41.18672 -39.68402 -38.86010 -36.84482 -34.91905 -34.17348 -33.57340 -33.02662 -31.33356 -29.99741 -28.69949 -27.67695 -26.79994 -25.68540 -24.57164 -23.72881 -22.75721 -21.87222 -21.34512 -20.53816 -19.17716 -18.52387 -18.02996 -17.55176 -17.23724 -16.89715 -16.69955 -16.51251 -16.15891 -15.93465 -15.64283 -15.41741 -14.95186 -14.94315 -14.57740 -14.41393 -14.29078 -13.99953 -13.85364 -13.80370 -13.77567 -13.37200 -13.31061 -13.10708 -13.03827 -12.70586 -12.64234 -12.54693 -12.34314 -12.12281 -12.00061 -11.78205 -11.59857 -11.51890 -11.13337 -10.99222 -10.69197 -10.43299 -10.31399 -9.72065 -9.04211 -8.85978 -7.81263 -5.16113 -0.16665 0.31555 1.46849 1.47019 1.49494 1.57398 1.69282 2.01366 2.52163 2.70942 3.23961 3.37592 3.39324 3.52516 3.59166 3.75484 3.84423 3.85369 3.99586 4.09899 4.15212 4.19231 4.29284 4.37336 4.45619 4.47431 4.51638 4.61358 4.69218 4.73742 4.75203 4.77289 4.81675 4.85651 4.89795 4.90112 5.03994 5.07289 5.17770 5.20244 5.30892 5.48206 5.54480 5.56774 5.66993 5.72485 5.76458 5.81196 6.21730 6.38634 7.06604 7.10018 7.21442 7.81062 8.50785 9.31080 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013718 B = 0.003059 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.550635 B = 9150.972045 C =10410.033933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.190 3.810 3 C -0.307 4.307 4 C 0.383 3.617 5 O -0.579 6.579 6 C -0.351 4.351 7 C 0.570 3.430 8 O -0.583 6.583 9 N -0.607 5.607 10 C 0.103 3.897 11 C -0.124 4.124 12 C 0.160 3.840 13 H 0.037 0.963 14 C -0.115 4.115 15 H 0.046 0.954 16 C -0.122 4.122 17 C 0.183 3.817 18 N -0.616 5.616 19 C -0.227 4.227 20 H 0.093 0.907 21 C -0.075 4.075 22 N -0.957 5.957 23 Si 0.976 3.024 24 H -0.284 1.284 25 H -0.303 1.303 26 H -0.264 1.264 27 C 0.137 3.863 28 C 0.209 3.791 29 N -0.456 5.456 30 C 0.029 3.971 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.154 0.846 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.039 0.961 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.011 0.989 42 H 0.009 0.991 43 H 0.243 0.757 44 H 0.073 0.927 45 H 0.099 0.901 46 H 0.218 0.782 47 H 0.106 0.894 48 H 0.122 0.878 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.029 -5.158 -15.390 31.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.082 3.918 3 C -0.330 4.330 4 C 0.278 3.722 5 O -0.469 6.469 6 C -0.362 4.362 7 C 0.361 3.639 8 O -0.464 6.464 9 N -0.340 5.340 10 C -0.019 4.019 11 C -0.163 4.163 12 C 0.054 3.946 13 H 0.055 0.945 14 C -0.136 4.136 15 H 0.065 0.935 16 C -0.161 4.161 17 C 0.058 3.942 18 N -0.340 5.340 19 C -0.356 4.356 20 H 0.111 0.889 21 C -0.267 4.267 22 N -0.607 5.607 23 Si 0.805 3.195 24 H -0.211 1.211 25 H -0.230 1.230 26 H -0.189 1.189 27 C 0.015 3.985 28 C 0.075 3.925 29 N -0.139 5.139 30 C -0.109 4.109 31 H 0.128 0.872 32 H 0.116 0.884 33 H 0.133 0.867 34 H 0.171 0.829 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.058 0.942 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.029 0.971 42 H 0.027 0.973 43 H 0.053 0.947 44 H 0.092 0.908 45 H 0.117 0.883 46 H 0.234 0.766 47 H 0.125 0.875 48 H 0.140 0.860 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -26.483 -4.461 -15.478 30.997 hybrid contribution 1.128 0.437 1.487 1.917 sum -25.355 -4.024 -13.991 29.238 Atomic orbital electron populations 1.21412 0.83839 1.06871 1.06100 1.20852 0.97091 0.83926 0.89945 1.22106 0.93870 0.99565 1.17473 1.18956 0.90490 0.87634 0.75154 1.90750 1.71844 1.35796 1.48502 1.22110 0.93234 0.96455 1.24396 1.18090 0.87464 0.80155 0.78172 1.90744 1.68042 1.40210 1.47357 1.48252 1.07473 1.28046 1.50246 1.22507 0.95346 0.92938 0.91090 1.21837 0.96007 1.01538 0.96926 1.20884 0.91767 0.93598 0.88392 0.94539 1.22497 0.96458 0.98353 0.96259 0.93508 1.22590 0.95371 1.00276 0.97837 1.21273 0.85965 0.94794 0.92137 1.44507 1.06389 1.69753 1.13366 1.19459 0.95257 1.29960 0.90922 0.88889 1.25681 0.96105 1.03084 1.01824 1.70183 1.04412 1.54079 1.32025 0.85098 0.77691 0.77881 0.78816 1.21121 1.23047 1.18892 1.21455 0.78678 1.03073 0.95292 1.23027 0.82922 0.99902 0.86621 1.43262 1.04870 1.09077 1.56680 1.23175 0.98591 0.82055 1.07045 0.87183 0.88435 0.86654 0.82861 0.86776 0.87578 0.94238 0.89190 0.91273 0.89648 0.97095 0.97321 0.94734 0.90830 0.88283 0.76610 0.87512 0.86018 0.86285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.10 9.35 71.24 0.67 0.77 16 2 C 0.19 1.85 6.64 41.20 0.27 2.12 16 3 C -0.31 -6.61 9.57 22.34 0.21 -6.40 16 4 C 0.38 13.25 6.94 25.45 0.18 13.42 16 5 O -0.58 -27.62 16.89 8.33 0.14 -27.48 16 6 C -0.35 -9.97 5.50 -18.63 -0.10 -10.07 16 7 C 0.57 20.47 7.33 86.62 0.64 21.10 16 8 O -0.58 -27.47 15.55 9.82 0.15 -27.32 16 9 N -0.61 -17.94 3.00 -822.23 -2.46 -20.40 16 10 C 0.10 2.14 4.64 86.68 0.40 2.54 16 11 C -0.12 -3.79 5.48 30.43 0.17 -3.62 16 12 C 0.16 6.11 2.58 45.51 0.12 6.23 16 13 H 0.04 1.32 7.90 -2.39 -0.02 1.30 16 14 C -0.12 -4.32 2.86 -9.98 -0.03 -4.35 16 15 H 0.05 2.06 8.12 -2.39 -0.02 2.04 16 16 C -0.12 -4.73 6.54 31.63 0.21 -4.52 16 17 C 0.18 9.30 5.45 86.85 0.47 9.78 16 18 N -0.62 -30.87 3.35 -669.90 -2.24 -33.11 16 19 C -0.23 -12.21 9.88 84.03 0.83 -11.38 16 20 H 0.09 4.58 7.21 -2.91 -0.02 4.56 16 21 C -0.07 -4.22 5.49 84.86 0.47 -3.75 16 22 N -0.96 -58.50 10.44 21.65 0.23 -58.27 16 23 Si 0.98 45.07 29.55 68.60 2.03 47.10 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 26 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 27 C 0.14 4.35 5.96 85.91 0.51 4.86 16 28 C 0.21 2.74 7.62 84.25 0.64 3.38 16 29 N -0.46 -2.88 2.97 -532.75 -1.58 -4.46 16 30 C 0.03 -0.16 9.98 127.77 1.28 1.11 16 31 H 0.11 -0.34 8.14 -2.39 -0.02 -0.36 16 32 H 0.10 -0.03 7.97 -2.38 -0.02 -0.05 16 33 H 0.12 -0.79 6.00 -2.39 -0.01 -0.81 16 34 H 0.15 3.03 8.01 -2.91 -0.02 3.01 16 35 H 0.11 1.41 7.81 -2.39 -0.02 1.39 16 36 H 0.11 1.69 4.40 -2.39 -0.01 1.68 16 37 H 0.04 1.43 8.12 -2.39 -0.02 1.41 16 38 H 0.09 2.52 7.62 -2.39 -0.02 2.50 16 39 H 0.07 2.55 8.14 -2.39 -0.02 2.54 16 40 H 0.08 2.87 8.11 -2.39 -0.02 2.85 16 41 H 0.01 0.63 7.21 -2.39 -0.02 0.61 16 42 H 0.01 0.48 7.77 -2.39 -0.02 0.46 16 43 H 0.24 14.59 8.31 -92.71 -0.77 13.82 16 44 H 0.07 2.64 6.97 -2.39 -0.02 2.62 16 45 H 0.10 2.57 8.06 -2.39 -0.02 2.55 16 46 H 0.22 1.14 5.41 -2.91 -0.02 1.12 16 47 H 0.11 -0.82 8.14 -2.39 -0.02 -0.84 16 48 H 0.12 -1.20 5.93 -2.39 -0.01 -1.21 16 49 H 0.12 -1.06 7.86 -2.39 -0.02 -1.07 16 Total: -1.00 -103.21 378.11 4.15 -99.06 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: 0.97 Total: 3.68 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: 6.93 Total: 21.22 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -6.06 Total: -116.25 kcal Atomic # 8 Polarization: -55.09 SS G_CDS: 0.29 Total: -54.80 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -103.21 4.15 -99.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036744694.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.802 kcal (2) G-P(sol) polarization free energy of solvation -103.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds