Wall clock time and date at job start Wed Apr 1 2020 05:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35914 * 117.00396 * 2 1 4 4 C 1.38861 * 120.40525 * 359.97438 * 3 2 1 5 5 N 1.31875 * 120.99861 * 179.97438 * 4 3 2 6 6 C 1.31681 * 121.94556 * 359.97438 * 5 4 3 7 7 C 1.39525 * 120.69023 * 359.97438 * 6 5 4 8 8 C 1.47857 * 120.53156 * 180.02562 * 7 6 5 9 9 O 1.21544 * 119.99997 * 123.48632 * 8 7 6 10 10 N 1.34778 * 119.99878 * 303.48806 * 8 7 6 11 11 C 1.44215 * 115.76492 * 4.42538 * 10 8 7 12 12 C 1.51801 * 112.78300 * 185.98659 * 11 10 8 13 13 C 1.50990 * 112.00113 * 324.62292 * 12 11 10 14 14 H 1.09000 * 108.32068 * 180.02562 * 13 12 11 15 15 C 1.53977 * 111.97217 * 59.89318 * 13 12 11 16 16 H 1.09003 * 112.97230 * 75.44281 * 15 13 12 17 17 C 1.56274 * 99.75472 * 195.21445 * 15 13 12 18 18 C 1.54642 * 102.20295 * 38.87770 * 17 15 13 19 19 N 1.46658 * 113.21662 * 301.07322 * 13 12 11 20 20 C 1.36938 * 126.19563 * 330.15460 * 19 13 12 21 21 H 1.07997 * 120.00280 * 359.97135 * 20 19 13 22 22 C 1.38815 * 119.99746 * 179.97438 * 20 19 13 23 23 N 1.31622 * 119.99960 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00097 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46832 * 60.00819 * 24 22 20 26 26 H 1.48499 * 109.47074 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.47263 * 300.00669 * 24 22 20 28 28 C 1.43523 * 115.75875 * 184.67489 * 10 8 7 29 29 C 1.38844 * 120.40913 * 179.71635 * 3 2 1 30 30 C 1.50697 * 120.87893 * 0.02562 * 29 3 2 31 31 H 1.09006 * 109.46898 * 60.00454 * 1 2 3 32 32 H 1.08999 * 109.47272 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47215 * 300.00600 * 1 2 3 34 34 H 1.07995 * 119.49648 * 359.97438 * 4 3 2 35 35 H 1.08003 * 119.65481 * 179.97438 * 6 5 4 36 36 H 1.09002 * 108.82552 * 307.04741 * 11 10 8 37 37 H 1.09004 * 108.83113 * 65.35898 * 11 10 8 38 38 H 1.09001 * 109.09345 * 203.86747 * 12 11 10 39 39 H 1.08998 * 108.72189 * 85.13451 * 12 11 10 40 40 H 1.09003 * 110.85267 * 157.05439 * 17 15 13 41 41 H 1.08998 * 110.85909 * 280.69642 * 17 15 13 42 42 H 1.08999 * 109.97283 * 95.29000 * 18 17 15 43 43 H 1.09000 * 109.96756 * 216.50803 * 18 17 15 44 44 H 0.96996 * 120.00267 * 179.97438 * 23 22 20 45 45 H 1.08996 * 108.17316 * 302.26954 * 28 10 8 46 46 H 1.09000 * 108.16992 * 58.86039 * 28 10 8 47 47 H 1.09000 * 109.47640 * 95.36617 * 30 29 3 48 48 H 1.08995 * 109.47283 * 215.37169 * 30 29 3 49 49 H 1.09007 * 109.46680 * 335.37056 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2981 2.3809 -0.0005 5 7 1.8847 3.5620 0.0000 6 6 3.1954 3.6890 0.0015 7 6 4.0199 2.5635 0.0032 8 6 5.4912 2.7102 0.0054 9 8 6.1521 2.1929 0.8846 10 7 6.0994 3.4176 -0.9673 11 6 5.2234 4.0738 -1.9064 12 6 5.9740 4.7281 -3.0521 13 6 7.2980 5.3013 -2.6068 14 1 7.7835 5.7540 -3.4714 15 6 8.2261 4.2208 -2.0219 16 1 8.6731 3.5849 -2.7861 17 6 9.2765 5.1318 -1.3086 18 6 8.3910 6.2590 -0.7283 19 7 7.1654 6.3097 -1.5503 20 6 6.0982 7.1465 -1.3604 21 1 5.2490 7.0982 -2.0259 22 6 6.1080 8.0570 -0.3126 23 7 7.1433 8.1163 0.4981 24 14 4.6526 9.1991 -0.0540 25 1 3.4274 8.3938 0.1821 26 1 4.9085 10.0683 1.1226 27 1 4.4652 10.0433 -1.2611 28 6 7.5343 3.4147 -0.9365 29 6 3.4321 1.2934 0.0059 30 6 4.2809 0.0483 0.0119 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 0.2198 2.3226 -0.0014 35 1 3.6367 4.6748 0.0014 36 1 4.5282 3.3386 -2.3118 37 1 4.6542 4.8401 -1.3802 38 1 5.3625 5.5289 -3.4678 39 1 6.1528 3.9808 -3.8252 40 1 9.7842 4.5881 -0.5119 41 1 9.9937 5.5317 -2.0253 42 1 8.1355 6.0359 0.3076 43 1 8.9172 7.2120 -0.7846 44 1 7.1503 8.7527 1.2300 45 1 7.8543 3.8023 0.0307 46 1 7.8738 2.3817 -1.0118 47 1 4.5695 -0.1997 -1.0095 48 1 5.1753 0.2212 0.6104 49 1 3.7118 -0.7774 0.4392 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036752279.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:53 Heat of formation + Delta-G solvation = 7.901150 kcal Electronic energy + Delta-G solvation = -32321.242073 eV Core-core repulsion = 28250.049391 eV Total energy + Delta-G solvation = -4071.192682 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 6.03 seconds Orbital eigenvalues (eV) -41.21682 -40.09165 -38.48529 -37.77372 -35.15512 -33.83812 -32.95739 -31.88834 -30.92106 -29.38317 -28.11335 -27.85029 -27.52860 -25.33631 -24.33928 -23.16045 -22.74217 -22.24709 -20.17120 -19.91892 -18.18386 -17.82889 -17.48498 -16.62492 -16.51457 -16.28834 -16.06470 -15.67512 -15.52710 -14.74179 -14.45418 -14.16912 -14.08122 -13.94083 -13.77252 -13.33281 -13.08505 -12.96180 -12.83115 -12.64421 -12.34302 -12.18031 -12.09005 -11.85047 -11.70609 -11.49476 -11.46259 -11.22270 -10.94479 -10.75218 -10.71378 -10.20563 -10.12079 -9.89144 -9.83976 -9.70513 -9.59514 -9.40882 -9.21794 -8.60738 -8.53319 -8.08098 -6.83460 -5.71433 -3.04367 0.76076 1.17665 2.73159 2.98046 3.40489 3.42277 3.45677 3.47126 3.69602 4.33072 4.43469 4.48283 4.64354 4.70363 4.77681 4.84498 5.02663 5.07697 5.14232 5.21753 5.25494 5.31213 5.39119 5.49588 5.52095 5.55050 5.61532 5.70712 5.72856 5.83626 5.97072 6.03614 6.07684 6.18246 6.22833 6.30249 6.32431 6.35515 6.45231 6.48028 6.65416 6.71751 6.86170 6.98335 7.11048 7.54020 7.61232 7.64233 7.81546 7.85833 8.23611 8.41981 9.19431 9.82088 10.49988 11.40599 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011984 B = 0.004239 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.922725 B = 6603.684965 C = 8055.040018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.065 3.935 4 C 0.032 3.968 5 N -0.451 5.451 6 C 0.105 3.895 7 C -0.135 4.135 8 C 0.554 3.446 9 O -0.534 6.534 10 N -0.563 5.563 11 C 0.121 3.879 12 C -0.123 4.123 13 C 0.171 3.829 14 H 0.026 0.974 15 C -0.113 4.113 16 H 0.082 0.918 17 C -0.143 4.143 18 C 0.177 3.823 19 N -0.591 5.591 20 C -0.227 4.227 21 H 0.077 0.923 22 C -0.003 4.003 23 N -0.917 5.917 24 Si 0.902 3.098 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.144 3.856 29 C -0.030 4.030 30 C -0.119 4.119 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.159 0.841 35 H 0.174 0.826 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.047 0.953 43 H 0.042 0.958 44 H 0.252 0.748 45 H 0.071 0.929 46 H 0.050 0.950 47 H 0.073 0.927 48 H 0.090 0.910 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.073 -15.633 -5.085 18.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.221 6.221 3 C 0.017 3.983 4 C -0.126 4.126 5 N -0.160 5.160 6 C -0.054 4.054 7 C -0.141 4.141 8 C 0.340 3.660 9 O -0.412 6.412 10 N -0.292 5.292 11 C -0.002 4.002 12 C -0.162 4.162 13 C 0.063 3.937 14 H 0.043 0.957 15 C -0.133 4.133 16 H 0.100 0.900 17 C -0.181 4.181 18 C 0.052 3.948 19 N -0.316 5.316 20 C -0.355 4.355 21 H 0.095 0.905 22 C -0.200 4.200 23 N -0.564 5.564 24 Si 0.733 3.267 25 H -0.209 1.209 26 H -0.217 1.217 27 H -0.212 1.212 28 C 0.021 3.979 29 C -0.039 4.039 30 C -0.176 4.176 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.176 0.824 35 H 0.191 0.809 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.089 0.911 46 H 0.068 0.932 47 H 0.092 0.908 48 H 0.109 0.891 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.174 -15.121 -4.518 17.773 hybrid contribution -0.638 0.256 0.172 0.708 sum -8.812 -14.865 -4.346 17.819 Atomic orbital electron populations 1.23114 0.78144 1.04240 1.01603 1.86061 1.21395 1.25753 1.88863 1.19667 0.92200 0.85901 1.00495 1.23042 1.00547 0.87198 1.01773 1.67611 1.11943 1.25686 1.10770 1.23178 0.88203 0.98926 0.95052 1.20757 0.95289 0.93770 1.04244 1.18041 0.86351 0.79398 0.82205 1.90738 1.65632 1.48865 1.35988 1.46218 1.06567 1.48442 1.27978 1.20913 0.91969 0.96034 0.91294 1.21226 0.98781 0.99747 0.96434 1.20208 0.92332 0.88881 0.92312 0.95703 1.22455 0.97544 0.96375 0.96936 0.89985 1.23337 0.97281 0.98221 0.99285 1.21304 0.85290 0.93862 0.94301 1.44340 1.17876 1.38829 1.30594 1.18854 0.95178 1.11160 1.10289 0.90497 1.24745 0.97710 0.99575 0.97938 1.69931 1.29152 1.38579 1.18731 0.86349 0.82188 0.80880 0.77320 1.20896 1.21677 1.21224 1.20350 0.78469 0.98773 1.00279 1.19613 0.90806 0.95316 0.98140 1.20822 1.00007 0.93624 1.03130 0.92397 0.87966 0.92415 0.82385 0.80880 0.93017 0.90340 0.90358 0.92448 0.91905 0.92221 0.93475 0.93988 0.93725 0.91071 0.93218 0.90809 0.89117 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.82 101.05 0.99 1.15 16 2 O -0.31 -3.34 9.58 -19.47 -0.19 -3.53 16 3 C 0.06 0.83 6.68 -39.13 -0.26 0.57 16 4 C 0.03 0.41 10.21 -17.30 -0.18 0.23 16 5 N -0.45 -7.06 10.34 -12.79 -0.13 -7.19 16 6 C 0.10 1.74 9.22 -17.14 -0.16 1.58 16 7 C -0.14 -2.22 4.55 -104.84 -0.48 -2.70 16 8 C 0.55 10.18 6.45 -12.32 -0.08 10.10 16 9 O -0.53 -11.06 14.97 5.33 0.08 -10.98 16 10 N -0.56 -10.01 3.19 -180.33 -0.58 -10.58 16 11 C 0.12 2.00 4.41 -5.87 -0.03 1.97 16 12 C -0.12 -2.00 5.09 -28.35 -0.14 -2.14 16 13 C 0.17 3.20 2.93 -68.35 -0.20 3.00 16 14 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 15 C -0.11 -1.88 3.80 -88.92 -0.34 -2.22 16 16 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 17 C -0.14 -2.55 6.14 -24.11 -0.15 -2.70 16 18 C 0.18 4.11 4.82 -2.54 -0.01 4.10 16 19 N -0.59 -13.75 3.05 -164.18 -0.50 -14.26 16 20 C -0.23 -5.79 8.86 -15.06 -0.13 -5.93 16 21 H 0.08 1.88 6.89 -52.49 -0.36 1.52 16 22 C 0.00 -0.07 5.49 -17.43 -0.10 -0.17 16 23 N -0.92 -26.26 10.41 55.49 0.58 -25.69 16 24 Si 0.90 21.59 29.55 -169.99 -5.02 16.57 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 C 0.14 2.55 4.62 -6.19 -0.03 2.52 16 29 C -0.03 -0.43 5.96 -103.76 -0.62 -1.05 16 30 C -0.12 -1.54 9.45 36.00 0.34 -1.20 16 31 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16 32 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.33 7.68 -51.93 -0.40 -0.07 16 34 H 0.16 1.49 6.30 -52.49 -0.33 1.16 16 35 H 0.17 3.09 6.36 -52.48 -0.33 2.75 16 36 H 0.05 0.76 7.33 -51.93 -0.38 0.38 16 37 H 0.08 1.45 4.97 -51.93 -0.26 1.19 16 38 H 0.08 1.29 7.36 -51.93 -0.38 0.91 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.06 1.04 7.81 -51.93 -0.41 0.64 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 1.25 7.13 -51.93 -0.37 0.88 16 43 H 0.04 1.09 7.58 -51.93 -0.39 0.70 16 44 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.07 1.46 6.50 -51.93 -0.34 1.12 16 46 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 47 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.09 1.33 6.17 -51.93 -0.32 1.01 16 49 H 0.08 0.88 7.47 -51.92 -0.39 0.49 16 LS Contribution 373.39 15.07 5.63 5.63 Total: -1.00 -31.43 373.39 -8.85 -40.29 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -7.15 Total: 2.61 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -1.57 Total: 7.13 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.63 Total: -57.71 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.11 Total: -14.50 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.43 -8.85 -40.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036752279.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.187 kcal (2) G-P(sol) polarization free energy of solvation -31.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.03 seconds