Wall clock time and date at job start Wed Apr 1 2020 05:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35914 * 117.00396 * 2 1 4 4 C 1.38861 * 120.40525 * 359.97438 * 3 2 1 5 5 N 1.31875 * 120.99861 * 179.97438 * 4 3 2 6 6 C 1.31681 * 121.94556 * 359.97438 * 5 4 3 7 7 C 1.39525 * 120.69023 * 359.97438 * 6 5 4 8 8 C 1.47857 * 120.53156 * 180.02562 * 7 6 5 9 9 O 1.21544 * 119.99997 * 123.48632 * 8 7 6 10 10 N 1.34778 * 119.99878 * 303.48806 * 8 7 6 11 11 C 1.44215 * 115.76492 * 4.42538 * 10 8 7 12 12 C 1.51801 * 112.78300 * 185.98659 * 11 10 8 13 13 C 1.50990 * 112.00113 * 324.62292 * 12 11 10 14 14 H 1.09000 * 108.32068 * 180.02562 * 13 12 11 15 15 C 1.53977 * 111.97217 * 59.89318 * 13 12 11 16 16 H 1.09003 * 112.97230 * 75.44281 * 15 13 12 17 17 C 1.56274 * 99.75472 * 195.21445 * 15 13 12 18 18 C 1.54642 * 102.20295 * 38.87770 * 17 15 13 19 19 N 1.46658 * 113.21662 * 301.07322 * 13 12 11 20 20 C 1.36938 * 126.19563 * 330.15460 * 19 13 12 21 21 H 1.07997 * 120.00280 * 359.97135 * 20 19 13 22 22 C 1.38815 * 119.99746 * 179.97438 * 20 19 13 23 23 N 1.31622 * 119.99960 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00097 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46832 * 60.00819 * 24 22 20 26 26 H 1.48499 * 109.47074 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.47263 * 300.00669 * 24 22 20 28 28 C 1.43523 * 115.75875 * 184.67489 * 10 8 7 29 29 C 1.38844 * 120.40913 * 179.71635 * 3 2 1 30 30 C 1.50697 * 120.87893 * 0.02562 * 29 3 2 31 31 H 1.09006 * 109.46898 * 60.00454 * 1 2 3 32 32 H 1.08999 * 109.47272 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47215 * 300.00600 * 1 2 3 34 34 H 1.07995 * 119.49648 * 359.97438 * 4 3 2 35 35 H 1.08003 * 119.65481 * 179.97438 * 6 5 4 36 36 H 1.09002 * 108.82552 * 307.04741 * 11 10 8 37 37 H 1.09004 * 108.83113 * 65.35898 * 11 10 8 38 38 H 1.09001 * 109.09345 * 203.86747 * 12 11 10 39 39 H 1.08998 * 108.72189 * 85.13451 * 12 11 10 40 40 H 1.09003 * 110.85267 * 157.05439 * 17 15 13 41 41 H 1.08998 * 110.85909 * 280.69642 * 17 15 13 42 42 H 1.08999 * 109.97283 * 95.29000 * 18 17 15 43 43 H 1.09000 * 109.96756 * 216.50803 * 18 17 15 44 44 H 0.96996 * 120.00267 * 179.97438 * 23 22 20 45 45 H 1.08996 * 108.17316 * 302.26954 * 28 10 8 46 46 H 1.09000 * 108.16992 * 58.86039 * 28 10 8 47 47 H 1.09000 * 109.47640 * 95.36617 * 30 29 3 48 48 H 1.08995 * 109.47283 * 215.37169 * 30 29 3 49 49 H 1.09007 * 109.46680 * 335.37056 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2981 2.3809 -0.0005 5 7 1.8847 3.5620 0.0000 6 6 3.1954 3.6890 0.0015 7 6 4.0199 2.5635 0.0032 8 6 5.4912 2.7102 0.0054 9 8 6.1521 2.1929 0.8846 10 7 6.0994 3.4176 -0.9673 11 6 5.2234 4.0738 -1.9064 12 6 5.9740 4.7281 -3.0521 13 6 7.2980 5.3013 -2.6068 14 1 7.7835 5.7540 -3.4714 15 6 8.2261 4.2208 -2.0219 16 1 8.6731 3.5849 -2.7861 17 6 9.2765 5.1318 -1.3086 18 6 8.3910 6.2590 -0.7283 19 7 7.1654 6.3097 -1.5503 20 6 6.0982 7.1465 -1.3604 21 1 5.2490 7.0982 -2.0259 22 6 6.1080 8.0570 -0.3126 23 7 7.1433 8.1163 0.4981 24 14 4.6526 9.1991 -0.0540 25 1 3.4274 8.3938 0.1821 26 1 4.9085 10.0683 1.1226 27 1 4.4652 10.0433 -1.2611 28 6 7.5343 3.4147 -0.9365 29 6 3.4321 1.2934 0.0059 30 6 4.2809 0.0483 0.0119 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 0.2198 2.3226 -0.0014 35 1 3.6367 4.6748 0.0014 36 1 4.5282 3.3386 -2.3118 37 1 4.6542 4.8401 -1.3802 38 1 5.3625 5.5289 -3.4678 39 1 6.1528 3.9808 -3.8252 40 1 9.7842 4.5881 -0.5119 41 1 9.9937 5.5317 -2.0253 42 1 8.1355 6.0359 0.3076 43 1 8.9172 7.2120 -0.7846 44 1 7.1503 8.7527 1.2300 45 1 7.8543 3.8023 0.0307 46 1 7.8738 2.3817 -1.0118 47 1 4.5695 -0.1997 -1.0095 48 1 5.1753 0.2212 0.6104 49 1 3.7118 -0.7774 0.4392 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036752279.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:49 Heat of formation + Delta-G solvation = -12.561813 kcal Electronic energy + Delta-G solvation = -32322.129414 eV Core-core repulsion = 28250.049391 eV Total energy + Delta-G solvation = -4072.080023 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 4.00 seconds Orbital eigenvalues (eV) -42.43485 -41.33036 -39.81796 -38.91890 -36.68750 -34.99100 -34.68187 -33.43387 -32.15078 -31.06647 -29.44451 -28.85229 -28.48070 -26.93911 -25.91327 -24.45239 -24.14892 -23.39325 -21.85935 -21.26095 -19.53432 -19.13019 -18.63649 -18.22000 -17.84282 -17.47341 -17.11705 -16.91775 -16.86868 -16.49270 -15.84409 -15.67117 -15.27304 -15.15932 -14.98396 -14.77854 -14.47243 -14.16393 -13.95323 -13.86076 -13.83368 -13.68324 -13.17793 -13.02735 -12.98197 -12.95828 -12.74827 -12.69118 -12.43785 -12.34343 -12.25864 -12.05677 -11.58153 -11.53967 -11.43261 -11.26183 -11.16541 -10.64286 -10.58328 -10.45461 -9.58243 -9.45952 -8.79721 -7.78000 -5.09757 -0.37863 0.06250 1.44372 1.46138 1.48310 1.52804 1.87853 2.28013 2.52474 2.54088 3.23671 3.40005 3.41238 3.45592 3.55481 3.60031 3.79717 3.81709 3.97275 4.03607 4.11423 4.16459 4.18986 4.37094 4.42278 4.45931 4.52648 4.56557 4.58030 4.63167 4.64266 4.78526 4.78879 4.84021 4.89170 5.02100 5.03959 5.04926 5.10869 5.18753 5.32002 5.32062 5.40705 5.57952 5.69366 5.74276 5.82174 6.12897 6.23910 6.25908 6.72924 7.01674 7.15508 7.86310 8.53552 9.33553 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011984 B = 0.004239 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.922725 B = 6603.684965 C = 8055.040018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.313 6.313 3 C 0.079 3.921 4 C 0.039 3.961 5 N -0.468 5.468 6 C 0.092 3.908 7 C -0.147 4.147 8 C 0.552 3.448 9 O -0.567 6.567 10 N -0.564 5.564 11 C 0.124 3.876 12 C -0.119 4.119 13 C 0.159 3.841 14 H 0.035 0.965 15 C -0.096 4.096 16 H 0.129 0.871 17 C -0.130 4.130 18 C 0.186 3.814 19 N -0.606 5.606 20 C -0.211 4.211 21 H 0.089 0.911 22 C -0.066 4.066 23 N -0.953 5.953 24 Si 0.957 3.043 25 H -0.278 1.278 26 H -0.305 1.305 27 H -0.276 1.276 28 C 0.145 3.855 29 C -0.040 4.040 30 C -0.113 4.113 31 H 0.072 0.928 32 H 0.127 0.873 33 H 0.068 0.932 34 H 0.196 0.804 35 H 0.149 0.851 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.000 1.000 43 H 0.003 0.997 44 H 0.240 0.760 45 H 0.032 0.968 46 H 0.069 0.931 47 H 0.088 0.912 48 H 0.068 0.932 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.089 -18.473 -7.697 22.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.225 6.225 3 C 0.031 3.969 4 C -0.119 4.119 5 N -0.177 5.177 6 C -0.066 4.066 7 C -0.152 4.152 8 C 0.339 3.661 9 O -0.447 6.447 10 N -0.293 5.293 11 C 0.001 3.999 12 C -0.158 4.158 13 C 0.053 3.947 14 H 0.053 0.947 15 C -0.115 4.115 16 H 0.147 0.853 17 C -0.168 4.168 18 C 0.060 3.940 19 N -0.332 5.332 20 C -0.341 4.341 21 H 0.107 0.893 22 C -0.259 4.259 23 N -0.603 5.603 24 Si 0.787 3.213 25 H -0.204 1.204 26 H -0.231 1.231 27 H -0.202 1.202 28 C 0.022 3.978 29 C -0.049 4.049 30 C -0.169 4.169 31 H 0.091 0.909 32 H 0.145 0.855 33 H 0.086 0.914 34 H 0.213 0.787 35 H 0.167 0.833 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.018 0.982 43 H 0.021 0.979 44 H 0.049 0.951 45 H 0.050 0.950 46 H 0.087 0.913 47 H 0.106 0.894 48 H 0.087 0.913 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.210 -17.980 -7.192 21.892 hybrid contribution -0.141 1.010 0.969 1.407 sum -10.352 -16.970 -6.223 20.829 Atomic orbital electron populations 1.23526 0.75558 1.06432 1.02828 1.86078 1.23948 1.24351 1.88159 1.19617 0.91630 0.86868 0.98780 1.23601 1.02162 0.86217 0.99928 1.67598 1.11291 1.27353 1.11477 1.22786 0.88895 0.98026 0.96900 1.20546 0.93853 0.94682 1.06152 1.18401 0.87276 0.78788 0.81683 1.90709 1.66616 1.50302 1.37089 1.46319 1.06725 1.48074 1.28177 1.20924 0.91998 0.96022 0.90917 1.21222 0.97009 1.00562 0.96982 1.20505 0.94552 0.88496 0.91150 0.94746 1.22509 0.96140 0.95826 0.97074 0.85287 1.23205 0.97040 0.96551 1.00040 1.20994 0.86155 0.94127 0.92683 1.44575 1.17201 1.39721 1.31662 1.19238 0.95682 1.09989 1.09150 0.89344 1.25443 0.99876 1.01875 0.98695 1.70167 1.31099 1.39525 1.19482 0.85457 0.79869 0.79200 0.76804 1.20412 1.23149 1.20180 1.20345 0.78738 0.99827 0.98902 1.19820 0.92048 0.94959 0.98087 1.20782 0.99043 0.93357 1.03701 0.90900 0.85490 0.91364 0.78720 0.83333 0.90595 0.92950 0.90639 0.88477 0.90797 0.90092 0.98175 0.97876 0.95105 0.94955 0.91279 0.89367 0.91289 0.89079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.82 113.37 1.11 1.20 16 2 O -0.31 -5.66 9.58 -92.58 -0.89 -6.55 16 3 C 0.08 1.84 6.68 22.56 0.15 1.99 16 4 C 0.04 0.89 10.21 84.84 0.87 1.76 16 5 N -0.47 -14.23 10.34 -194.39 -2.01 -16.24 16 6 C 0.09 3.10 9.22 85.03 0.78 3.88 16 7 C -0.15 -4.84 4.55 -20.01 -0.09 -4.93 16 8 C 0.55 20.66 6.45 86.79 0.56 21.22 16 9 O -0.57 -24.30 14.97 -3.86 -0.06 -24.35 16 10 N -0.56 -19.96 3.19 -842.71 -2.69 -22.65 16 11 C 0.12 3.98 4.41 86.41 0.38 4.36 16 12 C -0.12 -3.56 5.09 29.55 0.15 -3.41 16 13 C 0.16 5.68 2.93 44.64 0.13 5.81 16 14 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 15 C -0.10 -2.95 3.80 -9.70 -0.04 -2.99 16 16 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 17 C -0.13 -4.55 6.14 32.29 0.20 -4.35 16 18 C 0.19 9.04 4.82 86.72 0.42 9.46 16 19 N -0.61 -28.72 3.05 -673.34 -2.05 -30.78 16 20 C -0.21 -11.05 8.86 84.03 0.74 -10.31 16 21 H 0.09 4.33 6.89 -2.91 -0.02 4.31 16 22 C -0.07 -3.73 5.49 84.86 0.47 -3.27 16 23 N -0.95 -58.11 10.41 21.65 0.23 -57.88 16 24 Si 0.96 46.08 29.55 68.60 2.03 48.11 16 25 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 26 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 27 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 28 C 0.14 5.03 4.62 86.56 0.40 5.43 16 29 C -0.04 -1.12 5.96 -19.30 -0.12 -1.23 16 30 C -0.11 -2.73 9.45 71.24 0.67 -2.06 16 31 H 0.07 0.46 7.67 -2.38 -0.02 0.44 16 32 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.07 0.49 7.68 -2.39 -0.02 0.47 16 34 H 0.20 2.87 6.30 -2.91 -0.02 2.86 16 35 H 0.15 5.67 6.36 -2.91 -0.02 5.65 16 36 H 0.08 2.08 7.33 -2.39 -0.02 2.07 16 37 H 0.05 1.97 4.97 -2.39 -0.01 1.96 16 38 H 0.08 2.31 7.36 -2.39 -0.02 2.30 16 39 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.07 2.43 7.81 -2.39 -0.02 2.41 16 41 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.00 0.00 7.13 -2.39 -0.02 -0.02 16 43 H 0.00 0.17 7.58 -2.39 -0.02 0.15 16 44 H 0.24 14.59 8.31 -92.71 -0.77 13.82 16 45 H 0.03 1.38 6.50 -2.39 -0.02 1.36 16 46 H 0.07 2.14 8.10 -2.39 -0.02 2.12 16 47 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.07 2.01 6.17 -2.39 -0.01 1.99 16 49 H 0.09 1.90 7.47 -2.38 -0.02 1.88 16 Total: -1.00 -74.02 373.39 2.32 -71.69 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.97 Total: 16.07 kcal Atomic # 6 Polarization: 15.77 SS G_CDS: 6.79 Total: 22.56 kcal Atomic # 7 Polarization: -121.02 SS G_CDS: -6.52 Total: -127.54 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.94 Total: -30.90 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -74.02 2.32 -71.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036752279.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.133 kcal (2) G-P(sol) polarization free energy of solvation -74.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.00 seconds