Wall clock time and date at job start Wed Apr 1 2020 05:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35928 * 117.00476 * 2 1 4 4 C 1.38855 * 120.40056 * 359.97438 * 3 2 1 5 5 N 1.31879 * 120.99624 * 180.02562 * 4 3 2 6 6 C 1.31684 * 121.94362 * 359.70391 * 5 4 3 7 7 C 1.39523 * 120.68646 * 0.58088 * 6 5 4 8 8 C 1.47854 * 120.52712 * 179.70356 * 7 6 5 9 9 O 1.21555 * 119.99972 * 234.33829 * 8 7 6 10 10 N 1.34775 * 120.00070 * 54.34152 * 8 7 6 11 11 C 1.46595 * 119.68097 * 355.97702 * 10 8 7 12 12 C 1.53957 * 110.57674 * 132.19620 * 11 10 8 13 13 C 1.51233 * 107.41074 * 50.83459 * 12 11 10 14 14 H 1.08999 * 108.30804 * 53.42572 * 13 12 11 15 15 C 1.55056 * 108.10302 * 295.40238 * 13 12 11 16 16 H 1.09003 * 112.08261 * 308.94596 * 15 13 12 17 17 C 1.53740 * 100.33947 * 190.74067 * 15 13 12 18 18 C 1.55286 * 101.84423 * 38.91904 * 17 15 13 19 19 N 1.45462 * 117.54148 * 177.79530 * 13 12 11 20 20 C 1.36938 * 126.40315 * 329.91671 * 19 13 12 21 21 H 1.08001 * 119.99902 * 359.71386 * 20 19 13 22 22 C 1.38813 * 120.00069 * 179.70936 * 20 19 13 23 23 N 1.31625 * 119.99679 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00175 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47333 * 90.00091 * 24 22 20 26 26 H 1.48499 * 109.47172 * 210.00613 * 24 22 20 27 27 H 1.48498 * 109.47148 * 330.00473 * 24 22 20 28 28 C 1.47721 * 119.68205 * 175.98938 * 10 8 7 29 29 C 1.38841 * 120.40857 * 180.02562 * 3 2 1 30 30 C 1.50696 * 120.87973 * 359.95761 * 29 3 2 31 31 H 1.09005 * 109.47248 * 59.99336 * 1 2 3 32 32 H 1.09000 * 109.47512 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47188 * 300.00289 * 1 2 3 34 34 H 1.07997 * 119.49864 * 359.97438 * 4 3 2 35 35 H 1.08004 * 119.65403 * 180.28859 * 6 5 4 36 36 H 1.09002 * 109.25562 * 252.47149 * 11 10 8 37 37 H 1.08998 * 109.26003 * 11.94850 * 11 10 8 38 38 H 1.08994 * 109.88301 * 170.51413 * 12 11 10 39 39 H 1.09001 * 109.87930 * 291.51917 * 12 11 10 40 40 H 1.09009 * 110.95378 * 280.78382 * 17 15 13 41 41 H 1.08999 * 110.95952 * 157.06342 * 17 15 13 42 42 H 1.09001 * 109.92258 * 218.17767 * 18 17 15 43 43 H 1.09000 * 109.92051 * 96.87091 * 18 17 15 44 44 H 0.96996 * 119.99483 * 179.97438 * 23 22 20 45 45 H 1.09000 * 110.06258 * 112.82856 * 28 10 8 46 46 H 1.08997 * 110.06943 * 351.25428 * 28 10 8 47 47 H 1.09004 * 109.46826 * 274.59461 * 30 29 3 48 48 H 1.09003 * 109.47273 * 34.58758 * 30 29 3 49 49 H 1.08996 * 109.47388 * 154.59405 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2981 2.3809 -0.0005 5 7 1.8847 3.5621 -0.0010 6 6 3.1954 3.6891 0.0047 7 6 4.0199 2.5636 -0.0005 8 6 5.4911 2.7103 -0.0007 9 8 6.1564 2.1636 -0.8586 10 7 6.0946 3.4502 0.9506 11 6 5.2811 4.1782 1.9289 12 6 5.8055 3.9359 3.3560 13 6 7.2921 4.2138 3.3451 14 1 7.4512 5.2096 2.9315 15 6 7.9709 3.1683 2.4229 16 1 7.6789 2.1488 2.6748 17 6 9.4496 3.4246 2.7569 18 6 9.3915 3.6767 4.2880 19 7 8.0072 4.0980 4.6065 20 6 7.4951 4.3295 5.8553 21 1 6.4652 4.6342 5.9686 22 6 8.2997 4.1723 6.9755 23 7 9.5549 3.8013 6.8373 24 14 7.6013 4.4887 8.6789 25 1 7.0284 3.2303 9.2206 26 1 8.6834 4.9666 9.5766 27 1 6.5369 5.5206 8.5936 28 6 7.5695 3.5199 0.9971 29 6 3.4321 1.2935 -0.0005 30 6 4.2810 0.0484 -0.0002 31 1 -0.3634 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8900 34 1 0.2197 2.3226 -0.0014 35 1 3.6367 4.6749 0.0088 36 1 5.3215 5.2447 1.7075 37 1 4.2482 3.8363 1.8632 38 1 5.3053 4.6074 4.0538 39 1 5.6269 2.9004 3.6457 40 1 9.8212 4.3041 2.2309 41 1 10.0582 2.5497 2.5286 42 1 10.0920 4.4658 4.5614 43 1 9.6332 2.7594 4.8248 44 1 10.1172 3.6918 7.6200 45 1 7.9041 4.5279 0.7520 46 1 8.0000 2.8016 0.2994 47 1 4.4179 -0.2976 1.0244 48 1 3.7864 -0.7288 -0.5830 49 1 5.2524 0.2708 -0.4415 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036752281.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:08 Heat of formation + Delta-G solvation = 2.376962 kcal Electronic energy + Delta-G solvation = -31276.063817 eV Core-core repulsion = 27204.631588 eV Total energy + Delta-G solvation = -4071.432229 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.38418 -40.09219 -38.60309 -37.97137 -35.50152 -34.02257 -32.81282 -31.63467 -31.22409 -29.53163 -28.31471 -28.03369 -27.76417 -25.21987 -24.34416 -22.98154 -22.74976 -22.22716 -20.24252 -19.99407 -19.29049 -18.13318 -17.74702 -16.87385 -16.57332 -16.36908 -16.08017 -15.89817 -15.16335 -15.02570 -14.47972 -14.45144 -14.14293 -13.92591 -13.88008 -13.34022 -13.14782 -13.07826 -13.00638 -12.92422 -12.50986 -12.44401 -12.32864 -11.99734 -11.83638 -11.68034 -11.50191 -11.44273 -10.86484 -10.83483 -10.73838 -10.39400 -10.15585 -10.08669 -9.89838 -9.69911 -9.62876 -9.55636 -9.43758 -8.73241 -8.64537 -8.60488 -6.86074 -5.73825 -3.07082 0.49473 0.92789 2.43163 2.76612 3.02830 3.37995 3.42399 3.43266 3.45037 4.06348 4.20077 4.33691 4.45869 4.47075 4.58939 4.72950 4.83343 4.96435 4.99815 5.04731 5.11553 5.20927 5.29690 5.30582 5.47199 5.50963 5.52435 5.54220 5.57040 5.76418 5.83655 5.89365 5.94330 5.99010 6.10455 6.14235 6.17535 6.21504 6.31470 6.43967 6.57873 6.60663 6.78534 6.80064 7.02749 7.33679 7.53118 7.55716 7.59387 7.78893 8.04559 8.22097 9.17159 9.80681 10.48482 11.38691 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013629 B = 0.002983 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.004111 B = 9385.521379 C =10389.388849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.071 3.929 4 C 0.034 3.966 5 N -0.453 5.453 6 C 0.098 3.902 7 C -0.139 4.139 8 C 0.565 3.435 9 O -0.534 6.534 10 N -0.595 5.595 11 C 0.103 3.897 12 C -0.129 4.129 13 C 0.169 3.831 14 H 0.019 0.981 15 C -0.124 4.124 16 H 0.079 0.921 17 C -0.135 4.135 18 C 0.177 3.823 19 N -0.594 5.594 20 C -0.226 4.226 21 H 0.078 0.922 22 C -0.008 4.008 23 N -0.921 5.921 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.127 3.873 29 C -0.024 4.024 30 C -0.124 4.124 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.039 0.961 43 H 0.054 0.946 44 H 0.252 0.748 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.078 0.922 48 H 0.077 0.923 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.082 -4.525 -15.224 21.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.217 6.217 3 C 0.023 3.977 4 C -0.124 4.124 5 N -0.162 5.162 6 C -0.061 4.061 7 C -0.144 4.144 8 C 0.352 3.648 9 O -0.412 6.412 10 N -0.326 5.326 11 C -0.020 4.020 12 C -0.169 4.169 13 C 0.060 3.940 14 H 0.037 0.963 15 C -0.145 4.145 16 H 0.098 0.902 17 C -0.174 4.174 18 C 0.053 3.947 19 N -0.318 5.318 20 C -0.354 4.354 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.568 5.568 24 Si 0.740 3.260 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.005 3.995 29 C -0.032 4.032 30 C -0.181 4.181 31 H 0.076 0.924 32 H 0.122 0.878 33 H 0.078 0.922 34 H 0.179 0.821 35 H 0.182 0.818 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.091 0.909 46 H 0.110 0.890 47 H 0.097 0.903 48 H 0.096 0.904 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.073 -4.250 -15.410 21.971 hybrid contribution -0.230 -0.390 1.125 1.213 sum -15.303 -4.640 -14.285 21.442 Atomic orbital electron populations 1.23154 0.77887 1.04535 1.01623 1.86100 1.21600 1.25528 1.88516 1.19719 0.92215 0.86084 0.99650 1.23032 1.00666 0.87063 1.01597 1.67545 1.11704 1.25945 1.11004 1.22861 0.88493 0.98160 0.96579 1.20720 0.95110 0.93943 1.04668 1.18010 0.86359 0.78705 0.81745 1.90758 1.65329 1.47921 1.37160 1.48271 1.07703 1.47387 1.29282 1.22043 0.94567 0.96236 0.89145 1.21843 0.98340 1.02724 0.93944 1.20494 0.90489 0.94948 0.88064 0.96332 1.22582 0.97560 1.00598 0.93711 0.90227 1.22716 0.94247 1.00361 1.00101 1.21535 0.86025 0.99602 0.87561 1.44202 1.07424 1.79938 1.00271 1.18989 0.95564 1.39276 0.81604 0.90393 1.24791 0.95999 1.01787 0.97820 1.69940 1.05600 1.53120 1.28185 0.86157 0.77728 0.77787 0.84321 1.21668 1.21692 1.20696 1.21700 0.77394 1.02263 0.98096 1.19662 0.90896 0.95484 0.97207 1.20897 1.00278 0.93540 1.03339 0.92370 0.87751 0.92233 0.82134 0.81802 0.91079 0.90052 0.90360 0.91481 0.92249 0.91999 0.94283 0.92744 0.93744 0.90915 0.89025 0.90347 0.90393 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.82 101.05 0.99 1.11 16 2 O -0.31 -2.91 9.75 -19.51 -0.19 -3.10 16 3 C 0.07 0.78 6.68 -39.13 -0.26 0.52 16 4 C 0.03 0.34 10.21 -17.30 -0.18 0.17 16 5 N -0.45 -5.30 10.34 -12.79 -0.13 -5.44 16 6 C 0.10 1.14 8.65 -17.14 -0.15 0.99 16 7 C -0.14 -1.80 4.78 -104.84 -0.50 -2.31 16 8 C 0.57 8.25 6.60 -12.33 -0.08 8.17 16 9 O -0.53 -9.08 14.60 5.32 0.08 -9.00 16 10 N -0.59 -8.36 3.00 -173.60 -0.52 -8.89 16 11 C 0.10 1.35 5.27 -3.49 -0.02 1.33 16 12 C -0.13 -2.14 5.48 -27.12 -0.15 -2.29 16 13 C 0.17 3.25 2.55 -68.29 -0.17 3.08 16 14 H 0.02 0.38 7.89 -51.93 -0.41 -0.03 16 15 C -0.12 -2.13 2.85 -89.53 -0.26 -2.39 16 16 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 17 C -0.14 -2.43 6.54 -25.13 -0.16 -2.60 16 18 C 0.18 4.17 5.45 -1.92 -0.01 4.16 16 19 N -0.59 -14.49 3.35 -163.45 -0.55 -15.04 16 20 C -0.23 -6.05 9.88 -15.06 -0.15 -6.20 16 21 H 0.08 2.00 7.21 -52.49 -0.38 1.62 16 22 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 23 N -0.92 -26.64 10.44 55.49 0.58 -26.06 16 24 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 C 0.13 1.85 5.94 -3.76 -0.02 1.83 16 29 C -0.02 -0.30 5.96 -103.76 -0.62 -0.91 16 30 C -0.12 -1.48 9.49 36.00 0.34 -1.14 16 31 H 0.06 0.24 7.67 -51.93 -0.40 -0.16 16 32 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.26 7.68 -51.93 -0.40 -0.14 16 34 H 0.16 1.13 6.30 -52.49 -0.33 0.80 16 35 H 0.16 1.62 7.37 -52.48 -0.39 1.23 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.98 4.87 -51.93 -0.25 0.72 16 38 H 0.08 1.31 7.62 -51.93 -0.40 0.92 16 39 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 40 H 0.06 0.98 8.12 -51.92 -0.42 0.56 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.04 1.01 7.77 -51.93 -0.40 0.61 16 43 H 0.05 1.43 7.21 -51.93 -0.37 1.06 16 44 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16 46 H 0.09 1.36 7.02 -51.93 -0.36 0.99 16 47 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.08 0.83 7.76 -51.93 -0.40 0.43 16 49 H 0.09 1.24 5.74 -51.93 -0.30 0.95 16 LS Contribution 379.48 15.07 5.72 5.72 Total: -1.00 -32.21 379.48 -8.84 -41.05 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -7.31 Total: 0.83 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -1.49 Total: 3.21 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.62 Total: -55.42 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -0.11 Total: -12.11 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.21 -8.84 -41.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036752281.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.429 kcal (2) G-P(sol) polarization free energy of solvation -32.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds