Wall clock time and date at job start Wed Apr 1 2020 05:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35928 * 117.00476 * 2 1 4 4 C 1.38855 * 120.40056 * 359.97438 * 3 2 1 5 5 N 1.31879 * 120.99624 * 180.02562 * 4 3 2 6 6 C 1.31684 * 121.94362 * 359.70391 * 5 4 3 7 7 C 1.39523 * 120.68646 * 0.58088 * 6 5 4 8 8 C 1.47854 * 120.52712 * 179.70356 * 7 6 5 9 9 O 1.21555 * 119.99972 * 234.33829 * 8 7 6 10 10 N 1.34775 * 120.00070 * 54.34152 * 8 7 6 11 11 C 1.46595 * 119.68097 * 355.97702 * 10 8 7 12 12 C 1.53957 * 110.57674 * 132.19620 * 11 10 8 13 13 C 1.51233 * 107.41074 * 50.83459 * 12 11 10 14 14 H 1.08999 * 108.30804 * 53.42572 * 13 12 11 15 15 C 1.55056 * 108.10302 * 295.40238 * 13 12 11 16 16 H 1.09003 * 112.08261 * 308.94596 * 15 13 12 17 17 C 1.53740 * 100.33947 * 190.74067 * 15 13 12 18 18 C 1.55286 * 101.84423 * 38.91904 * 17 15 13 19 19 N 1.45462 * 117.54148 * 177.79530 * 13 12 11 20 20 C 1.36938 * 126.40315 * 329.91671 * 19 13 12 21 21 H 1.08001 * 119.99902 * 359.71386 * 20 19 13 22 22 C 1.38813 * 120.00069 * 179.70936 * 20 19 13 23 23 N 1.31625 * 119.99679 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00175 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47333 * 90.00091 * 24 22 20 26 26 H 1.48499 * 109.47172 * 210.00613 * 24 22 20 27 27 H 1.48498 * 109.47148 * 330.00473 * 24 22 20 28 28 C 1.47721 * 119.68205 * 175.98938 * 10 8 7 29 29 C 1.38841 * 120.40857 * 180.02562 * 3 2 1 30 30 C 1.50696 * 120.87973 * 359.95761 * 29 3 2 31 31 H 1.09005 * 109.47248 * 59.99336 * 1 2 3 32 32 H 1.09000 * 109.47512 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47188 * 300.00289 * 1 2 3 34 34 H 1.07997 * 119.49864 * 359.97438 * 4 3 2 35 35 H 1.08004 * 119.65403 * 180.28859 * 6 5 4 36 36 H 1.09002 * 109.25562 * 252.47149 * 11 10 8 37 37 H 1.08998 * 109.26003 * 11.94850 * 11 10 8 38 38 H 1.08994 * 109.88301 * 170.51413 * 12 11 10 39 39 H 1.09001 * 109.87930 * 291.51917 * 12 11 10 40 40 H 1.09009 * 110.95378 * 280.78382 * 17 15 13 41 41 H 1.08999 * 110.95952 * 157.06342 * 17 15 13 42 42 H 1.09001 * 109.92258 * 218.17767 * 18 17 15 43 43 H 1.09000 * 109.92051 * 96.87091 * 18 17 15 44 44 H 0.96996 * 119.99483 * 179.97438 * 23 22 20 45 45 H 1.09000 * 110.06258 * 112.82856 * 28 10 8 46 46 H 1.08997 * 110.06943 * 351.25428 * 28 10 8 47 47 H 1.09004 * 109.46826 * 274.59461 * 30 29 3 48 48 H 1.09003 * 109.47273 * 34.58758 * 30 29 3 49 49 H 1.08996 * 109.47388 * 154.59405 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2981 2.3809 -0.0005 5 7 1.8847 3.5621 -0.0010 6 6 3.1954 3.6891 0.0047 7 6 4.0199 2.5636 -0.0005 8 6 5.4911 2.7103 -0.0007 9 8 6.1564 2.1636 -0.8586 10 7 6.0946 3.4502 0.9506 11 6 5.2811 4.1782 1.9289 12 6 5.8055 3.9359 3.3560 13 6 7.2921 4.2138 3.3451 14 1 7.4512 5.2096 2.9315 15 6 7.9709 3.1683 2.4229 16 1 7.6789 2.1488 2.6748 17 6 9.4496 3.4246 2.7569 18 6 9.3915 3.6767 4.2880 19 7 8.0072 4.0980 4.6065 20 6 7.4951 4.3295 5.8553 21 1 6.4652 4.6342 5.9686 22 6 8.2997 4.1723 6.9755 23 7 9.5549 3.8013 6.8373 24 14 7.6013 4.4887 8.6789 25 1 7.0284 3.2303 9.2206 26 1 8.6834 4.9666 9.5766 27 1 6.5369 5.5206 8.5936 28 6 7.5695 3.5199 0.9971 29 6 3.4321 1.2935 -0.0005 30 6 4.2810 0.0484 -0.0002 31 1 -0.3634 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8900 34 1 0.2197 2.3226 -0.0014 35 1 3.6367 4.6749 0.0088 36 1 5.3215 5.2447 1.7075 37 1 4.2482 3.8363 1.8632 38 1 5.3053 4.6074 4.0538 39 1 5.6269 2.9004 3.6457 40 1 9.8212 4.3041 2.2309 41 1 10.0582 2.5497 2.5286 42 1 10.0920 4.4658 4.5614 43 1 9.6332 2.7594 4.8248 44 1 10.1172 3.6918 7.6200 45 1 7.9041 4.5279 0.7520 46 1 8.0000 2.8016 0.2994 47 1 4.4179 -0.2976 1.0244 48 1 3.7864 -0.7288 -0.5830 49 1 5.2524 0.2708 -0.4415 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036752281.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:06 Heat of formation + Delta-G solvation = -18.010696 kcal Electronic energy + Delta-G solvation = -31276.947892 eV Core-core repulsion = 27204.631588 eV Total energy + Delta-G solvation = -4072.316304 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -42.31179 -41.18677 -39.82283 -38.90259 -36.91356 -34.92633 -34.56580 -33.08244 -32.30075 -31.07452 -29.65666 -28.89085 -28.47872 -26.77591 -25.74615 -24.09864 -23.92569 -23.30423 -21.89059 -21.35859 -20.50625 -19.18157 -18.57477 -18.37920 -17.59071 -17.38159 -17.01412 -16.86276 -16.85833 -16.22199 -15.99751 -15.67130 -15.23093 -15.17828 -14.88628 -14.69409 -14.37050 -14.29278 -14.04116 -13.87764 -13.84304 -13.69000 -13.31110 -13.12054 -13.10522 -12.96657 -12.75577 -12.67529 -12.50055 -12.35859 -12.12115 -12.00625 -11.78461 -11.60997 -11.52248 -11.34698 -11.02684 -10.69952 -10.56768 -10.43515 -9.78753 -9.50456 -8.85959 -7.82543 -5.16663 -0.37986 0.07668 1.38772 1.46518 1.47678 1.56106 1.79870 2.23053 2.50965 2.56251 3.18957 3.36174 3.40935 3.45818 3.50504 3.58927 3.80028 3.83084 3.96075 4.00635 4.14424 4.18101 4.21090 4.35976 4.38983 4.41110 4.48365 4.49994 4.59256 4.61694 4.65754 4.70080 4.77779 4.78287 4.82180 4.89325 4.98922 5.04606 5.07802 5.09744 5.20167 5.31893 5.42519 5.52968 5.54271 5.67760 5.78253 6.13924 6.21252 6.22482 6.72235 6.93181 7.10733 7.80981 8.49398 9.29324 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013629 B = 0.002983 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.004111 B = 9385.521379 C =10389.388849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.319 6.319 3 C 0.073 3.927 4 C 0.040 3.960 5 N -0.463 5.463 6 C 0.097 3.903 7 C -0.154 4.154 8 C 0.569 3.431 9 O -0.562 6.562 10 N -0.595 5.595 11 C 0.113 3.887 12 C -0.123 4.123 13 C 0.158 3.842 14 H 0.027 0.973 15 C -0.109 4.109 16 H 0.061 0.939 17 C -0.120 4.120 18 C 0.182 3.818 19 N -0.615 5.615 20 C -0.228 4.228 21 H 0.087 0.913 22 C -0.070 4.070 23 N -0.954 5.954 24 Si 0.973 3.027 25 H -0.289 1.289 26 H -0.298 1.298 27 H -0.266 1.266 28 C 0.135 3.865 29 C -0.044 4.044 30 C -0.118 4.118 31 H 0.073 0.927 32 H 0.122 0.878 33 H 0.071 0.929 34 H 0.194 0.806 35 H 0.181 0.819 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.005 0.995 43 H 0.015 0.985 44 H 0.244 0.756 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.077 0.923 48 H 0.087 0.913 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.026 -3.879 -16.648 24.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.025 3.975 4 C -0.117 4.117 5 N -0.172 5.172 6 C -0.061 4.061 7 C -0.159 4.159 8 C 0.357 3.643 9 O -0.442 6.442 10 N -0.326 5.326 11 C -0.009 4.009 12 C -0.162 4.162 13 C 0.051 3.949 14 H 0.044 0.956 15 C -0.130 4.130 16 H 0.079 0.921 17 C -0.159 4.159 18 C 0.057 3.943 19 N -0.340 5.340 20 C -0.357 4.357 21 H 0.105 0.895 22 C -0.263 4.263 23 N -0.604 5.604 24 Si 0.802 3.198 25 H -0.217 1.217 26 H -0.225 1.225 27 H -0.191 1.191 28 C 0.014 3.986 29 C -0.053 4.053 30 C -0.175 4.175 31 H 0.091 0.909 32 H 0.140 0.860 33 H 0.089 0.911 34 H 0.210 0.790 35 H 0.198 0.802 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.024 0.976 43 H 0.033 0.967 44 H 0.054 0.946 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.095 0.905 48 H 0.105 0.895 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.063 -3.592 -16.863 24.971 hybrid contribution 0.578 -0.661 1.535 1.768 sum -17.485 -4.253 -15.328 23.639 Atomic orbital electron populations 1.23507 0.75566 1.06294 1.02895 1.86095 1.23986 1.24903 1.88176 1.19734 0.91729 0.87017 0.99037 1.23541 1.02104 0.86277 0.99796 1.67628 1.11592 1.26617 1.11411 1.23082 0.88516 0.98379 0.96128 1.20617 0.94052 0.94734 1.06466 1.18227 0.87057 0.77822 0.81205 1.90741 1.66202 1.48878 1.38341 1.48278 1.07491 1.47440 1.29386 1.22046 0.94811 0.97617 0.86441 1.21756 0.96394 1.01541 0.96502 1.20738 0.92173 0.95744 0.86207 0.95572 1.22406 0.96471 0.98956 0.95133 0.92056 1.22582 0.95414 1.02070 0.95829 1.21305 0.85437 0.96494 0.91082 1.44488 1.08366 1.79765 1.01343 1.19401 0.95862 1.37641 0.82831 0.89523 1.25610 0.96462 1.02758 1.01448 1.70166 1.06829 1.54966 1.28401 0.85151 0.77048 0.77750 0.79881 1.21663 1.22486 1.19057 1.21593 0.77959 1.03325 0.95756 1.19826 0.92012 0.95379 0.98103 1.20803 0.99430 0.94000 1.03220 0.90875 0.85955 0.91063 0.78982 0.80164 0.88512 0.88532 0.90507 0.93262 0.90020 0.90400 0.97639 0.96666 0.94640 0.88968 0.88961 0.90469 0.89452 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.82 113.37 1.11 1.20 16 2 O -0.32 -5.37 9.75 -92.74 -0.90 -6.27 16 3 C 0.07 1.44 6.68 22.56 0.15 1.59 16 4 C 0.04 0.69 10.21 84.83 0.87 1.56 16 5 N -0.46 -9.50 10.34 -194.39 -2.01 -11.51 16 6 C 0.10 2.02 8.65 85.02 0.74 2.76 16 7 C -0.15 -3.74 4.78 -20.01 -0.10 -3.84 16 8 C 0.57 15.86 6.60 86.79 0.57 16.44 16 9 O -0.56 -18.76 14.60 -3.89 -0.06 -18.81 16 10 N -0.60 -15.58 3.00 -821.41 -2.46 -18.05 16 11 C 0.11 2.68 5.27 86.68 0.46 3.13 16 12 C -0.12 -3.91 5.48 30.34 0.17 -3.75 16 13 C 0.16 5.99 2.55 45.31 0.12 6.10 16 14 H 0.03 0.99 7.89 -2.39 -0.02 0.97 16 15 C -0.11 -3.67 2.85 -10.09 -0.03 -3.70 16 16 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 17 C -0.12 -4.27 6.54 31.63 0.21 -4.06 16 18 C 0.18 8.89 5.45 86.85 0.47 9.36 16 19 N -0.62 -30.54 3.35 -671.04 -2.25 -32.79 16 20 C -0.23 -12.39 9.88 84.03 0.83 -11.56 16 21 H 0.09 4.43 7.21 -2.91 -0.02 4.40 16 22 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 23 N -0.95 -57.55 10.44 21.65 0.23 -57.33 16 24 Si 0.97 45.48 29.55 68.60 2.03 47.50 16 25 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 26 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 27 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 28 C 0.14 3.69 5.94 85.90 0.51 4.20 16 29 C -0.04 -1.06 5.96 -19.31 -0.12 -1.17 16 30 C -0.12 -2.79 9.49 71.23 0.68 -2.12 16 31 H 0.07 0.33 7.67 -2.38 -0.02 0.32 16 32 H 0.12 0.45 8.14 -2.39 -0.02 0.44 16 33 H 0.07 0.37 7.68 -2.38 -0.02 0.35 16 34 H 0.19 1.92 6.30 -2.91 -0.02 1.90 16 35 H 0.18 2.99 7.37 -2.91 -0.02 2.97 16 36 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.10 2.05 4.87 -2.39 -0.01 2.04 16 38 H 0.08 2.47 7.62 -2.39 -0.02 2.45 16 39 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 40 H 0.08 2.56 8.12 -2.38 -0.02 2.54 16 41 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.01 0.29 7.77 -2.39 -0.02 0.27 16 43 H 0.01 0.84 7.21 -2.39 -0.02 0.82 16 44 H 0.24 14.44 8.31 -92.71 -0.77 13.67 16 45 H 0.09 2.21 8.07 -2.39 -0.02 2.19 16 46 H 0.09 2.58 7.02 -2.39 -0.02 2.56 16 47 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 48 H 0.09 1.82 7.76 -2.39 -0.02 1.80 16 49 H 0.07 2.00 5.74 -2.39 -0.01 1.98 16 Total: -1.00 -72.53 379.48 2.63 -69.90 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.96 Total: 14.71 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 7.10 Total: 12.64 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -6.50 Total: -119.67 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.96 Total: -25.08 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -72.53 2.63 -69.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036752281.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.890 kcal (2) G-P(sol) polarization free energy of solvation -72.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds