Wall clock time and date at job start Wed Apr 1 2020 05:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35921 * 117.00087 * 2 1 4 4 C 1.38851 * 120.40589 * 0.02562 * 3 2 1 5 5 N 1.31881 * 120.99860 * 179.97438 * 4 3 2 6 6 C 1.31681 * 121.94024 * 359.69316 * 5 4 3 7 7 C 1.39515 * 120.69283 * 0.59411 * 6 5 4 8 8 C 1.47857 * 120.53170 * 179.69834 * 7 6 5 9 9 O 1.21560 * 119.99750 * 126.10361 * 8 7 6 10 10 N 1.34772 * 120.00247 * 306.10353 * 8 7 6 11 11 C 1.46599 * 119.68032 * 354.22755 * 10 8 7 12 12 C 1.53958 * 110.57231 * 227.79999 * 11 10 8 13 13 C 1.51517 * 107.35100 * 308.94529 * 12 11 10 14 14 H 1.09003 * 109.28222 * 306.30140 * 13 12 11 15 15 C 1.55371 * 107.78643 * 64.85791 * 13 12 11 16 16 H 1.08996 * 111.50931 * 50.61729 * 15 13 12 17 17 C 1.53744 * 100.21999 * 168.51468 * 15 13 12 18 18 C 1.55295 * 101.87459 * 320.89171 * 17 15 13 19 19 N 1.45464 * 116.87055 * 181.60567 * 13 12 11 20 20 C 1.36939 * 126.40178 * 30.88748 * 19 13 12 21 21 H 1.08001 * 120.00251 * 359.97438 * 20 19 13 22 22 C 1.38812 * 119.99773 * 180.02562 * 20 19 13 23 23 N 1.31621 * 120.00208 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99917 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47143 * 89.99912 * 24 22 20 26 26 H 1.48506 * 109.47227 * 209.99428 * 24 22 20 27 27 H 1.48497 * 109.47185 * 329.99994 * 24 22 20 28 28 C 1.48915 * 119.82526 * 173.88732 * 10 8 7 29 29 C 1.38846 * 120.40369 * 180.02562 * 3 2 1 30 30 C 1.50698 * 120.88077 * 359.97438 * 29 3 2 31 31 H 1.09006 * 109.46816 * 59.99754 * 1 2 3 32 32 H 1.08998 * 109.46759 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46950 * 300.00416 * 1 2 3 34 34 H 1.07994 * 119.50010 * 359.95186 * 4 3 2 35 35 H 1.08009 * 119.65366 * 180.31776 * 6 5 4 36 36 H 1.08998 * 109.25288 * 107.52365 * 11 10 8 37 37 H 1.08995 * 109.25717 * 348.08417 * 11 10 8 38 38 H 1.09007 * 109.87579 * 189.48699 * 12 11 10 39 39 H 1.08997 * 109.94240 * 68.44801 * 12 11 10 40 40 H 1.09001 * 110.95436 * 79.04524 * 17 15 13 41 41 H 1.09000 * 110.95716 * 202.73268 * 17 15 13 42 42 H 1.08996 * 109.91963 * 141.84782 * 18 17 15 43 43 H 1.09000 * 109.91430 * 263.14836 * 18 17 15 44 44 H 0.96996 * 120.00219 * 180.02562 * 23 22 20 45 45 H 1.09005 * 109.91371 * 8.97273 * 28 10 8 46 46 H 1.08995 * 110.80852 * 247.01994 * 28 10 8 47 47 H 1.08990 * 109.47597 * 274.94060 * 30 29 3 48 48 H 1.09007 * 109.46763 * 34.94207 * 30 29 3 49 49 H 1.09001 * 109.46851 * 154.93716 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2982 2.3809 0.0005 5 7 1.8847 3.5621 0.0010 6 6 3.1954 3.6890 0.0071 7 6 4.0199 2.5636 0.0007 8 6 5.4912 2.7103 0.0008 9 8 6.1579 2.1489 0.8481 10 7 6.0931 3.4665 -0.9385 11 6 5.2982 4.0365 -2.0305 12 6 5.9824 3.7843 -3.3864 13 6 7.4193 4.2482 -3.2607 14 1 7.4351 5.2789 -2.9062 15 6 8.1223 3.3379 -2.2162 16 1 7.9652 2.2820 -2.4362 17 6 9.5878 3.7437 -2.4431 18 6 9.6415 3.8969 -3.9875 19 7 8.2526 4.1360 -4.4478 20 6 7.8327 4.2327 -5.7476 21 1 6.7898 4.4088 -5.9665 22 6 8.7472 4.1034 -6.7838 23 7 10.0180 3.8884 -6.5171 24 14 8.1743 4.2346 -8.5569 25 1 8.2502 5.6505 -8.9982 26 1 9.0458 3.3993 -9.4219 27 1 6.7716 3.7584 -8.6604 28 6 7.5576 3.7233 -0.8560 29 6 3.4321 1.2935 -0.0005 30 6 4.2810 0.0483 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 0.2198 2.3226 0.0002 35 1 3.6368 4.6748 0.0125 36 1 5.1924 5.1102 -1.8755 37 1 4.3106 3.5755 -2.0349 38 1 5.4767 4.3516 -4.1679 39 1 5.9556 2.7209 -3.6243 40 1 9.8112 4.6895 -1.9495 41 1 10.2661 2.9601 -2.1052 42 1 10.2730 4.7441 -4.2549 43 1 10.0303 2.9837 -4.4379 44 1 10.6571 3.7984 -7.2411 45 1 8.0002 3.1018 -0.0775 46 1 7.7554 4.7758 -0.6534 47 1 4.4130 -0.3015 1.0232 48 1 3.7893 -0.7266 -0.5888 49 1 5.2547 0.2724 -0.4363 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036752282.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:12 Heat of formation + Delta-G solvation = 1.005912 kcal Electronic energy + Delta-G solvation = -31221.771224 eV Core-core repulsion = 27150.279542 eV Total energy + Delta-G solvation = -4071.491682 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.35125 -40.03852 -38.58790 -37.94551 -35.43214 -34.04544 -32.78786 -31.58698 -31.19275 -29.50999 -28.30064 -28.05672 -27.76588 -25.18906 -24.33606 -22.98295 -22.66486 -22.25902 -20.22829 -19.97432 -19.30406 -18.08742 -17.74328 -16.83630 -16.57819 -16.37340 -16.09403 -15.88258 -15.19819 -14.97347 -14.47203 -14.40168 -14.10295 -13.92969 -13.81560 -13.36547 -13.17813 -13.04331 -12.98283 -12.90790 -12.56441 -12.43024 -12.34207 -11.98143 -11.84607 -11.67840 -11.50167 -11.44131 -10.87315 -10.80924 -10.75032 -10.40844 -10.14565 -10.07286 -9.90827 -9.71959 -9.63381 -9.54420 -9.41210 -8.75009 -8.64156 -8.59655 -6.85685 -5.73280 -3.06531 0.48974 0.92612 2.46374 2.74731 3.01783 3.38318 3.42970 3.43570 3.45306 4.06562 4.19797 4.33653 4.45844 4.47588 4.58894 4.72186 4.83027 4.97111 4.99313 5.06158 5.10907 5.22498 5.28269 5.31444 5.46735 5.51661 5.52657 5.55158 5.58143 5.77148 5.84115 5.88650 5.92371 5.98352 6.10525 6.13251 6.16166 6.20625 6.30991 6.44082 6.59003 6.62192 6.78614 6.79306 7.04414 7.35597 7.53613 7.55765 7.59879 7.79434 8.06006 8.22513 9.17523 9.81204 10.49054 11.39256 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014147 B = 0.002914 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.736292 B = 9606.373887 C =10581.347418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.071 3.929 4 C 0.033 3.967 5 N -0.453 5.453 6 C 0.100 3.900 7 C -0.139 4.139 8 C 0.565 3.435 9 O -0.532 6.532 10 N -0.599 5.599 11 C 0.109 3.891 12 C -0.128 4.128 13 C 0.168 3.832 14 H 0.021 0.979 15 C -0.124 4.124 16 H 0.080 0.920 17 C -0.136 4.136 18 C 0.177 3.823 19 N -0.595 5.595 20 C -0.226 4.226 21 H 0.078 0.922 22 C -0.008 4.008 23 N -0.921 5.921 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.128 3.872 29 C -0.026 4.026 30 C -0.109 4.109 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.161 0.839 35 H 0.164 0.836 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.039 0.961 43 H 0.055 0.945 44 H 0.252 0.748 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.076 0.924 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.379 -4.425 14.710 22.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.023 3.977 4 C -0.124 4.124 5 N -0.162 5.162 6 C -0.059 4.059 7 C -0.144 4.144 8 C 0.351 3.649 9 O -0.410 6.410 10 N -0.331 5.331 11 C -0.015 4.015 12 C -0.168 4.168 13 C 0.059 3.941 14 H 0.039 0.961 15 C -0.145 4.145 16 H 0.099 0.901 17 C -0.175 4.175 18 C 0.053 3.947 19 N -0.319 5.319 20 C -0.354 4.354 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.569 5.569 24 Si 0.740 3.260 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.007 3.993 29 C -0.035 4.035 30 C -0.165 4.165 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.077 0.923 34 H 0.179 0.821 35 H 0.181 0.819 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.110 0.890 46 H 0.093 0.907 47 H 0.101 0.899 48 H 0.094 0.906 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.355 -4.190 14.887 22.510 hybrid contribution -0.123 -0.449 -1.133 1.225 sum -16.478 -4.639 13.755 21.960 Atomic orbital electron populations 1.23155 0.77881 1.04535 1.01620 1.86101 1.21607 1.25531 1.88520 1.19716 0.92187 0.86090 0.99668 1.23030 1.00661 0.87065 1.01656 1.67546 1.11733 1.25929 1.10970 1.22833 0.88424 0.98147 0.96500 1.20771 0.95123 0.93887 1.04601 1.18006 0.86308 0.78844 0.81757 1.90786 1.65164 1.46616 1.38405 1.48562 1.09630 1.49946 1.24999 1.21911 0.94208 0.98449 0.86906 1.21891 0.97751 1.02451 0.94663 1.20654 0.89927 0.95180 0.88331 0.96126 1.22640 0.96866 1.00757 0.94216 0.90127 1.22721 0.94487 1.00039 1.00234 1.21551 0.86070 1.00668 0.86441 1.44232 1.03032 1.84434 1.00251 1.18986 0.93456 1.42295 0.80658 0.90400 1.24789 0.95575 1.02131 0.97914 1.69935 1.01012 1.55528 1.30389 0.86160 0.77549 0.77494 0.84803 1.21628 1.21719 1.20729 1.21898 0.77393 1.01215 0.98758 1.19703 0.90917 0.95520 0.97337 1.20706 0.98824 0.93475 1.03493 0.92257 0.87751 0.92349 0.82147 0.81872 0.91287 0.90467 0.90426 0.91398 0.92290 0.92019 0.94328 0.92721 0.93748 0.89025 0.90695 0.89898 0.90556 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.82 101.05 0.99 1.11 16 2 O -0.31 -2.87 9.76 -19.49 -0.19 -3.06 16 3 C 0.07 0.77 6.68 -39.13 -0.26 0.51 16 4 C 0.03 0.33 10.21 -17.30 -0.18 0.15 16 5 N -0.45 -5.25 10.34 -12.80 -0.13 -5.38 16 6 C 0.10 1.16 9.03 -17.14 -0.15 1.00 16 7 C -0.14 -1.78 4.51 -104.84 -0.47 -2.26 16 8 C 0.56 8.24 6.17 -12.33 -0.08 8.17 16 9 O -0.53 -9.13 15.42 5.31 0.08 -9.05 16 10 N -0.60 -8.41 3.01 -172.60 -0.52 -8.93 16 11 C 0.11 1.42 5.32 -3.49 -0.02 1.41 16 12 C -0.13 -2.14 5.45 -26.98 -0.15 -2.28 16 13 C 0.17 3.23 2.57 -67.98 -0.17 3.06 16 14 H 0.02 0.42 7.93 -51.93 -0.41 0.00 16 15 C -0.12 -2.14 2.84 -89.37 -0.25 -2.40 16 16 H 0.08 1.52 8.12 -51.93 -0.42 1.10 16 17 C -0.14 -2.45 6.53 -25.13 -0.16 -2.61 16 18 C 0.18 4.18 5.45 -1.86 -0.01 4.17 16 19 N -0.60 -14.53 3.35 -163.01 -0.55 -15.07 16 20 C -0.23 -6.05 9.86 -15.06 -0.15 -6.20 16 21 H 0.08 2.00 7.18 -52.49 -0.38 1.62 16 22 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 23 N -0.92 -26.69 10.44 55.49 0.58 -26.11 16 24 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 C 0.13 1.87 6.05 -3.10 -0.02 1.85 16 29 C -0.03 -0.32 5.96 -103.76 -0.62 -0.94 16 30 C -0.11 -1.29 9.10 36.00 0.33 -0.96 16 31 H 0.06 0.25 7.67 -51.93 -0.40 -0.15 16 32 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.23 7.67 -51.93 -0.40 -0.17 16 34 H 0.16 1.10 6.30 -52.49 -0.33 0.77 16 35 H 0.16 1.61 7.73 -52.48 -0.41 1.21 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.94 5.52 -51.93 -0.29 0.65 16 38 H 0.08 1.31 7.59 -51.93 -0.39 0.92 16 39 H 0.07 1.22 8.11 -51.93 -0.42 0.79 16 40 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 43 H 0.05 1.44 7.21 -51.93 -0.37 1.07 16 44 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.09 1.36 7.01 -51.93 -0.36 0.99 16 46 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 47 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.08 0.81 7.77 -51.93 -0.40 0.41 16 49 H 0.07 1.00 6.70 -51.93 -0.35 0.65 16 LS Contribution 381.62 15.07 5.75 5.75 Total: -1.00 -32.29 381.62 -8.88 -41.17 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -7.41 Total: 0.48 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -1.47 Total: 3.46 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.62 Total: -55.50 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.11 Total: -12.11 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.29 -8.88 -41.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036752282.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.178 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds