Wall clock time and date at job start Wed Apr 1 2020 05:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35921 * 117.00087 * 2 1 4 4 C 1.38851 * 120.40589 * 0.02562 * 3 2 1 5 5 N 1.31881 * 120.99860 * 179.97438 * 4 3 2 6 6 C 1.31681 * 121.94024 * 359.69316 * 5 4 3 7 7 C 1.39515 * 120.69283 * 0.59411 * 6 5 4 8 8 C 1.47857 * 120.53170 * 179.69834 * 7 6 5 9 9 O 1.21560 * 119.99750 * 126.10361 * 8 7 6 10 10 N 1.34772 * 120.00247 * 306.10353 * 8 7 6 11 11 C 1.46599 * 119.68032 * 354.22755 * 10 8 7 12 12 C 1.53958 * 110.57231 * 227.79999 * 11 10 8 13 13 C 1.51517 * 107.35100 * 308.94529 * 12 11 10 14 14 H 1.09003 * 109.28222 * 306.30140 * 13 12 11 15 15 C 1.55371 * 107.78643 * 64.85791 * 13 12 11 16 16 H 1.08996 * 111.50931 * 50.61729 * 15 13 12 17 17 C 1.53744 * 100.21999 * 168.51468 * 15 13 12 18 18 C 1.55295 * 101.87459 * 320.89171 * 17 15 13 19 19 N 1.45464 * 116.87055 * 181.60567 * 13 12 11 20 20 C 1.36939 * 126.40178 * 30.88748 * 19 13 12 21 21 H 1.08001 * 120.00251 * 359.97438 * 20 19 13 22 22 C 1.38812 * 119.99773 * 180.02562 * 20 19 13 23 23 N 1.31621 * 120.00208 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99917 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47143 * 89.99912 * 24 22 20 26 26 H 1.48506 * 109.47227 * 209.99428 * 24 22 20 27 27 H 1.48497 * 109.47185 * 329.99994 * 24 22 20 28 28 C 1.48915 * 119.82526 * 173.88732 * 10 8 7 29 29 C 1.38846 * 120.40369 * 180.02562 * 3 2 1 30 30 C 1.50698 * 120.88077 * 359.97438 * 29 3 2 31 31 H 1.09006 * 109.46816 * 59.99754 * 1 2 3 32 32 H 1.08998 * 109.46759 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46950 * 300.00416 * 1 2 3 34 34 H 1.07994 * 119.50010 * 359.95186 * 4 3 2 35 35 H 1.08009 * 119.65366 * 180.31776 * 6 5 4 36 36 H 1.08998 * 109.25288 * 107.52365 * 11 10 8 37 37 H 1.08995 * 109.25717 * 348.08417 * 11 10 8 38 38 H 1.09007 * 109.87579 * 189.48699 * 12 11 10 39 39 H 1.08997 * 109.94240 * 68.44801 * 12 11 10 40 40 H 1.09001 * 110.95436 * 79.04524 * 17 15 13 41 41 H 1.09000 * 110.95716 * 202.73268 * 17 15 13 42 42 H 1.08996 * 109.91963 * 141.84782 * 18 17 15 43 43 H 1.09000 * 109.91430 * 263.14836 * 18 17 15 44 44 H 0.96996 * 120.00219 * 180.02562 * 23 22 20 45 45 H 1.09005 * 109.91371 * 8.97273 * 28 10 8 46 46 H 1.08995 * 110.80852 * 247.01994 * 28 10 8 47 47 H 1.08990 * 109.47597 * 274.94060 * 30 29 3 48 48 H 1.09007 * 109.46763 * 34.94207 * 30 29 3 49 49 H 1.09001 * 109.46851 * 154.93716 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2982 2.3809 0.0005 5 7 1.8847 3.5621 0.0010 6 6 3.1954 3.6890 0.0071 7 6 4.0199 2.5636 0.0007 8 6 5.4912 2.7103 0.0008 9 8 6.1579 2.1489 0.8481 10 7 6.0931 3.4665 -0.9385 11 6 5.2982 4.0365 -2.0305 12 6 5.9824 3.7843 -3.3864 13 6 7.4193 4.2482 -3.2607 14 1 7.4351 5.2789 -2.9062 15 6 8.1223 3.3379 -2.2162 16 1 7.9652 2.2820 -2.4362 17 6 9.5878 3.7437 -2.4431 18 6 9.6415 3.8969 -3.9875 19 7 8.2526 4.1360 -4.4478 20 6 7.8327 4.2327 -5.7476 21 1 6.7898 4.4088 -5.9665 22 6 8.7472 4.1034 -6.7838 23 7 10.0180 3.8884 -6.5171 24 14 8.1743 4.2346 -8.5569 25 1 8.2502 5.6505 -8.9982 26 1 9.0458 3.3993 -9.4219 27 1 6.7716 3.7584 -8.6604 28 6 7.5576 3.7233 -0.8560 29 6 3.4321 1.2935 -0.0005 30 6 4.2810 0.0483 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 0.2198 2.3226 0.0002 35 1 3.6368 4.6748 0.0125 36 1 5.1924 5.1102 -1.8755 37 1 4.3106 3.5755 -2.0349 38 1 5.4767 4.3516 -4.1679 39 1 5.9556 2.7209 -3.6243 40 1 9.8112 4.6895 -1.9495 41 1 10.2661 2.9601 -2.1052 42 1 10.2730 4.7441 -4.2549 43 1 10.0303 2.9837 -4.4379 44 1 10.6571 3.7984 -7.2411 45 1 8.0002 3.1018 -0.0775 46 1 7.7554 4.7758 -0.6534 47 1 4.4130 -0.3015 1.0232 48 1 3.7893 -0.7266 -0.5888 49 1 5.2547 0.2724 -0.4363 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036752282.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:11 Heat of formation + Delta-G solvation = -19.475952 kcal Electronic energy + Delta-G solvation = -31222.659384 eV Core-core repulsion = 27150.279542 eV Total energy + Delta-G solvation = -4072.379842 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.26033 -41.14491 -39.79887 -38.88321 -36.84892 -34.94465 -34.54822 -33.03853 -32.26472 -31.03675 -29.65854 -28.90390 -28.46551 -26.76253 -25.72494 -24.08231 -23.85583 -23.33305 -21.88338 -21.33885 -20.51542 -19.13307 -18.57269 -18.35604 -17.54636 -17.38821 -17.01653 -16.86931 -16.85684 -16.22949 -15.94587 -15.65191 -15.17849 -15.13933 -14.90130 -14.64226 -14.36846 -14.28585 -14.02902 -13.88486 -13.85848 -13.70579 -13.30749 -13.14441 -13.09327 -12.94800 -12.75362 -12.69459 -12.48694 -12.35412 -12.14256 -12.00508 -11.78749 -11.60687 -11.53041 -11.35766 -11.00237 -10.69841 -10.60145 -10.41591 -9.77956 -9.50918 -8.85959 -7.82438 -5.16523 -0.37714 0.08615 1.42469 1.46344 1.47670 1.55855 1.77516 2.22980 2.51058 2.57884 3.20413 3.36470 3.40905 3.45591 3.51852 3.59729 3.80568 3.83398 3.96249 4.02191 4.14744 4.18435 4.22503 4.36485 4.39470 4.41658 4.45351 4.49735 4.60285 4.62082 4.66246 4.70877 4.77898 4.78516 4.81858 4.89536 4.97941 5.04302 5.04720 5.09729 5.20699 5.31297 5.42307 5.52791 5.55481 5.68030 5.78332 6.14393 6.21925 6.23609 6.73270 6.94476 7.10675 7.81073 8.49565 9.29469 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014147 B = 0.002914 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.736292 B = 9606.373887 C =10581.347418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.319 6.319 3 C 0.073 3.927 4 C 0.040 3.960 5 N -0.463 5.463 6 C 0.100 3.900 7 C -0.153 4.153 8 C 0.569 3.431 9 O -0.563 6.563 10 N -0.599 5.599 11 C 0.119 3.881 12 C -0.122 4.122 13 C 0.158 3.842 14 H 0.030 0.970 15 C -0.109 4.109 16 H 0.059 0.941 17 C -0.121 4.121 18 C 0.181 3.819 19 N -0.616 5.616 20 C -0.228 4.228 21 H 0.087 0.913 22 C -0.071 4.071 23 N -0.954 5.954 24 Si 0.973 3.027 25 H -0.287 1.287 26 H -0.299 1.299 27 H -0.268 1.268 28 C 0.137 3.863 29 C -0.046 4.046 30 C -0.102 4.102 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.073 0.927 34 H 0.194 0.806 35 H 0.180 0.820 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.005 0.995 43 H 0.015 0.985 44 H 0.244 0.756 45 H 0.091 0.909 46 H 0.098 0.902 47 H 0.082 0.918 48 H 0.084 0.916 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.557 -3.812 15.995 25.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.025 3.975 4 C -0.117 4.117 5 N -0.172 5.172 6 C -0.058 4.058 7 C -0.158 4.158 8 C 0.356 3.644 9 O -0.442 6.442 10 N -0.330 5.330 11 C -0.003 4.003 12 C -0.161 4.161 13 C 0.051 3.949 14 H 0.048 0.952 15 C -0.130 4.130 16 H 0.078 0.922 17 C -0.159 4.159 18 C 0.057 3.943 19 N -0.341 5.341 20 C -0.357 4.357 21 H 0.105 0.895 22 C -0.263 4.263 23 N -0.604 5.604 24 Si 0.802 3.198 25 H -0.214 1.214 26 H -0.226 1.226 27 H -0.192 1.192 28 C 0.015 3.985 29 C -0.055 4.055 30 C -0.159 4.159 31 H 0.090 0.910 32 H 0.140 0.860 33 H 0.091 0.909 34 H 0.210 0.790 35 H 0.197 0.803 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.024 0.976 43 H 0.033 0.967 44 H 0.054 0.946 45 H 0.110 0.890 46 H 0.116 0.884 47 H 0.101 0.899 48 H 0.103 0.897 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.583 -3.568 16.196 25.662 hybrid contribution 0.756 -0.710 -1.502 1.826 sum -18.827 -4.278 14.694 24.263 Atomic orbital electron populations 1.23509 0.75557 1.06288 1.02900 1.86097 1.23993 1.24898 1.88175 1.19722 0.91669 0.87024 0.99040 1.23539 1.02097 0.86263 0.99807 1.67631 1.11598 1.26612 1.11392 1.23037 0.88443 0.98321 0.96016 1.20645 0.93971 0.94693 1.06477 1.18239 0.87054 0.77914 0.81166 1.90766 1.66087 1.47699 1.39659 1.48564 1.09435 1.49899 1.25150 1.21892 0.93969 1.00101 0.84380 1.21800 0.96295 1.01004 0.97013 1.20902 0.91145 0.95982 0.86882 0.95211 1.22465 0.96021 0.99066 0.95436 0.92233 1.22586 0.95597 1.01884 0.95867 1.21322 0.85557 0.97299 0.90162 1.44522 1.04236 1.84251 1.01063 1.19398 0.93800 1.40464 0.82013 0.89532 1.25609 0.95810 1.03068 1.01827 1.70163 1.02017 1.57395 1.30825 0.85152 0.77469 0.77146 0.80060 1.21392 1.22605 1.19226 1.21813 0.77675 1.02466 0.96500 1.19853 0.92035 0.95363 0.98231 1.20618 0.97896 0.93956 1.03424 0.91036 0.85970 0.90888 0.78982 0.80308 0.88635 0.89071 0.90581 0.93334 0.89928 0.90507 0.97641 0.96709 0.94648 0.89028 0.88435 0.89947 0.89675 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.82 113.37 1.11 1.19 16 2 O -0.32 -5.24 9.76 -92.66 -0.90 -6.15 16 3 C 0.07 1.43 6.68 22.56 0.15 1.58 16 4 C 0.04 0.68 10.21 84.83 0.87 1.55 16 5 N -0.46 -9.36 10.34 -194.40 -2.01 -11.37 16 6 C 0.10 2.06 9.03 85.02 0.77 2.83 16 7 C -0.15 -3.69 4.51 -20.01 -0.09 -3.78 16 8 C 0.57 15.90 6.17 86.79 0.54 16.43 16 9 O -0.56 -19.01 15.42 -3.90 -0.06 -19.07 16 10 N -0.60 -15.69 3.01 -818.25 -2.47 -18.16 16 11 C 0.12 2.83 5.32 86.68 0.46 3.30 16 12 C -0.12 -3.92 5.45 30.43 0.17 -3.75 16 13 C 0.16 5.97 2.57 45.52 0.12 6.08 16 14 H 0.03 1.12 7.93 -2.39 -0.02 1.10 16 15 C -0.11 -3.70 2.84 -9.98 -0.03 -3.72 16 16 H 0.06 2.27 8.12 -2.39 -0.02 2.25 16 17 C -0.12 -4.29 6.53 31.63 0.21 -4.09 16 18 C 0.18 8.90 5.45 86.83 0.47 9.37 16 19 N -0.62 -30.64 3.35 -669.65 -2.24 -32.88 16 20 C -0.23 -12.38 9.86 84.03 0.83 -11.55 16 21 H 0.09 4.43 7.18 -2.91 -0.02 4.41 16 22 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 23 N -0.95 -57.72 10.44 21.65 0.23 -57.49 16 24 Si 0.97 45.59 29.55 68.60 2.03 47.61 16 25 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 26 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 28 C 0.14 3.70 6.05 85.66 0.52 4.22 16 29 C -0.05 -1.08 5.96 -19.30 -0.12 -1.20 16 30 C -0.10 -2.41 9.10 71.24 0.65 -1.77 16 31 H 0.07 0.34 7.67 -2.38 -0.02 0.32 16 32 H 0.12 0.41 8.14 -2.39 -0.02 0.40 16 33 H 0.07 0.31 7.67 -2.39 -0.02 0.29 16 34 H 0.19 1.84 6.30 -2.91 -0.02 1.82 16 35 H 0.18 2.96 7.73 -2.91 -0.02 2.94 16 36 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.09 1.98 5.52 -2.39 -0.01 1.97 16 38 H 0.08 2.46 7.59 -2.38 -0.02 2.45 16 39 H 0.05 1.73 8.11 -2.39 -0.02 1.71 16 40 H 0.08 2.57 8.11 -2.39 -0.02 2.56 16 41 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.01 0.29 7.77 -2.39 -0.02 0.27 16 43 H 0.01 0.82 7.21 -2.39 -0.02 0.80 16 44 H 0.24 14.47 8.31 -92.71 -0.77 13.70 16 45 H 0.09 2.56 7.01 -2.38 -0.02 2.54 16 46 H 0.10 2.27 8.08 -2.39 -0.02 2.25 16 47 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.08 1.77 7.77 -2.38 -0.02 1.76 16 49 H 0.05 1.49 6.70 -2.39 -0.02 1.48 16 Total: -1.00 -72.92 381.62 2.61 -70.30 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.96 Total: 14.04 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 7.09 Total: 13.16 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -6.49 Total: -119.90 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.96 Total: -25.21 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -72.92 2.61 -70.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036752282.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.828 kcal (2) G-P(sol) polarization free energy of solvation -72.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds