Wall clock time and date at job start Wed Apr 1 2020 03:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38354 * 119.40940 * 2 1 4 4 C 1.38333 * 119.45810 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.82598 * 179.97438 * 4 3 2 6 6 C 1.39991 * 118.35115 * 359.97438 * 4 3 2 7 7 C 1.47521 * 120.59639 * 179.97438 * 6 4 3 8 8 O 1.21593 * 119.99875 * 89.99961 * 7 6 4 9 9 N 1.34773 * 120.00175 * 270.27132 * 7 6 4 10 10 C 1.47149 * 121.00980 * 359.45247 * 9 7 6 11 11 C 1.52275 * 107.60683 * 122.90905 * 10 9 7 12 12 C 1.51143 * 111.74326 * 53.98359 * 11 10 9 13 13 H 1.09005 * 108.46140 * 185.28297 * 12 11 10 14 14 C 1.53994 * 113.17312 * 305.53913 * 12 11 10 15 15 H 1.09000 * 112.71968 * 284.11760 * 14 12 11 16 16 C 1.56018 * 100.38735 * 162.97463 * 14 12 11 17 17 C 1.54497 * 102.61892 * 323.13431 * 16 14 12 18 18 N 1.46464 * 112.67753 * 65.34362 * 12 11 10 19 19 C 1.36937 * 126.05641 * 29.82328 * 18 12 11 20 20 H 1.08000 * 119.99766 * 359.97438 * 19 18 12 21 21 C 1.38813 * 120.00084 * 179.97438 * 19 18 12 22 22 N 1.31614 * 120.00111 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00090 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47072 * 89.99705 * 23 21 19 25 25 H 1.48500 * 109.47409 * 210.00150 * 23 21 19 26 26 H 1.48502 * 109.47069 * 330.00410 * 23 21 19 27 27 C 1.46521 * 121.01435 * 179.72315 * 9 7 6 28 28 C 1.40274 * 118.80374 * 0.25207 * 6 4 3 29 29 O 1.35425 * 119.79946 * 179.73049 * 28 6 4 30 30 N 1.31878 * 119.40507 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47069 * 90.00365 * 1 2 3 32 32 H 1.08996 * 109.47121 * 210.00546 * 1 2 3 33 33 H 1.09004 * 109.47120 * 330.00332 * 1 2 3 34 34 H 1.08001 * 120.27134 * 359.97438 * 3 2 1 35 35 H 1.09005 * 109.47354 * 270.02742 * 5 4 3 36 36 H 1.09008 * 109.46938 * 30.02219 * 5 4 3 37 37 H 1.08997 * 109.47549 * 150.02184 * 5 4 3 38 38 H 1.08996 * 109.81705 * 242.10100 * 10 9 7 39 39 H 1.09001 * 109.81581 * 3.00841 * 10 9 7 40 40 H 1.09001 * 108.28780 * 293.73770 * 11 10 9 41 41 H 1.08997 * 109.31960 * 174.92616 * 11 10 9 42 42 H 1.09004 * 110.78063 * 81.41376 * 16 14 12 43 43 H 1.08993 * 110.77820 * 204.84971 * 16 14 12 44 44 H 1.09010 * 109.90017 * 263.45714 * 17 16 14 45 45 H 1.08996 * 110.05480 * 142.29703 * 17 16 14 46 46 H 0.97001 * 120.00246 * 180.02562 * 22 21 19 47 47 H 1.08997 * 109.34568 * 355.83090 * 27 9 7 48 48 H 1.09001 * 109.34617 * 115.36896 * 27 9 7 49 49 H 0.96692 * 114.00804 * 89.99824 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5697 1.2064 -0.0005 5 6 4.3409 2.5012 -0.0011 6 6 4.2356 -0.0250 -0.0005 7 6 5.7097 -0.0816 -0.0016 8 8 6.3180 -0.1044 1.0509 9 7 6.3824 -0.1024 -1.1693 10 6 5.6686 -0.0816 -2.4559 11 6 6.1710 1.1220 -3.2419 12 6 7.6768 1.1174 -3.3712 13 1 7.9844 2.0435 -3.8570 14 6 8.4011 1.0172 -2.0160 15 1 8.3915 1.9565 -1.4630 16 6 9.8243 0.5867 -2.4887 17 6 9.5156 -0.3570 -3.6725 18 7 8.1717 -0.0075 -4.1681 19 6 7.5044 -0.6253 -5.1918 20 1 6.5183 -0.2879 -5.4749 21 6 8.0953 -1.6853 -5.8657 22 7 9.2969 -2.0968 -5.5205 23 14 7.1847 -2.5286 -7.2618 24 1 7.5116 -1.8550 -8.5443 25 1 7.5965 -3.9536 -7.3321 26 1 5.7219 -2.4474 -7.0190 27 6 7.8465 -0.1523 -1.1963 28 6 3.4758 -1.2041 -0.0054 29 8 4.0991 -2.4064 -0.0110 30 7 2.1545 -1.1489 -0.0005 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6412 2.1375 -0.0004 35 1 4.5260 2.8134 -1.0290 36 1 3.7625 3.2688 0.5131 37 1 5.2918 2.3581 0.5120 38 1 5.8814 -0.9949 -3.0114 39 1 4.5960 0.0046 -2.2820 40 1 5.8598 2.0262 -2.7188 41 1 5.7265 1.1138 -4.2371 42 1 10.3987 1.4508 -2.8226 43 1 10.3502 0.0540 -1.6965 44 1 9.5283 -1.3931 -3.3341 45 1 10.2513 -0.2163 -4.4643 46 1 9.7100 -2.8372 -5.9916 47 1 8.2287 -0.0925 -0.1773 48 1 8.1675 -1.0923 -1.6452 49 1 4.2806 -2.7596 0.8707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036786048.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:14 Heat of formation + Delta-G solvation = -10.302004 kcal Electronic energy + Delta-G solvation = -32277.933808 eV Core-core repulsion = 28205.951779 eV Total energy + Delta-G solvation = -4071.982030 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 5.68 seconds Orbital eigenvalues (eV) -41.15618 -39.72629 -38.12554 -37.43572 -35.02487 -34.32816 -32.79408 -31.94006 -31.67153 -29.54672 -28.56952 -27.83687 -27.38045 -25.27848 -24.14153 -23.17765 -22.52853 -21.73427 -20.13967 -19.87573 -18.53395 -18.41052 -17.39926 -17.17824 -16.34878 -16.16006 -15.61781 -15.21465 -14.78365 -14.55223 -14.36696 -14.29133 -13.94640 -13.75506 -13.51003 -13.30213 -13.18471 -12.95170 -12.68800 -12.62661 -12.45902 -12.21147 -12.11655 -12.01678 -11.74621 -11.56098 -11.44439 -11.12370 -11.05595 -10.79880 -10.65944 -10.23531 -10.13697 -9.96420 -9.94491 -9.73281 -9.66071 -9.60207 -9.39107 -8.90239 -8.61493 -8.23223 -6.83849 -5.73313 -3.06157 0.64629 0.93475 2.65777 3.14310 3.23843 3.38606 3.44054 3.45898 3.57731 4.26324 4.33352 4.47358 4.54661 4.80472 4.98848 5.08576 5.14202 5.16748 5.22654 5.31117 5.32124 5.38524 5.39884 5.50452 5.55323 5.59285 5.60279 5.74700 5.75780 5.82545 5.87218 5.95223 6.03107 6.09106 6.25903 6.27946 6.28597 6.33459 6.42726 6.53430 6.66392 6.74826 6.86325 6.90847 7.33331 7.54585 7.59514 7.66994 7.73081 7.80322 8.23054 8.28967 9.19009 9.81219 10.48243 11.38723 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012177 B = 0.003958 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.853091 B = 7072.454628 C = 8123.070144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.163 3.837 3 C -0.187 4.187 4 C 0.009 3.991 5 C -0.124 4.124 6 C -0.189 4.189 7 C 0.574 3.426 8 O -0.549 6.549 9 N -0.583 5.583 10 C 0.119 3.881 11 C -0.127 4.127 12 C 0.172 3.828 13 H 0.019 0.981 14 C -0.115 4.115 15 H 0.077 0.923 16 C -0.141 4.141 17 C 0.176 3.824 18 N -0.594 5.594 19 C -0.226 4.226 20 H 0.078 0.922 21 C -0.004 4.004 22 N -0.919 5.919 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.125 3.875 28 C 0.353 3.647 29 O -0.472 6.472 30 N -0.506 5.506 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.047 0.953 45 H 0.043 0.957 46 H 0.252 0.748 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.768 8.660 12.285 19.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.026 3.974 3 C -0.207 4.207 4 C 0.001 3.999 5 C -0.180 4.180 6 C -0.196 4.196 7 C 0.360 3.640 8 O -0.429 6.429 9 N -0.313 5.313 10 C -0.004 4.004 11 C -0.166 4.166 12 C 0.064 3.936 13 H 0.037 0.963 14 C -0.136 4.136 15 H 0.096 0.904 16 C -0.180 4.180 17 C 0.051 3.949 18 N -0.320 5.320 19 C -0.354 4.354 20 H 0.096 0.904 21 C -0.201 4.201 22 N -0.566 5.566 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.003 3.997 28 C 0.174 3.826 29 O -0.279 6.279 30 N -0.226 5.226 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.161 0.839 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.098 0.902 48 H 0.099 0.901 49 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -12.818 7.681 12.059 19.202 hybrid contribution 0.103 0.025 -0.506 0.517 sum -12.715 7.706 11.553 18.829 Atomic orbital electron populations 1.20782 0.88248 1.03709 1.03544 1.21140 0.96911 0.87099 0.92296 1.21748 0.93598 0.99551 1.05834 1.20246 0.93616 0.94217 0.91776 1.20951 1.00395 0.92984 1.03714 1.20882 0.95298 0.94062 1.09340 1.17742 0.85894 0.76494 0.83897 1.90769 1.69214 1.51850 1.31040 1.48019 1.07619 1.69992 1.05632 1.21591 0.94561 1.01160 0.83064 1.21478 0.98251 0.96623 1.00287 1.20248 0.91085 0.92306 0.89979 0.96330 1.22742 0.97010 0.97212 0.96609 0.90447 1.23126 0.94886 1.00282 0.99712 1.21251 0.86799 0.95292 0.91524 1.44326 1.15440 1.35554 1.36656 1.18933 0.98980 1.10487 1.06989 0.90423 1.24751 0.96784 0.98895 0.99678 1.69944 1.14472 1.29367 1.42831 0.86211 0.78883 0.78941 0.82285 1.21683 1.21723 1.20719 1.21614 0.77807 0.99620 1.00630 1.19014 0.86293 0.84568 0.92742 1.84744 1.76614 1.32503 1.34064 1.67042 1.09160 1.30412 1.16010 0.89892 0.90208 0.90321 0.83915 0.89548 0.90296 0.90460 0.89046 0.91637 0.93078 0.90533 0.92288 0.91951 0.93502 0.93903 0.93779 0.90160 0.90063 0.73674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.16 36.01 0.37 -0.40 16 2 C 0.16 1.80 6.78 -82.53 -0.56 1.24 16 3 C -0.19 -1.87 9.41 -39.50 -0.37 -2.24 16 4 C 0.01 0.11 5.89 -103.93 -0.61 -0.50 16 5 C -0.12 -1.25 9.69 36.01 0.35 -0.90 16 6 C -0.19 -2.79 3.66 -104.69 -0.38 -3.18 16 7 C 0.57 9.70 5.31 -12.48 -0.07 9.64 16 8 O -0.55 -10.57 16.53 5.28 0.09 -10.48 16 9 N -0.58 -10.04 2.93 -174.70 -0.51 -10.55 16 10 C 0.12 2.06 6.26 -4.06 -0.03 2.03 16 11 C -0.13 -2.15 5.09 -28.04 -0.14 -2.29 16 12 C 0.17 3.30 2.90 -68.37 -0.20 3.10 16 13 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 14 C -0.12 -1.98 3.87 -88.38 -0.34 -2.32 16 15 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 16 C -0.14 -2.54 6.29 -24.33 -0.15 -2.69 16 17 C 0.18 4.06 4.64 -2.74 -0.01 4.05 16 18 N -0.59 -13.98 3.12 -164.49 -0.51 -14.49 16 19 C -0.23 -5.86 9.00 -15.06 -0.14 -5.99 16 20 H 0.08 1.94 6.66 -52.49 -0.35 1.59 16 21 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 22 N -0.92 -26.20 10.38 55.49 0.58 -25.63 16 23 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.13 2.24 5.45 -3.92 -0.02 2.21 16 28 C 0.35 5.28 7.76 -16.61 -0.13 5.15 16 29 O -0.47 -6.96 13.01 -17.97 -0.23 -7.19 16 30 N -0.51 -7.07 10.28 -9.21 -0.09 -7.16 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 34 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 35 H 0.09 0.82 7.74 -51.93 -0.40 0.42 16 36 H 0.08 0.58 8.10 -51.92 -0.42 0.16 16 37 H 0.08 0.92 7.19 -51.93 -0.37 0.55 16 38 H 0.09 1.90 7.48 -51.93 -0.39 1.51 16 39 H 0.07 1.06 6.32 -51.93 -0.33 0.73 16 40 H 0.05 0.74 7.74 -51.93 -0.40 0.34 16 41 H 0.08 1.35 6.97 -51.93 -0.36 0.98 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.06 1.02 7.97 -51.93 -0.41 0.61 16 44 H 0.05 1.21 6.99 -51.92 -0.36 0.84 16 45 H 0.04 1.11 7.56 -51.93 -0.39 0.72 16 46 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 47 H 0.08 1.41 6.99 -51.93 -0.36 1.05 16 48 H 0.08 1.65 6.80 -51.93 -0.35 1.30 16 49 H 0.40 4.16 9.06 45.56 0.41 4.57 16 LS Contribution 383.47 15.07 5.78 5.78 Total: -1.00 -32.57 383.47 -9.06 -41.63 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.59 Total: 4.72 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -2.53 Total: 6.70 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -0.54 Total: -57.83 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.15 Total: -17.67 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.57 -9.06 -41.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036786048.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.330 kcal (2) G-P(sol) polarization free energy of solvation -32.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.69 seconds