Wall clock time and date at job start Wed Apr 1 2020 03:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38354 * 119.40940 * 2 1 4 4 C 1.38333 * 119.45810 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.82598 * 179.97438 * 4 3 2 6 6 C 1.39991 * 118.35115 * 359.97438 * 4 3 2 7 7 C 1.47521 * 120.59639 * 179.97438 * 6 4 3 8 8 O 1.21593 * 119.99875 * 89.99961 * 7 6 4 9 9 N 1.34773 * 120.00175 * 270.27132 * 7 6 4 10 10 C 1.47149 * 121.00980 * 359.45247 * 9 7 6 11 11 C 1.52275 * 107.60683 * 122.90905 * 10 9 7 12 12 C 1.51143 * 111.74326 * 53.98359 * 11 10 9 13 13 H 1.09005 * 108.46140 * 185.28297 * 12 11 10 14 14 C 1.53994 * 113.17312 * 305.53913 * 12 11 10 15 15 H 1.09000 * 112.71968 * 284.11760 * 14 12 11 16 16 C 1.56018 * 100.38735 * 162.97463 * 14 12 11 17 17 C 1.54497 * 102.61892 * 323.13431 * 16 14 12 18 18 N 1.46464 * 112.67753 * 65.34362 * 12 11 10 19 19 C 1.36937 * 126.05641 * 29.82328 * 18 12 11 20 20 H 1.08000 * 119.99766 * 359.97438 * 19 18 12 21 21 C 1.38813 * 120.00084 * 179.97438 * 19 18 12 22 22 N 1.31614 * 120.00111 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00090 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47072 * 89.99705 * 23 21 19 25 25 H 1.48500 * 109.47409 * 210.00150 * 23 21 19 26 26 H 1.48502 * 109.47069 * 330.00410 * 23 21 19 27 27 C 1.46521 * 121.01435 * 179.72315 * 9 7 6 28 28 C 1.40274 * 118.80374 * 0.25207 * 6 4 3 29 29 O 1.35425 * 119.79946 * 179.73049 * 28 6 4 30 30 N 1.31878 * 119.40507 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47069 * 90.00365 * 1 2 3 32 32 H 1.08996 * 109.47121 * 210.00546 * 1 2 3 33 33 H 1.09004 * 109.47120 * 330.00332 * 1 2 3 34 34 H 1.08001 * 120.27134 * 359.97438 * 3 2 1 35 35 H 1.09005 * 109.47354 * 270.02742 * 5 4 3 36 36 H 1.09008 * 109.46938 * 30.02219 * 5 4 3 37 37 H 1.08997 * 109.47549 * 150.02184 * 5 4 3 38 38 H 1.08996 * 109.81705 * 242.10100 * 10 9 7 39 39 H 1.09001 * 109.81581 * 3.00841 * 10 9 7 40 40 H 1.09001 * 108.28780 * 293.73770 * 11 10 9 41 41 H 1.08997 * 109.31960 * 174.92616 * 11 10 9 42 42 H 1.09004 * 110.78063 * 81.41376 * 16 14 12 43 43 H 1.08993 * 110.77820 * 204.84971 * 16 14 12 44 44 H 1.09010 * 109.90017 * 263.45714 * 17 16 14 45 45 H 1.08996 * 110.05480 * 142.29703 * 17 16 14 46 46 H 0.97001 * 120.00246 * 180.02562 * 22 21 19 47 47 H 1.08997 * 109.34568 * 355.83090 * 27 9 7 48 48 H 1.09001 * 109.34617 * 115.36896 * 27 9 7 49 49 H 0.96692 * 114.00804 * 89.99824 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5697 1.2064 -0.0005 5 6 4.3409 2.5012 -0.0011 6 6 4.2356 -0.0250 -0.0005 7 6 5.7097 -0.0816 -0.0016 8 8 6.3180 -0.1044 1.0509 9 7 6.3824 -0.1024 -1.1693 10 6 5.6686 -0.0816 -2.4559 11 6 6.1710 1.1220 -3.2419 12 6 7.6768 1.1174 -3.3712 13 1 7.9844 2.0435 -3.8570 14 6 8.4011 1.0172 -2.0160 15 1 8.3915 1.9565 -1.4630 16 6 9.8243 0.5867 -2.4887 17 6 9.5156 -0.3570 -3.6725 18 7 8.1717 -0.0075 -4.1681 19 6 7.5044 -0.6253 -5.1918 20 1 6.5183 -0.2879 -5.4749 21 6 8.0953 -1.6853 -5.8657 22 7 9.2969 -2.0968 -5.5205 23 14 7.1847 -2.5286 -7.2618 24 1 7.5116 -1.8550 -8.5443 25 1 7.5965 -3.9536 -7.3321 26 1 5.7219 -2.4474 -7.0190 27 6 7.8465 -0.1523 -1.1963 28 6 3.4758 -1.2041 -0.0054 29 8 4.0991 -2.4064 -0.0110 30 7 2.1545 -1.1489 -0.0005 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6412 2.1375 -0.0004 35 1 4.5260 2.8134 -1.0290 36 1 3.7625 3.2688 0.5131 37 1 5.2918 2.3581 0.5120 38 1 5.8814 -0.9949 -3.0114 39 1 4.5960 0.0046 -2.2820 40 1 5.8598 2.0262 -2.7188 41 1 5.7265 1.1138 -4.2371 42 1 10.3987 1.4508 -2.8226 43 1 10.3502 0.0540 -1.6965 44 1 9.5283 -1.3931 -3.3341 45 1 10.2513 -0.2163 -4.4643 46 1 9.7100 -2.8372 -5.9916 47 1 8.2287 -0.0925 -0.1773 48 1 8.1675 -1.0923 -1.6452 49 1 4.2806 -2.7596 0.8707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036786048.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:13 Heat of formation + Delta-G solvation = -34.144013 kcal Electronic energy + Delta-G solvation = -32278.967676 eV Core-core repulsion = 28205.951779 eV Total energy + Delta-G solvation = -4073.015897 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.24748 -41.05100 -39.57004 -38.45888 -36.56020 -35.28486 -34.55849 -33.25722 -32.81226 -31.17526 -29.80049 -28.97516 -28.42313 -26.89506 -25.74471 -24.25212 -24.02792 -22.67901 -21.83853 -21.19002 -19.88945 -19.54944 -18.70678 -18.35206 -18.05726 -17.46777 -16.88873 -16.66118 -16.35475 -15.85891 -15.71226 -15.57323 -15.26556 -14.90572 -14.57698 -14.43278 -14.22873 -13.99114 -13.94249 -13.91030 -13.85125 -13.23794 -13.20893 -13.15130 -12.96624 -12.86244 -12.84307 -12.67094 -12.62782 -12.58079 -12.26434 -12.01112 -11.70385 -11.54071 -11.52174 -11.28847 -11.22843 -10.64976 -10.60372 -10.45135 -9.83337 -9.69468 -8.80380 -7.80136 -5.12443 -0.29062 0.04297 1.35430 1.45284 1.46368 1.53657 1.90038 2.30486 2.51146 2.61750 3.23068 3.39464 3.53208 3.56994 3.59295 3.77466 3.88918 3.98022 4.04030 4.13025 4.19455 4.23019 4.29232 4.42276 4.50977 4.54255 4.55722 4.60564 4.68178 4.75988 4.79049 4.82651 4.83989 4.94307 4.97214 5.01722 5.08015 5.14346 5.19902 5.21624 5.25318 5.37625 5.45775 5.53379 5.56824 5.69992 5.81557 6.24390 6.32355 6.39517 6.80774 6.95170 7.14842 7.84509 8.50674 9.31259 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012177 B = 0.003958 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.853091 B = 7072.454628 C = 8123.070144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.158 3.842 3 C -0.173 4.173 4 C 0.007 3.993 5 C -0.122 4.122 6 C -0.215 4.215 7 C 0.581 3.419 8 O -0.577 6.577 9 N -0.584 5.584 10 C 0.132 3.868 11 C -0.121 4.121 12 C 0.163 3.837 13 H 0.025 0.975 14 C -0.099 4.099 15 H 0.113 0.887 16 C -0.128 4.128 17 C 0.184 3.816 18 N -0.610 5.610 19 C -0.217 4.217 20 H 0.087 0.913 21 C -0.066 4.066 22 N -0.952 5.952 23 Si 0.963 3.037 24 H -0.287 1.287 25 H -0.303 1.303 26 H -0.270 1.270 27 C 0.131 3.869 28 C 0.334 3.666 29 O -0.494 6.494 30 N -0.531 5.531 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.187 0.813 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.007 0.993 45 H 0.005 0.995 46 H 0.242 0.758 47 H 0.085 0.915 48 H 0.045 0.955 49 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.719 12.088 13.303 23.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.020 3.980 3 C -0.192 4.192 4 C -0.001 4.001 5 C -0.178 4.178 6 C -0.221 4.221 7 C 0.369 3.631 8 O -0.458 6.458 9 N -0.314 5.314 10 C 0.009 3.991 11 C -0.159 4.159 12 C 0.057 3.943 13 H 0.043 0.957 14 C -0.119 4.119 15 H 0.131 0.869 16 C -0.166 4.166 17 C 0.059 3.941 18 N -0.335 5.335 19 C -0.346 4.346 20 H 0.105 0.895 21 C -0.259 4.259 22 N -0.602 5.602 23 Si 0.793 3.207 24 H -0.215 1.215 25 H -0.230 1.230 26 H -0.195 1.195 27 C 0.008 3.992 28 C 0.156 3.844 29 O -0.304 6.304 30 N -0.252 5.252 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.129 0.871 34 H 0.205 0.795 35 H 0.114 0.886 36 H 0.130 0.870 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.026 0.974 45 H 0.024 0.976 46 H 0.051 0.949 47 H 0.103 0.897 48 H 0.064 0.936 49 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -15.804 11.143 13.095 23.354 hybrid contribution 0.916 -1.013 -0.748 1.557 sum -14.888 10.130 12.347 21.834 Atomic orbital electron populations 1.20928 0.85468 1.05119 1.04563 1.21921 0.98725 0.86777 0.90551 1.22189 0.92752 1.00848 1.03457 1.20604 0.94724 0.93826 0.90918 1.21019 0.99645 0.92700 1.04450 1.20779 0.93618 0.95433 1.12293 1.18045 0.86911 0.75109 0.83033 1.90740 1.70220 1.52942 1.31856 1.48009 1.07221 1.70245 1.05892 1.21371 0.95473 0.99512 0.82739 1.21418 0.96306 0.97836 1.00383 1.20507 0.92892 0.90591 0.90329 0.95703 1.22721 0.95485 0.98146 0.95554 0.86926 1.22997 0.96054 0.99760 0.97831 1.20974 0.86140 0.94731 0.92230 1.44559 1.15716 1.36457 1.36772 1.19299 0.99053 1.09664 1.06612 0.89527 1.25475 0.97711 1.00337 1.02391 1.70164 1.16014 1.29881 1.44104 0.85294 0.78384 0.77182 0.79859 1.21459 1.22966 1.19452 1.21442 0.78649 0.98467 1.00604 1.19163 0.86931 0.84441 0.93909 1.84691 1.76957 1.33190 1.35513 1.67104 1.08639 1.32252 1.17158 0.88849 0.90710 0.87066 0.79548 0.88551 0.87029 0.92575 0.93310 0.90062 0.89319 0.91085 0.90352 0.90404 0.97432 0.97632 0.94885 0.89698 0.93616 0.72299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.16 71.24 0.72 -0.39 16 2 C 0.16 2.99 6.78 42.58 0.29 3.28 16 3 C -0.17 -2.69 9.41 22.32 0.21 -2.48 16 4 C 0.01 0.15 5.89 -19.42 -0.11 0.03 16 5 C -0.12 -1.94 9.69 71.24 0.69 -1.25 16 6 C -0.21 -6.09 3.66 -19.91 -0.07 -6.16 16 7 C 0.58 19.38 5.31 86.69 0.46 19.84 16 8 O -0.58 -22.12 16.53 -4.01 -0.07 -22.18 16 9 N -0.58 -19.91 2.93 -824.88 -2.42 -22.33 16 10 C 0.13 4.50 6.26 86.02 0.54 5.04 16 11 C -0.12 -3.82 5.09 29.75 0.15 -3.66 16 12 C 0.16 6.03 2.90 44.73 0.13 6.16 16 13 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 14 C -0.10 -3.21 3.87 -9.34 -0.04 -3.25 16 15 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 16 C -0.13 -4.50 6.29 32.15 0.20 -4.30 16 17 C 0.18 8.87 4.64 86.71 0.40 9.28 16 18 N -0.61 -29.21 3.12 -674.33 -2.10 -31.32 16 19 C -0.22 -11.49 9.00 84.03 0.76 -10.73 16 20 H 0.09 4.33 6.66 -2.91 -0.02 4.31 16 21 C -0.07 -3.73 5.49 84.86 0.47 -3.26 16 22 N -0.95 -57.23 10.38 21.65 0.22 -57.01 16 23 Si 0.96 45.89 29.55 68.60 2.03 47.92 16 24 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 25 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 27 C 0.13 4.67 5.45 86.44 0.47 5.14 16 28 C 0.33 9.93 7.76 85.13 0.66 10.59 16 29 O -0.49 -15.17 13.01 -87.21 -1.13 -16.31 16 30 N -0.53 -14.23 10.28 -296.06 -3.04 -17.27 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.11 0.48 8.07 -2.39 -0.02 0.46 16 34 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 35 H 0.10 1.36 7.74 -2.38 -0.02 1.34 16 36 H 0.11 1.04 8.10 -2.38 -0.02 1.02 16 37 H 0.06 1.16 7.19 -2.39 -0.02 1.15 16 38 H 0.05 2.09 7.48 -2.39 -0.02 2.07 16 39 H 0.08 2.53 6.32 -2.39 -0.02 2.51 16 40 H 0.09 2.18 7.74 -2.39 -0.02 2.16 16 41 H 0.07 2.35 6.97 -2.39 -0.02 2.33 16 42 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 43 H 0.08 2.51 7.97 -2.39 -0.02 2.49 16 44 H 0.01 0.41 6.99 -2.38 -0.02 0.40 16 45 H 0.01 0.30 7.56 -2.39 -0.02 0.28 16 46 H 0.24 14.39 8.31 -92.71 -0.77 13.62 16 47 H 0.08 2.96 6.99 -2.39 -0.02 2.94 16 48 H 0.05 1.96 6.80 -2.39 -0.02 1.94 16 49 H 0.42 9.24 9.06 -74.06 -0.67 8.57 16 Total: -1.00 -75.82 383.47 -0.27 -76.09 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.31 Total: 18.51 kcal Atomic # 6 Polarization: 17.96 SS G_CDS: 5.93 Total: 23.89 kcal Atomic # 7 Polarization: -120.58 SS G_CDS: -7.34 Total: -127.92 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -1.20 Total: -38.49 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -75.82 -0.27 -76.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036786048.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.951 kcal (2) G-P(sol) polarization free energy of solvation -75.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds