Wall clock time and date at job start Wed Apr 1 2020 03:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38350 * 119.40760 * 2 1 4 4 C 1.38342 * 119.46025 * 179.70045 * 3 2 1 5 5 C 1.50690 * 120.82853 * 180.26063 * 4 3 2 6 6 C 1.39988 * 118.34695 * 0.28205 * 4 3 2 7 7 C 1.47523 * 120.59761 * 180.02562 * 6 4 3 8 8 O 1.21591 * 119.99923 * 90.00393 * 7 6 4 9 9 N 1.34774 * 119.99956 * 269.99728 * 7 6 4 10 10 C 1.44217 * 115.76458 * 359.75093 * 9 7 6 11 11 C 1.51797 * 112.78198 * 185.97971 * 10 9 7 12 12 C 1.50981 * 112.00570 * 324.62893 * 11 10 9 13 13 H 1.09006 * 108.32266 * 180.08113 * 12 11 10 14 14 C 1.53977 * 111.97876 * 59.88826 * 12 11 10 15 15 H 1.09001 * 112.96920 * 75.44021 * 14 12 11 16 16 C 1.56264 * 99.76249 * 195.21751 * 14 12 11 17 17 C 1.54649 * 102.20349 * 38.87235 * 16 14 12 18 18 N 1.46665 * 113.21332 * 301.07022 * 12 11 10 19 19 C 1.36934 * 126.19821 * 330.15099 * 18 12 11 20 20 H 1.07998 * 119.99830 * 359.97438 * 19 18 12 21 21 C 1.38813 * 119.99725 * 179.97438 * 19 18 12 22 22 N 1.31616 * 120.00130 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99913 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46905 * 90.00155 * 23 21 19 25 25 H 1.48500 * 109.46990 * 210.00855 * 23 21 19 26 26 H 1.48504 * 109.47037 * 330.00375 * 23 21 19 27 27 C 1.43530 * 115.76263 * 180.02562 * 9 7 6 28 28 C 1.40290 * 118.80662 * 359.97438 * 6 4 3 29 29 O 1.35424 * 119.80032 * 179.97438 * 28 6 4 30 30 N 1.31884 * 119.40696 * 180.25693 * 2 1 3 31 31 H 1.09005 * 109.47030 * 89.99837 * 1 2 3 32 32 H 1.09001 * 109.46949 * 209.99489 * 1 2 3 33 33 H 1.08997 * 109.46827 * 329.99586 * 1 2 3 34 34 H 1.08002 * 120.27375 * 359.97438 * 3 2 1 35 35 H 1.09004 * 109.47431 * 89.99754 * 5 4 3 36 36 H 1.09002 * 109.47273 * 210.00123 * 5 4 3 37 37 H 1.09004 * 109.47056 * 329.99903 * 5 4 3 38 38 H 1.08999 * 108.82652 * 307.04869 * 10 9 7 39 39 H 1.09009 * 108.82470 * 65.35835 * 10 9 7 40 40 H 1.09005 * 109.09446 * 203.86771 * 11 10 9 41 41 H 1.09000 * 108.78398 * 85.17966 * 11 10 9 42 42 H 1.09000 * 110.85993 * 157.05067 * 16 14 12 43 43 H 1.08996 * 110.85486 * 280.70000 * 16 14 12 44 44 H 1.09001 * 109.96605 * 95.29073 * 17 16 14 45 45 H 1.08991 * 109.97307 * 216.54809 * 17 16 14 46 46 H 0.97000 * 120.00129 * 179.97438 * 22 21 19 47 47 H 1.09006 * 108.16557 * 302.27439 * 27 9 7 48 48 H 1.09000 * 108.16405 * 58.85947 * 27 9 7 49 49 H 0.96703 * 113.99888 * 90.00697 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2052 0.0000 4 6 3.5697 1.2065 0.0063 5 6 4.3408 2.5012 0.0124 6 6 4.2355 -0.0249 0.0064 7 6 5.7097 -0.0815 0.0136 8 8 6.3119 -0.1075 1.0695 9 7 6.3888 -0.1044 -1.1503 10 6 5.5837 -0.0759 -2.3465 11 6 6.4044 -0.2495 -3.6117 12 6 7.7584 0.4095 -3.5026 13 1 8.2935 0.2501 -4.4388 14 6 8.5908 -0.1720 -2.3450 15 1 9.0041 -1.1551 -2.5703 16 6 9.6919 0.9308 -2.2304 17 6 8.8822 2.2271 -2.4659 18 7 7.6806 1.8498 -3.2368 19 6 6.6757 2.6919 -3.6319 20 1 5.8389 2.3069 -4.1957 21 6 6.7328 4.0405 -3.3079 22 7 7.7529 4.5098 -2.6212 23 14 5.3617 5.1893 -3.8463 24 1 4.3136 5.2358 -2.7953 25 1 5.9121 6.5523 -4.0574 26 1 4.7693 4.6929 -5.1144 27 6 7.8186 -0.1601 -1.0374 28 6 3.4757 -1.2042 0.0007 29 8 4.0991 -2.4064 0.0002 30 7 2.1546 -1.1489 -0.0052 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6411 2.1375 -0.0004 35 1 4.5220 2.8114 1.0415 36 1 5.2937 2.3590 -0.4974 37 1 3.7643 3.2698 -0.5026 38 1 4.8436 -0.8742 -2.2915 39 1 5.0632 0.8805 -2.3975 40 1 5.8633 0.1882 -4.4506 41 1 6.5422 -1.3147 -3.7972 42 1 10.1413 0.9289 -1.2373 43 1 10.4515 0.8023 -3.0015 44 1 8.5898 2.6621 -1.5102 45 1 9.4792 2.9412 -3.0330 46 1 7.7929 5.4522 -2.3951 47 1 8.1474 0.7018 -0.4567 48 1 8.0805 -1.0590 -0.4793 49 1 4.2767 -2.7578 0.8835 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036786049.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:21 Heat of formation + Delta-G solvation = -28.782646 kcal Electronic energy + Delta-G solvation = -32985.213121 eV Core-core repulsion = 28912.429710 eV Total energy + Delta-G solvation = -4072.783411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -42.41884 -41.15154 -39.59804 -38.43294 -36.63639 -35.37179 -34.61462 -33.46664 -32.81655 -31.31775 -29.93666 -29.08420 -28.44583 -26.85137 -25.61982 -24.29092 -24.19439 -22.76427 -21.85802 -21.17490 -19.54048 -19.49318 -18.71413 -18.36798 -18.17657 -17.38056 -17.16295 -16.68418 -16.53186 -16.02896 -15.77789 -15.39489 -15.18557 -15.06770 -14.66881 -14.46706 -14.29711 -14.15641 -13.99867 -13.98234 -13.77912 -13.29252 -13.21861 -13.09820 -13.01726 -12.93778 -12.84665 -12.74157 -12.64555 -12.42603 -12.33095 -12.02778 -11.59714 -11.55430 -11.45158 -11.31324 -11.20798 -10.66392 -10.62804 -10.49535 -9.85508 -9.55634 -8.80133 -7.76803 -5.09186 -0.30350 -0.00897 1.35503 1.44220 1.46736 1.53948 2.00445 2.27072 2.52231 2.60597 3.24799 3.41449 3.48670 3.52348 3.52862 3.76403 3.84109 3.95312 3.99768 4.09366 4.13336 4.15244 4.24078 4.43598 4.46907 4.48744 4.53722 4.54827 4.57758 4.75543 4.79039 4.82630 4.84392 4.93245 4.98110 5.00656 5.01662 5.11817 5.15031 5.16441 5.26401 5.36708 5.49106 5.55912 5.67741 5.71885 5.80774 6.22611 6.25101 6.40745 6.75912 7.00813 7.15722 7.85452 8.53349 9.34700 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010520 B = 0.005347 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.923396 B = 5235.529898 C = 6817.563349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.165 3.835 3 C -0.179 4.179 4 C 0.006 3.994 5 C -0.118 4.118 6 C -0.212 4.212 7 C 0.563 3.437 8 O -0.577 6.577 9 N -0.561 5.561 10 C 0.139 3.861 11 C -0.119 4.119 12 C 0.161 3.839 13 H 0.035 0.965 14 C -0.098 4.098 15 H 0.126 0.874 16 C -0.130 4.130 17 C 0.187 3.813 18 N -0.605 5.605 19 C -0.210 4.210 20 H 0.083 0.917 21 C -0.062 4.062 22 N -0.950 5.950 23 Si 0.954 3.046 24 H -0.281 1.281 25 H -0.304 1.304 26 H -0.270 1.270 27 C 0.146 3.854 28 C 0.347 3.653 29 O -0.483 6.483 30 N -0.519 5.519 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.174 0.826 35 H 0.085 0.915 36 H 0.046 0.954 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.045 0.955 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.003 0.997 45 H 0.005 0.995 46 H 0.241 0.759 47 H 0.034 0.966 48 H 0.064 0.936 49 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.628 -11.519 3.632 16.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.027 3.973 3 C -0.198 4.198 4 C -0.002 4.002 5 C -0.174 4.174 6 C -0.219 4.219 7 C 0.350 3.650 8 O -0.458 6.458 9 N -0.289 5.289 10 C 0.016 3.984 11 C -0.158 4.158 12 C 0.055 3.945 13 H 0.052 0.948 14 C -0.117 4.117 15 H 0.144 0.856 16 C -0.168 4.168 17 C 0.062 3.938 18 N -0.330 5.330 19 C -0.339 4.339 20 H 0.100 0.900 21 C -0.254 4.254 22 N -0.600 5.600 23 Si 0.783 3.217 24 H -0.208 1.208 25 H -0.231 1.231 26 H -0.195 1.195 27 C 0.023 3.977 28 C 0.168 3.832 29 O -0.293 6.293 30 N -0.240 5.240 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.123 0.877 34 H 0.192 0.808 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.021 0.979 45 H 0.023 0.977 46 H 0.050 0.950 47 H 0.052 0.948 48 H 0.082 0.918 49 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -10.743 -12.080 3.477 16.535 hybrid contribution 0.482 1.984 0.320 2.067 sum -10.261 -10.095 3.797 14.887 Atomic orbital electron populations 1.20920 0.85030 1.05196 1.04728 1.21836 0.98765 0.86306 0.90372 1.22114 0.92435 1.01210 1.04069 1.20404 0.94885 0.93457 0.91460 1.20832 0.99620 0.93883 1.03081 1.20784 0.93922 0.95189 1.11986 1.18233 0.87176 0.75813 0.83801 1.90721 1.70745 1.52311 1.32049 1.46304 1.06483 1.69899 1.06199 1.20563 0.92835 1.00354 0.84678 1.21206 0.96594 1.01726 0.96254 1.20470 0.94447 0.84087 0.95545 0.94773 1.22499 0.95889 0.99858 0.93483 0.85648 1.23209 0.97038 0.94660 1.01924 1.20989 0.86711 0.92564 0.93506 1.44571 1.22085 1.02974 1.63415 1.19184 0.98964 0.88757 1.26975 0.89959 1.25395 0.99951 0.98394 1.01695 1.70170 1.31896 1.12684 1.45294 0.85432 0.79414 0.78428 0.78391 1.20782 1.23137 1.19514 1.20326 0.78994 1.00520 0.97880 1.18932 0.86686 0.84143 0.93451 1.84624 1.76819 1.32254 1.35615 1.67140 1.08409 1.31412 1.17026 0.88605 0.89870 0.87692 0.80809 0.89688 0.93491 0.89183 0.91804 0.93694 0.90760 0.88971 0.90757 0.90087 0.97863 0.97705 0.95001 0.94803 0.91798 0.72000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 10.16 71.24 0.72 -0.62 16 2 C 0.16 3.71 6.78 42.58 0.29 4.00 16 3 C -0.18 -4.21 9.41 22.32 0.21 -4.00 16 4 C 0.01 0.18 5.78 -19.42 -0.11 0.07 16 5 C -0.12 -4.01 9.69 71.23 0.69 -3.32 16 6 C -0.21 -7.11 3.89 -19.91 -0.08 -7.19 16 7 C 0.56 21.65 5.12 86.69 0.44 22.09 16 8 O -0.58 -25.28 16.68 -4.00 -0.07 -25.35 16 9 N -0.56 -20.78 3.19 -843.07 -2.69 -23.47 16 10 C 0.14 4.82 4.81 86.41 0.42 5.23 16 11 C -0.12 -3.83 5.08 29.54 0.15 -3.68 16 12 C 0.16 5.92 2.93 44.63 0.13 6.05 16 13 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 14 C -0.10 -3.14 3.80 -9.70 -0.04 -3.18 16 15 H 0.13 3.08 8.14 -2.39 -0.02 3.06 16 16 C -0.13 -4.58 6.14 32.29 0.20 -4.38 16 17 C 0.19 9.01 4.82 86.72 0.42 9.43 16 18 N -0.61 -28.52 3.05 -673.32 -2.05 -30.57 16 19 C -0.21 -10.78 8.86 84.03 0.74 -10.03 16 20 H 0.08 4.04 6.89 -2.91 -0.02 4.02 16 21 C -0.06 -3.35 5.49 84.86 0.47 -2.88 16 22 N -0.95 -55.94 10.41 21.65 0.23 -55.71 16 23 Si 0.95 43.87 29.55 68.60 2.03 45.89 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 C 0.15 5.28 4.61 86.56 0.40 5.68 16 28 C 0.35 10.44 7.22 85.13 0.61 11.06 16 29 O -0.48 -13.09 13.01 -87.19 -1.13 -14.22 16 30 N -0.52 -14.28 10.28 -296.06 -3.04 -17.33 16 31 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.10 0.87 8.07 -2.39 -0.02 0.85 16 34 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 35 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.05 2.02 7.19 -2.39 -0.02 2.00 16 37 H 0.09 2.78 8.10 -2.38 -0.02 2.76 16 38 H 0.06 2.08 7.10 -2.39 -0.02 2.06 16 39 H 0.04 1.79 7.22 -2.38 -0.02 1.78 16 40 H 0.07 2.43 7.36 -2.38 -0.02 2.41 16 41 H 0.09 2.38 8.14 -2.39 -0.02 2.37 16 42 H 0.07 2.45 7.81 -2.39 -0.02 2.43 16 43 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.00 0.17 7.13 -2.39 -0.02 0.16 16 45 H 0.00 0.26 7.58 -2.39 -0.02 0.24 16 46 H 0.24 14.07 8.31 -92.71 -0.77 13.30 16 47 H 0.03 1.46 6.57 -2.38 -0.02 1.44 16 48 H 0.06 2.14 8.04 -2.39 -0.02 2.12 16 49 H 0.42 7.86 9.06 -74.06 -0.67 7.19 16 Total: -1.00 -72.62 383.58 -0.76 -73.38 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.30 Total: 23.06 kcal Atomic # 6 Polarization: 18.65 SS G_CDS: 5.67 Total: 24.31 kcal Atomic # 7 Polarization: -119.52 SS G_CDS: -7.56 Total: -127.08 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -1.20 Total: -39.57 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -72.62 -0.76 -73.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036786049.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.596 kcal (2) G-P(sol) polarization free energy of solvation -72.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds