Wall clock time and date at job start Wed Apr 1 2020 05:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40202 * 120.36764 * 2 1 4 4 C 1.35347 * 119.94819 * 179.97438 * 3 2 1 5 5 N 1.35762 * 120.70162 * 359.97373 * 4 3 2 6 6 C 1.46506 * 119.62262 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47297 * 89.99928 * 6 5 4 8 8 O 1.21283 * 120.00192 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00134 * 179.97438 * 7 6 5 10 10 C 1.46818 * 120.30016 * 359.97438 * 9 7 6 11 11 C 1.52969 * 107.39097 * 235.03848 * 10 9 7 12 12 C 1.53556 * 109.95484 * 298.40858 * 11 10 9 13 13 H 1.08993 * 110.97744 * 289.23706 * 12 11 10 14 14 C 1.51775 * 112.12039 * 53.07605 * 12 11 10 15 15 H 1.09002 * 104.98442 * 206.69905 * 14 12 11 16 16 C 1.53378 * 105.83820 * 95.17794 * 14 12 11 17 17 C 1.54470 * 102.54150 * 29.49096 * 16 14 12 18 18 N 1.46869 * 106.65222 * 332.25927 * 17 16 14 19 19 C 1.36937 * 125.33653 * 195.40191 * 18 17 16 20 20 H 1.07998 * 119.99929 * 170.65136 * 19 18 17 21 21 C 1.38809 * 120.00203 * 350.66017 * 19 18 17 22 22 N 1.31623 * 119.99845 * 351.05033 * 21 19 18 23 23 Si 1.86796 * 120.00365 * 171.05159 * 21 19 18 24 24 H 1.48495 * 109.47358 * 94.73435 * 23 21 19 25 25 H 1.48506 * 109.47418 * 214.73639 * 23 21 19 26 26 H 1.48506 * 109.46851 * 334.73371 * 23 21 19 27 27 C 1.45649 * 120.30355 * 180.02562 * 9 7 6 28 28 C 1.34659 * 120.75455 * 0.29880 * 5 4 3 29 29 O 1.22057 * 119.98753 * 179.70659 * 28 5 4 30 30 C 1.36401 * 120.36747 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46453 * 90.00263 * 1 2 3 32 32 H 1.08995 * 109.47036 * 210.00099 * 1 2 3 33 33 H 1.08998 * 109.47187 * 330.00881 * 1 2 3 34 34 H 1.07997 * 120.02188 * 359.95113 * 3 2 1 35 35 H 1.08001 * 119.64841 * 179.97438 * 4 3 2 36 36 H 1.09003 * 109.47103 * 329.99658 * 6 5 4 37 37 H 1.09001 * 109.46892 * 210.00220 * 6 5 4 38 38 H 1.08998 * 109.87553 * 354.50877 * 10 9 7 39 39 H 1.08997 * 109.87242 * 115.49824 * 10 9 7 40 40 H 1.08999 * 109.38609 * 58.68267 * 11 10 9 41 41 H 1.09001 * 109.38591 * 178.36663 * 11 10 9 42 42 H 1.08999 * 110.79388 * 271.23004 * 16 14 12 43 43 H 1.08999 * 110.96437 * 147.82436 * 16 14 12 44 44 H 1.08998 * 110.02533 * 212.96153 * 17 16 14 45 45 H 1.08993 * 110.06482 * 91.58037 * 17 16 14 46 46 H 0.96997 * 119.99812 * 180.02562 * 22 21 19 47 47 H 1.09001 * 108.44500 * 22.15359 * 27 9 7 48 48 H 1.09004 * 108.30806 * 264.75311 * 27 9 7 49 49 H 1.07995 * 120.34518 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2097 0.0000 4 6 3.5692 1.1998 0.0005 5 7 4.2538 0.0274 0.0016 6 6 5.7188 0.0442 0.0027 7 6 6.2200 0.0507 1.4238 8 8 5.4313 0.0416 2.3451 9 7 7.5448 0.0655 1.6711 10 6 8.5055 0.0749 0.5609 11 6 9.4504 -1.1109 0.7638 12 6 10.2147 -0.9516 2.0861 13 1 10.9456 -0.1458 2.0196 14 6 9.2822 -0.7209 3.2611 15 1 9.8752 -0.1639 3.9865 16 6 9.0496 -2.1012 3.8882 17 6 10.3660 -2.8423 3.5657 18 7 10.8966 -2.2415 2.3351 19 6 11.8735 -2.7863 1.5451 20 1 12.0946 -2.3505 0.5819 21 6 12.5793 -3.8988 1.9820 22 7 12.4374 -4.3239 3.2196 23 14 13.7307 -4.7926 0.8138 24 1 15.1128 -4.2795 0.9917 25 1 13.7015 -6.2481 1.1070 26 1 13.2930 -4.5608 -0.5863 27 6 8.0365 0.0713 3.0421 28 6 3.6017 -1.1508 -0.0039 29 8 4.2313 -2.1965 -0.0083 30 6 2.1966 -1.1769 0.0005 31 1 -0.3632 0.0000 -1.0277 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5137 34 1 1.6822 2.1486 -0.0008 35 1 4.1103 2.1344 0.0001 36 1 6.0722 0.9381 -0.5113 37 1 6.0927 -0.8417 -0.5105 38 1 7.9776 -0.0300 -0.3869 39 1 9.0714 1.0064 0.5685 40 1 8.8720 -2.0345 0.7870 41 1 10.1618 -1.1519 -0.0610 42 1 8.2003 -2.6002 3.4213 43 1 8.9048 -2.0208 4.9655 44 1 10.1685 -3.9026 3.4083 45 1 11.0775 -2.7126 4.3811 46 1 12.9310 -5.1010 3.5250 47 1 7.2559 -0.3272 3.6901 48 1 8.2297 1.1041 3.3322 49 1 1.6683 -2.1188 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036831351.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:43 Heat of formation + Delta-G solvation = 0.892352 kcal Electronic energy + Delta-G solvation = -30984.878111 eV Core-core repulsion = 26913.381504 eV Total energy + Delta-G solvation = -4071.496606 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.67384 -40.13227 -38.26686 -37.14117 -35.56814 -35.35369 -32.92286 -31.65714 -30.89595 -29.92766 -29.36552 -28.33991 -27.02594 -25.07832 -23.89785 -23.50610 -22.75610 -21.83031 -20.31121 -20.07575 -18.11600 -17.75461 -17.69301 -17.39615 -16.87244 -16.19561 -15.86036 -15.46915 -15.11608 -14.82052 -14.72773 -14.41602 -14.22567 -13.86462 -13.79605 -13.54044 -13.47387 -13.01957 -12.92619 -12.66567 -12.55273 -12.33941 -12.19542 -11.95338 -11.85134 -11.76429 -11.57567 -11.40469 -11.05303 -10.80287 -10.75436 -10.35125 -10.14702 -10.07284 -10.03700 -9.86202 -9.70936 -9.64695 -9.45942 -8.65808 -8.48445 -8.12593 -6.81585 -5.73551 -3.07459 0.63829 1.72575 2.28158 2.48290 3.02586 3.38918 3.44700 3.46792 3.53378 4.24613 4.29835 4.36637 4.47530 4.50199 4.73296 4.86341 4.93085 4.99212 5.05836 5.13563 5.22167 5.22843 5.29809 5.31333 5.34097 5.50703 5.52417 5.55036 5.73276 5.82432 5.85647 5.87468 5.97255 6.01671 6.16142 6.20995 6.26623 6.31756 6.34867 6.55490 6.62139 6.70497 6.85714 6.90553 7.05346 7.36268 7.52746 7.63991 7.80651 7.94020 8.07029 8.25446 9.20027 9.81205 10.47698 11.38479 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019621 B = 0.002503 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.683458 B =11184.737426 C =11580.501665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.013 3.987 3 C -0.232 4.232 4 C 0.146 3.854 5 N -0.482 5.482 6 C 0.071 3.929 7 C 0.502 3.498 8 O -0.535 6.535 9 N -0.595 5.595 10 C 0.102 3.898 11 C -0.142 4.142 12 C 0.173 3.827 13 H 0.043 0.957 14 C -0.107 4.107 15 H 0.066 0.934 16 C -0.137 4.137 17 C 0.177 3.823 18 N -0.598 5.598 19 C -0.228 4.228 20 H 0.076 0.924 21 C -0.007 4.007 22 N -0.917 5.917 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.137 3.863 28 C 0.520 3.480 29 O -0.545 6.545 30 C -0.246 4.246 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.144 0.856 35 H 0.160 0.840 36 H 0.120 0.880 37 H 0.132 0.868 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.035 0.965 46 H 0.252 0.748 47 H 0.084 0.916 48 H 0.057 0.943 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.725 16.270 -7.669 26.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.009 3.991 3 C -0.255 4.255 4 C 0.019 3.981 5 N -0.193 5.193 6 C -0.054 4.054 7 C 0.288 3.712 8 O -0.412 6.412 9 N -0.328 5.328 10 C -0.021 4.021 11 C -0.182 4.182 12 C 0.066 3.934 13 H 0.060 0.940 14 C -0.127 4.127 15 H 0.085 0.915 16 C -0.175 4.175 17 C 0.052 3.948 18 N -0.322 5.322 19 C -0.357 4.357 20 H 0.094 0.906 21 C -0.204 4.204 22 N -0.563 5.563 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.206 1.206 27 C 0.014 3.986 28 C 0.322 3.678 29 O -0.427 6.427 30 C -0.268 4.268 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.162 0.838 35 H 0.177 0.823 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.063 0.937 47 H 0.102 0.898 48 H 0.075 0.925 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -19.512 15.369 -7.120 25.838 hybrid contribution 0.873 -0.473 -0.477 1.101 sum -18.639 14.896 -7.596 25.040 Atomic orbital electron populations 1.20916 0.90427 1.03537 1.02973 1.20187 0.96707 0.92676 0.89522 1.20484 0.92313 0.98850 1.13868 1.21862 0.93600 0.89478 0.93190 1.45091 1.07239 1.07298 1.59623 1.21867 0.79522 1.07247 0.96771 1.20546 0.82553 0.77080 0.90989 1.90725 1.54817 1.49864 1.45758 1.47733 1.04930 1.72020 1.08110 1.21922 0.91379 1.00522 0.88263 1.22527 0.98027 0.96836 1.00813 1.20522 0.91605 0.90285 0.91001 0.93968 1.20718 0.94971 0.97655 0.99334 0.91526 1.22664 1.00755 0.95135 0.98953 1.21107 0.88946 0.95995 0.88777 1.44699 1.42973 1.17369 1.27190 1.18955 1.10043 1.09264 0.97414 0.90614 1.24838 0.99489 0.99761 0.96280 1.69983 1.44978 1.26805 1.14577 0.86152 0.80571 0.79237 0.80071 1.21684 1.21665 1.20618 1.20363 0.96693 0.99365 0.82138 1.17114 0.89372 0.82490 0.78792 1.90998 1.69050 1.30185 1.52460 1.21928 0.92247 0.99571 1.13006 0.90187 0.90836 0.90824 0.83825 0.82295 0.86184 0.85052 0.90491 0.90823 0.91157 0.90955 0.92584 0.91973 0.92969 0.94653 0.93740 0.89765 0.92524 0.83585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.03 36.01 0.36 -0.32 16 2 C 0.01 0.11 5.89 -104.55 -0.62 -0.50 16 3 C -0.23 -1.74 9.71 -39.88 -0.39 -2.13 16 4 C 0.15 1.20 10.28 -16.84 -0.17 1.03 16 5 N -0.48 -5.68 2.07 -121.06 -0.25 -5.93 16 6 C 0.07 0.77 4.15 -5.19 -0.02 0.75 16 7 C 0.50 7.25 7.75 -10.99 -0.09 7.17 16 8 O -0.53 -9.67 15.88 5.55 0.09 -9.58 16 9 N -0.59 -8.27 3.00 -176.35 -0.53 -8.79 16 10 C 0.10 1.22 6.34 -3.88 -0.02 1.20 16 11 C -0.14 -2.37 5.19 -26.46 -0.14 -2.50 16 12 C 0.17 3.35 3.44 -67.43 -0.23 3.12 16 13 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 14 C -0.11 -1.85 2.45 -92.90 -0.23 -2.07 16 15 H 0.07 1.11 8.04 -51.93 -0.42 0.70 16 16 C -0.14 -2.67 6.36 -25.76 -0.16 -2.84 16 17 C 0.18 4.33 5.35 -3.07 -0.02 4.31 16 18 N -0.60 -14.79 3.04 -163.71 -0.50 -15.29 16 19 C -0.23 -6.18 9.80 -15.06 -0.15 -6.33 16 20 H 0.08 1.96 7.71 -52.49 -0.40 1.56 16 21 C -0.01 -0.19 5.42 -17.43 -0.09 -0.29 16 22 N -0.92 -27.03 10.58 55.49 0.59 -26.44 16 23 Si 0.91 22.02 29.56 -169.99 -5.03 17.00 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 C 0.14 2.05 5.95 -6.35 -0.04 2.01 16 28 C 0.52 7.78 7.40 -15.44 -0.11 7.67 16 29 O -0.55 -10.49 16.63 4.87 0.08 -10.41 16 30 C -0.25 -2.94 9.65 -39.38 -0.38 -3.32 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 33 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 34 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 35 H 0.16 0.72 8.04 -52.49 -0.42 0.30 16 36 H 0.12 0.72 7.78 -51.93 -0.40 0.32 16 37 H 0.13 1.55 6.94 -51.93 -0.36 1.19 16 38 H 0.08 0.70 5.90 -51.93 -0.31 0.40 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.07 1.21 7.98 -51.93 -0.41 0.79 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.05 1.44 7.36 -51.93 -0.38 1.05 16 45 H 0.04 0.95 7.68 -51.93 -0.40 0.55 16 46 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 47 H 0.08 1.39 6.80 -51.93 -0.35 1.04 16 48 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 389.08 15.07 5.86 5.86 Total: -1.00 -36.95 389.08 -9.82 -46.78 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.64 Total: -0.14 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -2.50 Total: 6.95 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.69 Total: -56.46 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: 0.17 Total: -19.99 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.95 -9.82 -46.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036831351.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.669 kcal (2) G-P(sol) polarization free energy of solvation -36.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds