Wall clock time and date at job start Wed Apr 1 2020 05:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40202 * 120.36764 * 2 1 4 4 C 1.35347 * 119.94819 * 179.97438 * 3 2 1 5 5 N 1.35762 * 120.70162 * 359.97373 * 4 3 2 6 6 C 1.46506 * 119.62262 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47297 * 89.99928 * 6 5 4 8 8 O 1.21283 * 120.00192 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00134 * 179.97438 * 7 6 5 10 10 C 1.46818 * 120.30016 * 359.97438 * 9 7 6 11 11 C 1.52969 * 107.39097 * 235.03848 * 10 9 7 12 12 C 1.53556 * 109.95484 * 298.40858 * 11 10 9 13 13 H 1.08993 * 110.97744 * 289.23706 * 12 11 10 14 14 C 1.51775 * 112.12039 * 53.07605 * 12 11 10 15 15 H 1.09002 * 104.98442 * 206.69905 * 14 12 11 16 16 C 1.53378 * 105.83820 * 95.17794 * 14 12 11 17 17 C 1.54470 * 102.54150 * 29.49096 * 16 14 12 18 18 N 1.46869 * 106.65222 * 332.25927 * 17 16 14 19 19 C 1.36937 * 125.33653 * 195.40191 * 18 17 16 20 20 H 1.07998 * 119.99929 * 170.65136 * 19 18 17 21 21 C 1.38809 * 120.00203 * 350.66017 * 19 18 17 22 22 N 1.31623 * 119.99845 * 351.05033 * 21 19 18 23 23 Si 1.86796 * 120.00365 * 171.05159 * 21 19 18 24 24 H 1.48495 * 109.47358 * 94.73435 * 23 21 19 25 25 H 1.48506 * 109.47418 * 214.73639 * 23 21 19 26 26 H 1.48506 * 109.46851 * 334.73371 * 23 21 19 27 27 C 1.45649 * 120.30355 * 180.02562 * 9 7 6 28 28 C 1.34659 * 120.75455 * 0.29880 * 5 4 3 29 29 O 1.22057 * 119.98753 * 179.70659 * 28 5 4 30 30 C 1.36401 * 120.36747 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46453 * 90.00263 * 1 2 3 32 32 H 1.08995 * 109.47036 * 210.00099 * 1 2 3 33 33 H 1.08998 * 109.47187 * 330.00881 * 1 2 3 34 34 H 1.07997 * 120.02188 * 359.95113 * 3 2 1 35 35 H 1.08001 * 119.64841 * 179.97438 * 4 3 2 36 36 H 1.09003 * 109.47103 * 329.99658 * 6 5 4 37 37 H 1.09001 * 109.46892 * 210.00220 * 6 5 4 38 38 H 1.08998 * 109.87553 * 354.50877 * 10 9 7 39 39 H 1.08997 * 109.87242 * 115.49824 * 10 9 7 40 40 H 1.08999 * 109.38609 * 58.68267 * 11 10 9 41 41 H 1.09001 * 109.38591 * 178.36663 * 11 10 9 42 42 H 1.08999 * 110.79388 * 271.23004 * 16 14 12 43 43 H 1.08999 * 110.96437 * 147.82436 * 16 14 12 44 44 H 1.08998 * 110.02533 * 212.96153 * 17 16 14 45 45 H 1.08993 * 110.06482 * 91.58037 * 17 16 14 46 46 H 0.96997 * 119.99812 * 180.02562 * 22 21 19 47 47 H 1.09001 * 108.44500 * 22.15359 * 27 9 7 48 48 H 1.09004 * 108.30806 * 264.75311 * 27 9 7 49 49 H 1.07995 * 120.34518 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2097 0.0000 4 6 3.5692 1.1998 0.0005 5 7 4.2538 0.0274 0.0016 6 6 5.7188 0.0442 0.0027 7 6 6.2200 0.0507 1.4238 8 8 5.4313 0.0416 2.3451 9 7 7.5448 0.0655 1.6711 10 6 8.5055 0.0749 0.5609 11 6 9.4504 -1.1109 0.7638 12 6 10.2147 -0.9516 2.0861 13 1 10.9456 -0.1458 2.0196 14 6 9.2822 -0.7209 3.2611 15 1 9.8752 -0.1639 3.9865 16 6 9.0496 -2.1012 3.8882 17 6 10.3660 -2.8423 3.5657 18 7 10.8966 -2.2415 2.3351 19 6 11.8735 -2.7863 1.5451 20 1 12.0946 -2.3505 0.5819 21 6 12.5793 -3.8988 1.9820 22 7 12.4374 -4.3239 3.2196 23 14 13.7307 -4.7926 0.8138 24 1 15.1128 -4.2795 0.9917 25 1 13.7015 -6.2481 1.1070 26 1 13.2930 -4.5608 -0.5863 27 6 8.0365 0.0713 3.0421 28 6 3.6017 -1.1508 -0.0039 29 8 4.2313 -2.1965 -0.0083 30 6 2.1966 -1.1769 0.0005 31 1 -0.3632 0.0000 -1.0277 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5137 34 1 1.6822 2.1486 -0.0008 35 1 4.1103 2.1344 0.0001 36 1 6.0722 0.9381 -0.5113 37 1 6.0927 -0.8417 -0.5105 38 1 7.9776 -0.0300 -0.3869 39 1 9.0714 1.0064 0.5685 40 1 8.8720 -2.0345 0.7870 41 1 10.1618 -1.1519 -0.0610 42 1 8.2003 -2.6002 3.4213 43 1 8.9048 -2.0208 4.9655 44 1 10.1685 -3.9026 3.4083 45 1 11.0775 -2.7126 4.3811 46 1 12.9310 -5.1010 3.5250 47 1 7.2559 -0.3272 3.6901 48 1 8.2297 1.1041 3.3322 49 1 1.6683 -2.1188 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036831351.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:41 Heat of formation + Delta-G solvation = -23.436568 kcal Electronic energy + Delta-G solvation = -30985.933092 eV Core-core repulsion = 26913.381504 eV Total energy + Delta-G solvation = -4072.551587 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.57125 -41.33810 -39.69061 -38.10784 -36.90486 -36.24092 -34.69137 -33.17753 -31.91199 -31.11988 -30.48187 -29.79957 -27.94679 -26.76679 -25.03750 -24.63937 -24.05455 -22.68091 -22.18646 -21.24644 -19.43291 -18.85293 -18.71236 -18.51870 -18.36334 -17.07320 -16.96597 -16.79244 -16.60469 -16.23325 -16.14392 -15.65079 -15.16132 -15.03992 -14.88194 -14.68574 -14.35370 -14.22688 -14.13946 -13.92188 -13.59534 -13.41764 -13.31802 -13.21837 -13.12548 -12.98797 -12.84583 -12.66517 -12.63220 -12.45136 -12.40030 -12.03591 -11.74840 -11.70055 -11.35261 -11.30558 -11.09935 -11.06529 -10.69322 -10.52867 -9.70929 -8.97462 -8.85644 -7.86341 -5.21439 -0.10292 0.93469 1.36856 1.43742 1.46256 1.48267 1.54868 2.03280 2.48344 2.67251 3.30616 3.33051 3.56886 3.62293 3.68974 3.74104 3.77904 3.88246 4.00302 4.04850 4.11288 4.16163 4.24686 4.35060 4.40706 4.45493 4.53013 4.54547 4.68430 4.75452 4.79196 4.84054 4.84731 4.86726 4.91923 4.98076 5.11735 5.12113 5.25423 5.32882 5.42128 5.50304 5.51451 5.57128 5.63133 5.69034 5.70919 6.07312 6.19213 6.28244 6.94881 7.01729 7.08458 7.77796 8.43120 9.25327 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019621 B = 0.002503 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.683458 B =11184.737426 C =11580.501665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.035 3.965 3 C -0.230 4.230 4 C 0.142 3.858 5 N -0.483 5.483 6 C 0.072 3.928 7 C 0.499 3.501 8 O -0.577 6.577 9 N -0.596 5.596 10 C 0.111 3.889 11 C -0.134 4.134 12 C 0.165 3.835 13 H 0.054 0.946 14 C -0.095 4.095 15 H 0.077 0.923 16 C -0.125 4.125 17 C 0.186 3.814 18 N -0.619 5.619 19 C -0.229 4.229 20 H 0.088 0.912 21 C -0.073 4.073 22 N -0.954 5.954 23 Si 0.975 3.025 24 H -0.285 1.285 25 H -0.301 1.301 26 H -0.265 1.265 27 C 0.142 3.858 28 C 0.499 3.501 29 O -0.616 6.616 30 C -0.295 4.295 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.186 0.814 35 H 0.208 0.792 36 H 0.182 0.818 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.031 0.969 41 H 0.073 0.927 42 H 0.041 0.959 43 H 0.082 0.918 44 H 0.006 0.994 45 H 0.005 0.995 46 H 0.244 0.756 47 H 0.066 0.934 48 H 0.090 0.910 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.194 21.232 -9.818 31.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.031 3.969 3 C -0.252 4.252 4 C 0.016 3.984 5 N -0.192 5.192 6 C -0.053 4.053 7 C 0.287 3.713 8 O -0.457 6.457 9 N -0.328 5.328 10 C -0.011 4.011 11 C -0.174 4.174 12 C 0.060 3.940 13 H 0.072 0.928 14 C -0.115 4.115 15 H 0.095 0.905 16 C -0.163 4.163 17 C 0.060 3.940 18 N -0.344 5.344 19 C -0.358 4.358 20 H 0.106 0.894 21 C -0.266 4.266 22 N -0.603 5.603 23 Si 0.803 3.197 24 H -0.212 1.212 25 H -0.228 1.228 26 H -0.190 1.190 27 C 0.019 3.981 28 C 0.305 3.695 29 O -0.504 6.504 30 C -0.317 4.317 31 H 0.117 0.883 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.203 0.797 35 H 0.224 0.776 36 H 0.199 0.801 37 H 0.136 0.864 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.050 0.950 41 H 0.092 0.908 42 H 0.060 0.940 43 H 0.100 0.900 44 H 0.025 0.975 45 H 0.023 0.977 46 H 0.053 0.947 47 H 0.084 0.916 48 H 0.108 0.892 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -21.005 20.423 -9.313 30.742 hybrid contribution 1.236 -1.907 0.206 2.282 sum -19.769 18.516 -9.107 28.576 Atomic orbital electron populations 1.21040 0.87956 1.04537 1.04367 1.20657 0.98530 0.92072 0.85669 1.21078 0.92416 0.99720 1.11996 1.22762 0.94433 0.89608 0.91606 1.45114 1.07818 1.07574 1.58702 1.22073 0.79183 1.09490 0.94516 1.21158 0.82207 0.75844 0.92069 1.90705 1.55828 1.51766 1.47421 1.47818 1.05303 1.71589 1.08100 1.22065 0.90537 0.99489 0.89046 1.22321 0.98364 0.97635 0.99085 1.20841 0.92037 0.87984 0.93167 0.92806 1.20658 0.96115 0.96181 0.98510 0.90467 1.22505 0.97209 0.96198 1.00406 1.20802 0.90619 0.94321 0.88258 1.45009 1.42922 1.19658 1.26807 1.19396 1.09467 1.08961 0.97950 0.89409 1.25702 1.01917 1.01141 0.97800 1.70199 1.46450 1.27160 1.16485 0.85113 0.78671 0.77128 0.78756 1.21161 1.22818 1.19001 1.20231 0.94520 1.00379 0.82961 1.17576 0.90398 0.82739 0.78788 1.90937 1.70323 1.32545 1.56592 1.21867 0.91456 1.00870 1.17501 0.88345 0.91180 0.88497 0.79656 0.77576 0.80070 0.86380 0.86951 0.87185 0.94976 0.90819 0.94005 0.89958 0.97517 0.97712 0.94660 0.91578 0.89188 0.84638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 10.03 71.24 0.71 -0.30 16 2 C 0.03 0.54 5.89 -19.82 -0.12 0.42 16 3 C -0.23 -2.45 9.71 22.08 0.21 -2.24 16 4 C 0.14 1.73 10.28 83.42 0.86 2.58 16 5 N -0.48 -10.50 2.07 -655.05 -1.36 -11.86 16 6 C 0.07 1.36 4.15 85.63 0.36 1.72 16 7 C 0.50 13.36 7.75 87.65 0.68 14.04 16 8 O -0.58 -20.37 15.88 -3.04 -0.05 -20.41 16 9 N -0.60 -14.89 3.00 -830.24 -2.49 -17.37 16 10 C 0.11 2.20 6.34 86.31 0.55 2.74 16 11 C -0.13 -4.28 5.19 30.77 0.16 -4.12 16 12 C 0.17 6.23 3.44 44.49 0.15 6.39 16 13 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 14 C -0.10 -3.18 2.45 -12.27 -0.03 -3.21 16 15 H 0.08 2.43 8.04 -2.39 -0.02 2.42 16 16 C -0.12 -5.05 6.36 31.22 0.20 -4.85 16 17 C 0.19 9.65 5.35 86.81 0.46 10.11 16 18 N -0.62 -31.47 3.04 -671.85 -2.04 -33.52 16 19 C -0.23 -12.61 9.80 84.03 0.82 -11.78 16 20 H 0.09 4.51 7.71 -2.91 -0.02 4.49 16 21 C -0.07 -4.21 5.42 84.86 0.46 -3.75 16 22 N -0.95 -59.27 10.58 21.65 0.23 -59.04 16 23 Si 0.97 46.46 29.56 68.60 2.03 48.49 16 24 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 25 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 C 0.14 3.93 5.95 85.34 0.51 4.44 16 28 C 0.50 15.50 7.40 84.82 0.63 16.13 16 29 O -0.62 -25.63 16.63 -5.50 -0.09 -25.72 16 30 C -0.30 -7.35 9.65 22.40 0.22 -7.13 16 31 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.66 8.09 -2.39 -0.02 0.65 16 33 H 0.10 0.40 8.10 -2.39 -0.02 0.38 16 34 H 0.19 0.45 8.06 -2.91 -0.02 0.43 16 35 H 0.21 0.47 8.04 -2.91 -0.02 0.45 16 36 H 0.18 1.07 7.78 -2.39 -0.02 1.05 16 37 H 0.12 2.65 6.94 -2.39 -0.02 2.63 16 38 H 0.11 1.50 5.90 -2.39 -0.01 1.49 16 39 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 2.33 7.98 -2.39 -0.02 2.31 16 42 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 44 H 0.01 0.38 7.36 -2.39 -0.02 0.37 16 45 H 0.00 0.28 7.68 -2.39 -0.02 0.26 16 46 H 0.24 14.85 8.31 -92.71 -0.77 14.08 16 47 H 0.07 2.12 6.80 -2.39 -0.02 2.10 16 48 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.14 3.40 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -91.62 389.08 4.00 -87.62 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.94 Total: 10.64 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 6.83 Total: 21.18 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -5.66 Total: -121.79 kcal Atomic # 8 Polarization: -45.99 SS G_CDS: -0.14 Total: -46.13 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -91.62 4.00 -87.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036831351.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.187 kcal (2) G-P(sol) polarization free energy of solvation -91.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds