Wall clock time and date at job start Wed Apr 1 2020 05:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.40202 * 120.36708 * 2 1 4 4 C 1.35349 * 119.94500 * 179.76762 * 3 2 1 5 5 N 1.35758 * 120.70158 * 0.50752 * 4 3 2 6 6 C 1.46506 * 119.62426 * 179.76445 * 5 4 3 7 7 C 1.50699 * 109.46928 * 269.72645 * 6 5 4 8 8 O 1.21282 * 120.00041 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00037 * 179.97438 * 7 6 5 10 10 C 1.46597 * 119.68135 * 0.02562 * 9 7 6 11 11 C 1.53951 * 110.57516 * 227.82197 * 10 9 7 12 12 C 1.51521 * 107.34820 * 308.94895 * 11 10 9 13 13 H 1.09002 * 109.27451 * 306.97456 * 12 11 10 14 14 C 1.55364 * 107.79128 * 64.85555 * 12 11 10 15 15 H 1.08994 * 111.51254 * 51.19337 * 14 12 11 16 16 C 1.53744 * 100.21679 * 169.09003 * 14 12 11 17 17 C 1.55287 * 101.84346 * 320.90562 * 16 14 12 18 18 N 1.45465 * 117.35018 * 181.91044 * 12 11 10 19 19 C 1.36931 * 126.41047 * 30.64247 * 18 12 11 20 20 H 1.08005 * 119.99809 * 359.97438 * 19 18 12 21 21 C 1.38810 * 120.00148 * 180.02562 * 19 18 12 22 22 N 1.31618 * 120.00197 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99837 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47352 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47210 * 119.99978 * 23 21 19 26 26 H 1.48508 * 109.46861 * 239.99436 * 23 21 19 27 27 C 1.47720 * 119.68402 * 179.72515 * 9 7 6 28 28 C 1.34662 * 120.75559 * 359.48617 * 5 4 3 29 29 O 1.22055 * 119.99067 * 180.27555 * 28 5 4 30 30 C 1.36393 * 120.36597 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47233 * 269.98424 * 1 2 3 32 32 H 1.09004 * 109.46627 * 29.98188 * 1 2 3 33 33 H 1.08991 * 109.46883 * 149.97911 * 1 2 3 34 34 H 1.07997 * 120.02083 * 0.04253 * 3 2 1 35 35 H 1.07997 * 119.64908 * 180.27186 * 4 3 2 36 36 H 1.09004 * 109.47073 * 29.72473 * 6 5 4 37 37 H 1.09000 * 109.47212 * 149.72555 * 6 5 4 38 38 H 1.08999 * 109.25482 * 348.10735 * 10 9 7 39 39 H 1.09000 * 109.25284 * 107.54151 * 10 9 7 40 40 H 1.09006 * 109.88057 * 68.40884 * 11 10 9 41 41 H 1.08997 * 109.88106 * 189.41139 * 11 10 9 42 42 H 1.08998 * 110.95514 * 202.76795 * 16 14 12 43 43 H 1.08999 * 110.98789 * 79.05733 * 16 14 12 44 44 H 1.08999 * 109.92155 * 263.13237 * 17 16 14 45 45 H 1.08999 * 110.08881 * 141.91535 * 17 16 14 46 46 H 0.96993 * 120.00209 * 180.02562 * 22 21 19 47 47 H 1.08999 * 110.07086 * 247.15667 * 27 9 7 48 48 H 1.08999 * 110.06680 * 8.73812 * 27 9 7 49 49 H 1.07997 * 120.35025 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2158 1.2097 0.0000 4 6 3.5693 1.1997 0.0048 5 7 4.2538 0.0274 -0.0008 6 6 5.7188 0.0441 -0.0007 7 6 6.2211 0.0498 -1.4215 8 8 5.4331 0.0403 -2.3433 9 7 7.5461 0.0655 -1.6677 10 6 8.4925 0.0764 -0.5481 11 6 9.5681 1.1573 -0.7594 12 6 10.1408 0.9595 -2.1482 13 1 10.4665 -0.0748 -2.2591 14 6 9.0063 1.2352 -3.1733 15 1 8.5198 2.1918 -2.9833 16 6 9.8199 1.2714 -4.4773 17 6 11.1077 2.0145 -4.0289 18 7 11.2161 1.8482 -2.5606 19 6 12.1534 2.4231 -1.7446 20 1 12.1359 2.2297 -0.6822 21 6 13.1254 3.2553 -2.2827 22 7 13.1464 3.4913 -3.5774 23 14 14.4036 4.0401 -1.1694 24 1 14.1631 3.6191 0.2342 25 1 15.7601 3.6072 -1.5910 26 1 14.3036 5.5187 -1.2663 27 6 8.0309 0.0649 -3.0631 28 6 3.6017 -1.1508 -0.0008 29 8 4.2312 -2.1965 -0.0007 30 6 2.1965 -1.1768 -0.0005 31 1 -0.3633 -0.0003 1.0276 32 1 -0.3633 0.8902 -0.5136 33 1 -0.3633 -0.8897 -0.5141 34 1 1.6822 2.1486 0.0007 35 1 4.1104 2.1343 0.0092 36 1 6.0719 0.9383 0.5131 37 1 6.0923 -0.8416 0.5132 38 1 7.9531 0.2819 0.3765 39 1 8.9729 -0.8992 -0.4741 40 1 9.1190 2.1475 -0.6813 41 1 10.3553 1.0477 -0.0136 42 1 9.2943 1.8335 -5.2492 43 1 10.0513 0.2634 -4.8213 44 1 11.0316 3.0728 -4.2782 45 1 11.9799 1.5798 -4.5172 46 1 13.8258 4.0725 -3.9535 47 1 8.5411 -0.8733 -3.2814 48 1 7.1959 0.2064 -3.7492 49 1 1.6683 -2.1188 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036831352.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:47 Heat of formation + Delta-G solvation = 1.170174 kcal Electronic energy + Delta-G solvation = -30739.568435 eV Core-core repulsion = 26668.083876 eV Total energy + Delta-G solvation = -4071.484559 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 3.32 seconds Orbital eigenvalues (eV) -41.70996 -40.13669 -38.30736 -37.18750 -35.58202 -35.39830 -32.80804 -31.64921 -30.96324 -29.96469 -29.37342 -28.32624 -26.90388 -24.93123 -23.92707 -23.48524 -22.48558 -21.82689 -20.22863 -19.96267 -19.17010 -17.78484 -17.75198 -17.38478 -16.40176 -16.23939 -15.78042 -15.51246 -15.27308 -14.95379 -14.47376 -14.41017 -14.27619 -13.97992 -13.83977 -13.66376 -13.47200 -12.99586 -12.95410 -12.75859 -12.55354 -12.48944 -12.29458 -11.99131 -11.87810 -11.71384 -11.54819 -11.48223 -10.91643 -10.86669 -10.80231 -10.37652 -10.17884 -10.14948 -10.08579 -9.94799 -9.69615 -9.64147 -9.52261 -8.67959 -8.63063 -8.16500 -6.89400 -5.76897 -3.10436 0.60840 1.69154 2.25260 2.46621 2.96029 3.35125 3.40168 3.43175 3.48724 4.24931 4.26759 4.33771 4.43408 4.48062 4.70088 4.82324 4.89535 4.97282 4.98418 5.08346 5.15560 5.19936 5.26571 5.29487 5.46355 5.49828 5.50620 5.51910 5.71297 5.72913 5.81810 5.83451 5.96304 6.06242 6.11016 6.13569 6.16116 6.25649 6.30545 6.40467 6.54161 6.57317 6.74740 6.86749 6.99207 7.31075 7.50451 7.56408 7.76199 7.87759 8.03453 8.18834 9.13705 9.77406 10.45331 11.35614 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022452 B = 0.002304 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.780406 B =12147.409618 C =12460.817796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.015 3.985 3 C -0.231 4.231 4 C 0.147 3.853 5 N -0.481 5.481 6 C 0.070 3.930 7 C 0.501 3.499 8 O -0.535 6.535 9 N -0.601 5.601 10 C 0.108 3.892 11 C -0.129 4.129 12 C 0.166 3.834 13 H 0.020 0.980 14 C -0.123 4.123 15 H 0.080 0.920 16 C -0.136 4.136 17 C 0.176 3.824 18 N -0.595 5.595 19 C -0.226 4.226 20 H 0.079 0.921 21 C -0.008 4.008 22 N -0.920 5.920 23 Si 0.910 3.090 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.128 3.872 28 C 0.522 3.478 29 O -0.553 6.553 30 C -0.249 4.249 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.145 0.855 35 H 0.161 0.839 36 H 0.122 0.878 37 H 0.130 0.870 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.039 0.961 46 H 0.252 0.748 47 H 0.071 0.929 48 H 0.089 0.911 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.400 -4.112 8.529 23.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.012 3.988 3 C -0.254 4.254 4 C 0.020 3.980 5 N -0.191 5.191 6 C -0.056 4.056 7 C 0.287 3.713 8 O -0.412 6.412 9 N -0.335 5.335 10 C -0.016 4.016 11 C -0.168 4.168 12 C 0.058 3.942 13 H 0.038 0.962 14 C -0.144 4.144 15 H 0.098 0.902 16 C -0.175 4.175 17 C 0.052 3.948 18 N -0.319 5.319 19 C -0.354 4.354 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.568 5.568 23 Si 0.741 3.259 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.006 3.994 28 C 0.325 3.675 29 O -0.435 6.435 30 C -0.271 4.271 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.163 0.837 35 H 0.179 0.821 36 H 0.140 0.860 37 H 0.147 0.853 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.089 0.911 48 H 0.108 0.892 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -21.143 -4.662 8.022 23.089 hybrid contribution 0.918 0.622 0.506 1.219 sum -20.225 -4.040 8.528 22.318 Atomic orbital electron populations 1.20923 0.90395 1.03575 1.03007 1.20202 0.96739 0.92678 0.89213 1.20513 0.92320 0.98920 1.13695 1.21916 0.93645 0.89542 0.92903 1.45079 1.07283 1.07298 1.59472 1.21914 0.79505 1.07212 0.96933 1.20593 0.82814 0.76974 0.90933 1.90724 1.54862 1.49916 1.45677 1.48283 1.04838 1.72133 1.08201 1.21879 0.91417 1.00535 0.87719 1.21885 0.97047 0.97944 0.99900 1.20640 0.87992 0.94087 0.91485 0.96231 1.22739 0.95747 0.97510 0.98402 0.90194 1.22714 0.98442 1.00653 0.95698 1.21540 0.91625 0.98400 0.83222 1.44210 1.30090 1.54122 1.03480 1.19026 1.04534 1.21833 0.90037 0.90309 1.24805 0.99326 1.00286 0.96057 1.69946 1.36103 1.40950 1.09779 0.86078 0.81455 0.78941 0.79463 1.20531 1.21773 1.21809 1.21756 0.97971 0.98629 0.81052 1.17082 0.89350 0.82429 0.78674 1.90951 1.69165 1.30283 1.53131 1.21899 0.92241 0.99529 1.13418 0.90146 0.90752 0.90844 0.83723 0.82130 0.85989 0.85255 0.90496 0.91082 0.91312 0.90272 0.92042 0.92292 0.92713 0.94278 0.93764 0.91075 0.89229 0.83626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.03 36.01 0.36 -0.29 16 2 C 0.02 0.13 5.89 -104.55 -0.62 -0.48 16 3 C -0.23 -1.77 9.71 -39.87 -0.39 -2.16 16 4 C 0.15 1.25 10.28 -16.84 -0.17 1.08 16 5 N -0.48 -5.53 2.07 -121.06 -0.25 -5.78 16 6 C 0.07 0.73 4.14 -5.19 -0.02 0.71 16 7 C 0.50 7.10 7.74 -10.99 -0.08 7.02 16 8 O -0.53 -9.55 15.79 5.56 0.09 -9.47 16 9 N -0.60 -8.27 2.99 -172.19 -0.52 -8.79 16 10 C 0.11 1.27 6.21 -3.49 -0.02 1.25 16 11 C -0.13 -1.96 5.48 -26.98 -0.15 -2.11 16 12 C 0.17 3.15 2.57 -67.98 -0.17 2.97 16 13 H 0.02 0.40 7.90 -51.93 -0.41 -0.01 16 14 C -0.12 -2.11 2.88 -89.11 -0.26 -2.37 16 15 H 0.08 1.46 8.12 -51.93 -0.42 1.04 16 16 C -0.14 -2.47 6.54 -25.13 -0.16 -2.63 16 17 C 0.18 4.14 5.45 -1.91 -0.01 4.13 16 18 N -0.59 -14.30 3.35 -163.09 -0.55 -14.85 16 19 C -0.23 -5.95 9.88 -15.06 -0.15 -6.09 16 20 H 0.08 1.98 7.22 -52.48 -0.38 1.60 16 21 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 22 N -0.92 -26.41 10.43 55.49 0.58 -25.83 16 23 Si 0.91 21.43 29.55 -169.99 -5.02 16.41 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 C 0.13 1.92 5.98 -3.50 -0.02 1.90 16 28 C 0.52 7.38 7.40 -15.44 -0.11 7.26 16 29 O -0.55 -9.79 16.64 4.87 0.08 -9.71 16 30 C -0.25 -2.82 9.65 -39.38 -0.38 -3.20 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.31 8.10 -51.93 -0.42 -0.11 16 33 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 34 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.16 0.87 8.03 -52.49 -0.42 0.45 16 36 H 0.12 0.81 7.41 -51.93 -0.38 0.42 16 37 H 0.13 1.34 7.24 -51.93 -0.38 0.97 16 38 H 0.08 0.65 5.83 -51.93 -0.30 0.35 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 41 H 0.08 1.22 7.62 -51.93 -0.40 0.83 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 44 H 0.05 1.43 7.21 -51.93 -0.37 1.06 16 45 H 0.04 1.01 7.76 -51.93 -0.40 0.61 16 46 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 47 H 0.07 1.04 8.06 -51.93 -0.42 0.62 16 48 H 0.09 1.42 6.99 -51.93 -0.36 1.05 16 49 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 388.15 15.07 5.85 5.85 Total: -1.00 -35.73 388.15 -9.78 -45.51 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -7.58 Total: -0.01 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: -2.46 Total: 6.66 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.73 Total: -55.24 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: 0.17 Total: -19.18 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.73 -9.78 -45.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036831352.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.677 kcal (2) G-P(sol) polarization free energy of solvation -35.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.32 seconds