Wall clock time and date at job start Wed Apr 1 2020 05:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.40202 * 120.36708 * 2 1 4 4 C 1.35349 * 119.94500 * 179.76762 * 3 2 1 5 5 N 1.35758 * 120.70158 * 0.50752 * 4 3 2 6 6 C 1.46506 * 119.62426 * 179.76445 * 5 4 3 7 7 C 1.50699 * 109.46928 * 269.72645 * 6 5 4 8 8 O 1.21282 * 120.00041 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00037 * 179.97438 * 7 6 5 10 10 C 1.46597 * 119.68135 * 0.02562 * 9 7 6 11 11 C 1.53951 * 110.57516 * 227.82197 * 10 9 7 12 12 C 1.51521 * 107.34820 * 308.94895 * 11 10 9 13 13 H 1.09002 * 109.27451 * 306.97456 * 12 11 10 14 14 C 1.55364 * 107.79128 * 64.85555 * 12 11 10 15 15 H 1.08994 * 111.51254 * 51.19337 * 14 12 11 16 16 C 1.53744 * 100.21679 * 169.09003 * 14 12 11 17 17 C 1.55287 * 101.84346 * 320.90562 * 16 14 12 18 18 N 1.45465 * 117.35018 * 181.91044 * 12 11 10 19 19 C 1.36931 * 126.41047 * 30.64247 * 18 12 11 20 20 H 1.08005 * 119.99809 * 359.97438 * 19 18 12 21 21 C 1.38810 * 120.00148 * 180.02562 * 19 18 12 22 22 N 1.31618 * 120.00197 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99837 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47352 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47210 * 119.99978 * 23 21 19 26 26 H 1.48508 * 109.46861 * 239.99436 * 23 21 19 27 27 C 1.47720 * 119.68402 * 179.72515 * 9 7 6 28 28 C 1.34662 * 120.75559 * 359.48617 * 5 4 3 29 29 O 1.22055 * 119.99067 * 180.27555 * 28 5 4 30 30 C 1.36393 * 120.36597 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47233 * 269.98424 * 1 2 3 32 32 H 1.09004 * 109.46627 * 29.98188 * 1 2 3 33 33 H 1.08991 * 109.46883 * 149.97911 * 1 2 3 34 34 H 1.07997 * 120.02083 * 0.04253 * 3 2 1 35 35 H 1.07997 * 119.64908 * 180.27186 * 4 3 2 36 36 H 1.09004 * 109.47073 * 29.72473 * 6 5 4 37 37 H 1.09000 * 109.47212 * 149.72555 * 6 5 4 38 38 H 1.08999 * 109.25482 * 348.10735 * 10 9 7 39 39 H 1.09000 * 109.25284 * 107.54151 * 10 9 7 40 40 H 1.09006 * 109.88057 * 68.40884 * 11 10 9 41 41 H 1.08997 * 109.88106 * 189.41139 * 11 10 9 42 42 H 1.08998 * 110.95514 * 202.76795 * 16 14 12 43 43 H 1.08999 * 110.98789 * 79.05733 * 16 14 12 44 44 H 1.08999 * 109.92155 * 263.13237 * 17 16 14 45 45 H 1.08999 * 110.08881 * 141.91535 * 17 16 14 46 46 H 0.96993 * 120.00209 * 180.02562 * 22 21 19 47 47 H 1.08999 * 110.07086 * 247.15667 * 27 9 7 48 48 H 1.08999 * 110.06680 * 8.73812 * 27 9 7 49 49 H 1.07997 * 120.35025 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2158 1.2097 0.0000 4 6 3.5693 1.1997 0.0048 5 7 4.2538 0.0274 -0.0008 6 6 5.7188 0.0441 -0.0007 7 6 6.2211 0.0498 -1.4215 8 8 5.4331 0.0403 -2.3433 9 7 7.5461 0.0655 -1.6677 10 6 8.4925 0.0764 -0.5481 11 6 9.5681 1.1573 -0.7594 12 6 10.1408 0.9595 -2.1482 13 1 10.4665 -0.0748 -2.2591 14 6 9.0063 1.2352 -3.1733 15 1 8.5198 2.1918 -2.9833 16 6 9.8199 1.2714 -4.4773 17 6 11.1077 2.0145 -4.0289 18 7 11.2161 1.8482 -2.5606 19 6 12.1534 2.4231 -1.7446 20 1 12.1359 2.2297 -0.6822 21 6 13.1254 3.2553 -2.2827 22 7 13.1464 3.4913 -3.5774 23 14 14.4036 4.0401 -1.1694 24 1 14.1631 3.6191 0.2342 25 1 15.7601 3.6072 -1.5910 26 1 14.3036 5.5187 -1.2663 27 6 8.0309 0.0649 -3.0631 28 6 3.6017 -1.1508 -0.0008 29 8 4.2312 -2.1965 -0.0007 30 6 2.1965 -1.1768 -0.0005 31 1 -0.3633 -0.0003 1.0276 32 1 -0.3633 0.8902 -0.5136 33 1 -0.3633 -0.8897 -0.5141 34 1 1.6822 2.1486 0.0007 35 1 4.1104 2.1343 0.0092 36 1 6.0719 0.9383 0.5131 37 1 6.0923 -0.8416 0.5132 38 1 7.9531 0.2819 0.3765 39 1 8.9729 -0.8992 -0.4741 40 1 9.1190 2.1475 -0.6813 41 1 10.3553 1.0477 -0.0136 42 1 9.2943 1.8335 -5.2492 43 1 10.0513 0.2634 -4.8213 44 1 11.0316 3.0728 -4.2782 45 1 11.9799 1.5798 -4.5172 46 1 13.8258 4.0725 -3.9535 47 1 8.5411 -0.8733 -3.2814 48 1 7.1959 0.2064 -3.7492 49 1 1.6683 -2.1188 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036831352.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:46 Heat of formation + Delta-G solvation = -21.336012 kcal Electronic energy + Delta-G solvation = -30740.544376 eV Core-core repulsion = 26668.083876 eV Total energy + Delta-G solvation = -4072.460500 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.57094 -41.32294 -39.68299 -38.09020 -36.90012 -36.24145 -34.56868 -33.04356 -31.97161 -31.09796 -30.46373 -29.65098 -27.80157 -26.65804 -24.87357 -24.64669 -23.78888 -22.63206 -21.89257 -21.33326 -20.38184 -18.86836 -18.53778 -18.51965 -17.95491 -17.05111 -16.95795 -16.81653 -16.55650 -16.21057 -15.89041 -15.64386 -15.16844 -15.08565 -15.01729 -14.85791 -14.28588 -14.20963 -14.09490 -13.88956 -13.60904 -13.36559 -13.33231 -13.12932 -13.11430 -12.98989 -12.84129 -12.71845 -12.49431 -12.45128 -12.10497 -11.95909 -11.79851 -11.61308 -11.54225 -11.23132 -11.08330 -10.98438 -10.71226 -10.53865 -9.79321 -8.97693 -8.86976 -7.82276 -5.16839 -0.11009 0.92800 1.40843 1.43046 1.47630 1.48220 1.58039 1.96434 2.51438 2.66293 3.29583 3.36977 3.48406 3.64039 3.72749 3.81309 3.85239 3.87733 3.97542 4.05387 4.14129 4.19471 4.21815 4.34475 4.37465 4.40163 4.49437 4.63859 4.67929 4.76508 4.79944 4.81085 4.84942 4.89972 4.92044 5.00710 5.06740 5.12301 5.22209 5.25745 5.42468 5.50205 5.54002 5.54237 5.65348 5.67031 5.76904 6.06596 6.21338 6.24327 6.92741 7.00055 7.10042 7.80514 8.49490 9.29983 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022452 B = 0.002304 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.780406 B =12147.409618 C =12460.817796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.033 3.967 3 C -0.229 4.229 4 C 0.138 3.862 5 N -0.483 5.483 6 C 0.071 3.929 7 C 0.499 3.501 8 O -0.577 6.577 9 N -0.602 5.602 10 C 0.113 3.887 11 C -0.121 4.121 12 C 0.155 3.845 13 H 0.017 0.983 14 C -0.105 4.105 15 H 0.070 0.930 16 C -0.124 4.124 17 C 0.182 3.818 18 N -0.615 5.615 19 C -0.225 4.225 20 H 0.092 0.908 21 C -0.073 4.073 22 N -0.956 5.956 23 Si 0.974 3.026 24 H -0.260 1.260 25 H -0.299 1.299 26 H -0.296 1.296 27 C 0.135 3.865 28 C 0.503 3.497 29 O -0.610 6.610 30 C -0.290 4.290 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.181 0.819 35 H 0.198 0.802 36 H 0.171 0.829 37 H 0.132 0.868 38 H 0.121 0.879 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.018 0.982 45 H 0.002 0.998 46 H 0.244 0.756 47 H 0.078 0.922 48 H 0.083 0.917 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.620 -3.185 10.997 26.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.029 3.971 3 C -0.251 4.251 4 C 0.012 3.988 5 N -0.192 5.192 6 C -0.054 4.054 7 C 0.287 3.713 8 O -0.457 6.457 9 N -0.334 5.334 10 C -0.009 4.009 11 C -0.160 4.160 12 C 0.048 3.952 13 H 0.035 0.965 14 C -0.126 4.126 15 H 0.088 0.912 16 C -0.163 4.163 17 C 0.057 3.943 18 N -0.339 5.339 19 C -0.354 4.354 20 H 0.110 0.890 21 C -0.266 4.266 22 N -0.606 5.606 23 Si 0.803 3.197 24 H -0.184 1.184 25 H -0.226 1.226 26 H -0.224 1.224 27 C 0.013 3.987 28 C 0.309 3.691 29 O -0.498 6.498 30 C -0.312 4.312 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.199 0.801 35 H 0.215 0.785 36 H 0.188 0.812 37 H 0.149 0.851 38 H 0.139 0.861 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.037 0.963 45 H 0.020 0.980 46 H 0.053 0.947 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -23.399 -3.727 10.540 25.932 hybrid contribution 1.527 0.383 -0.289 1.601 sum -21.872 -3.343 10.251 24.385 Atomic orbital electron populations 1.21036 0.87952 1.04539 1.04367 1.20638 0.98529 0.92054 0.85909 1.21050 0.92345 0.99873 1.11867 1.22657 0.94481 0.89664 0.92031 1.45106 1.07799 1.07527 1.58791 1.22104 0.79212 1.09579 0.94501 1.21219 0.82306 0.75645 0.92116 1.90705 1.55829 1.51777 1.47365 1.48329 1.05327 1.71811 1.07958 1.21992 0.90626 0.99708 0.88596 1.21800 0.97898 0.99113 0.97157 1.20894 0.87153 0.92642 0.94525 0.96508 1.22541 0.95325 0.97944 0.96758 0.91183 1.22589 0.95992 1.00872 0.96813 1.21293 0.92891 0.96618 0.83504 1.44494 1.31225 1.54566 1.03615 1.19470 1.04372 1.20625 0.90908 0.89045 1.25645 1.01815 1.01777 0.97332 1.70174 1.36798 1.42062 1.11539 0.85057 0.78433 0.77419 0.78750 1.18355 1.22636 1.22372 1.21552 0.97088 0.97732 0.82347 1.17513 0.90315 0.82599 0.78712 1.90895 1.70224 1.32154 1.56565 1.21901 0.91508 1.00798 1.16955 0.88350 0.88843 0.90851 0.80141 0.78511 0.81179 0.85065 0.86147 0.90109 0.91650 0.90207 0.90502 0.90804 0.96347 0.97970 0.94698 0.90424 0.89838 0.84086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 10.03 71.24 0.71 -0.23 16 2 C 0.03 0.49 5.89 -19.82 -0.12 0.37 16 3 C -0.23 -2.64 9.71 22.08 0.21 -2.42 16 4 C 0.14 1.85 10.28 83.42 0.86 2.71 16 5 N -0.48 -10.10 2.07 -655.05 -1.36 -11.46 16 6 C 0.07 1.27 4.14 85.63 0.35 1.62 16 7 C 0.50 13.05 7.74 87.66 0.68 13.73 16 8 O -0.58 -20.00 15.79 -3.04 -0.05 -20.05 16 9 N -0.60 -15.07 2.99 -817.07 -2.44 -17.51 16 10 C 0.11 2.27 6.21 86.68 0.54 2.80 16 11 C -0.12 -3.38 5.48 30.43 0.17 -3.21 16 12 C 0.15 5.70 2.57 45.51 0.12 5.82 16 13 H 0.02 0.66 7.90 -2.39 -0.02 0.64 16 14 C -0.11 -3.49 2.88 -9.82 -0.03 -3.52 16 15 H 0.07 2.48 8.12 -2.39 -0.02 2.46 16 16 C -0.12 -4.49 6.54 31.63 0.21 -4.28 16 17 C 0.18 8.88 5.45 86.84 0.47 9.35 16 18 N -0.61 -29.88 3.35 -669.89 -2.24 -32.13 16 19 C -0.22 -11.85 9.88 84.03 0.83 -11.02 16 20 H 0.09 4.47 7.22 -2.91 -0.02 4.45 16 21 C -0.07 -4.07 5.49 84.86 0.47 -3.60 16 22 N -0.96 -57.12 10.43 21.65 0.23 -56.89 16 23 Si 0.97 44.55 29.55 68.60 2.03 46.58 16 24 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 25 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 26 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 27 C 0.14 3.87 5.98 86.06 0.51 4.39 16 28 C 0.50 14.22 7.40 84.82 0.63 14.85 16 29 O -0.61 -22.41 16.64 -5.49 -0.09 -22.50 16 30 C -0.29 -6.56 9.65 22.40 0.22 -6.34 16 31 H 0.10 0.47 8.14 -2.39 -0.02 0.46 16 32 H 0.09 0.41 8.10 -2.38 -0.02 0.39 16 33 H 0.07 0.60 8.09 -2.39 -0.02 0.58 16 34 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 35 H 0.20 1.10 8.03 -2.91 -0.02 1.08 16 36 H 0.17 1.32 7.41 -2.38 -0.02 1.30 16 37 H 0.13 2.39 7.24 -2.39 -0.02 2.38 16 38 H 0.12 1.42 5.83 -2.39 -0.01 1.41 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.06 1.89 8.12 -2.38 -0.02 1.87 16 41 H 0.08 2.25 7.62 -2.39 -0.02 2.23 16 42 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.07 2.46 8.11 -2.39 -0.02 2.44 16 44 H 0.02 1.01 7.21 -2.39 -0.02 0.99 16 45 H 0.00 0.11 7.76 -2.39 -0.02 0.09 16 46 H 0.24 14.26 8.31 -92.71 -0.77 13.49 16 47 H 0.08 2.14 8.06 -2.39 -0.02 2.12 16 48 H 0.08 2.55 6.99 -2.39 -0.02 2.53 16 49 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -84.37 388.15 3.85 -80.52 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.95 Total: 12.42 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: 6.83 Total: 21.02 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -5.82 Total: -117.99 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -0.14 Total: -42.55 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -84.37 3.85 -80.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036831352.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.186 kcal (2) G-P(sol) polarization free energy of solvation -84.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds