Wall clock time and date at job start Wed Apr 1 2020 03:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37995 * 120.82711 * 2 1 4 4 C 1.39125 * 119.26880 * 180.27787 * 3 2 1 5 5 O 1.35499 * 119.52268 * 179.69716 * 4 3 2 6 6 N 1.32439 * 120.94550 * 359.71112 * 4 3 2 7 7 C 1.31631 * 121.80213 * 0.02562 * 6 4 3 8 8 C 1.50700 * 119.68617 * 179.97438 * 7 6 4 9 9 C 1.39563 * 120.62746 * 0.02562 * 7 6 4 10 10 C 1.47617 * 120.49868 * 179.97438 * 9 7 6 11 11 O 1.21574 * 120.00033 * 89.99730 * 10 9 7 12 12 N 1.34775 * 119.99983 * 269.99592 * 10 9 7 13 13 C 1.46608 * 119.68382 * 0.02562 * 12 10 9 14 14 C 1.53946 * 110.57689 * 227.84639 * 13 12 10 15 15 C 1.51519 * 107.34807 * 308.94813 * 14 13 12 16 16 H 1.09004 * 108.80263 * 306.55987 * 15 14 13 17 17 C 1.55634 * 107.82041 * 65.01037 * 15 14 13 18 18 H 1.08998 * 111.67941 * 51.36547 * 17 15 14 19 19 C 1.53738 * 100.11633 * 169.28212 * 17 15 14 20 20 C 1.55284 * 101.84438 * 320.76407 * 19 17 15 21 21 N 1.45467 * 117.35122 * 181.91227 * 15 14 13 22 22 C 1.36932 * 126.40512 * 30.64859 * 21 15 14 23 23 H 1.07994 * 120.00573 * 340.29990 * 22 21 15 24 24 C 1.38815 * 119.99681 * 160.28972 * 22 21 15 25 25 N 1.31620 * 119.99632 * 173.44341 * 24 22 21 26 26 Si 1.86803 * 120.00231 * 353.45085 * 24 22 21 27 27 H 1.48500 * 109.47136 * 179.97438 * 26 24 22 28 28 H 1.48500 * 109.47052 * 59.99541 * 26 24 22 29 29 H 1.48494 * 109.46814 * 299.99903 * 26 24 22 30 30 C 1.47646 * 119.53709 * 180.34969 * 12 10 9 31 31 H 1.09002 * 109.46790 * 270.27688 * 1 2 3 32 32 H 1.09003 * 109.46979 * 30.27193 * 1 2 3 33 33 H 1.08993 * 109.47210 * 150.28012 * 1 2 3 34 34 H 1.07999 * 120.36185 * 359.96560 * 3 2 1 35 35 H 0.96697 * 113.99541 * 270.01130 * 5 4 3 36 36 H 1.09001 * 109.47389 * 270.02716 * 8 7 6 37 37 H 1.08996 * 109.47364 * 30.02433 * 8 7 6 38 38 H 1.08997 * 109.47104 * 150.02495 * 8 7 6 39 39 H 1.08998 * 109.25193 * 107.56145 * 13 12 10 40 40 H 1.08999 * 109.25470 * 348.13136 * 13 12 10 41 41 H 1.08996 * 109.88002 * 189.48802 * 14 13 12 42 42 H 1.08999 * 109.88304 * 68.40986 * 14 13 12 43 43 H 1.09003 * 110.95266 * 202.62157 * 19 17 15 44 44 H 1.09000 * 110.95194 * 78.90505 * 19 17 15 45 45 H 1.09003 * 109.91835 * 263.13041 * 20 19 17 46 46 H 1.09001 * 110.08987 * 141.92281 * 20 19 17 47 47 H 0.96997 * 120.01059 * 354.95694 * 25 24 22 48 48 H 1.09005 * 110.40415 * 8.46580 * 30 12 10 49 49 H 1.08998 * 109.49940 * 247.04723 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1472 -0.0059 5 8 4.3043 2.3076 -0.0121 6 7 4.2547 -0.0068 -0.0057 7 6 3.6204 -1.1602 -0.0006 8 6 4.4079 -2.4451 -0.0012 9 6 2.2255 -1.2044 0.0045 10 6 1.5170 -2.4995 0.0097 11 8 1.2291 -3.0306 1.0647 12 7 1.1894 -3.0931 -1.1551 13 6 1.5405 -2.4467 -2.4233 14 6 0.3303 -2.4285 -3.3746 15 6 -0.2108 -3.8420 -3.4444 16 1 0.6024 -4.5167 -3.7121 17 6 -0.7470 -4.2171 -2.0323 18 1 -1.4313 -3.4609 -1.6475 19 6 -1.4868 -5.5237 -2.3626 20 6 -2.1327 -5.1864 -3.7338 21 7 -1.3430 -4.0815 -4.3259 22 6 -1.6231 -3.4143 -5.4884 23 1 -1.1855 -2.4445 -5.6735 24 6 -2.4696 -3.9847 -6.4292 25 7 -2.8419 -3.2924 -7.4849 26 14 -3.0807 -5.7346 -6.1968 27 1 -3.9645 -6.1051 -7.3311 28 1 -3.8422 -5.8282 -4.9253 29 1 -1.9214 -6.6613 -6.1487 30 6 0.4740 -4.3845 -1.1379 31 1 -0.3633 0.0050 1.0277 32 1 -0.3633 0.8876 -0.5181 33 1 -0.3633 -0.8924 -0.5094 34 1 1.6936 2.1313 -0.0006 35 1 4.5034 2.6420 -0.8974 36 1 4.5938 -2.7568 -1.0290 37 1 5.3586 -2.2889 0.5085 38 1 3.8410 -3.2189 0.5163 39 1 2.3579 -2.9949 -2.8919 40 1 1.8602 -1.4230 -2.2286 41 1 0.6432 -2.1019 -4.3663 42 1 -0.4358 -1.7570 -2.9869 43 1 -2.2498 -5.7394 -1.6147 44 1 -0.7876 -6.3548 -2.4549 45 1 -3.1655 -4.8689 -3.5898 46 1 -2.1001 -6.0579 -4.3876 47 1 -2.5850 -2.3609 -7.5695 48 1 0.1632 -4.6333 -0.1232 49 1 1.1234 -5.1655 -1.5335 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036902203.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:52 Heat of formation + Delta-G solvation = -1.622345 kcal Electronic energy + Delta-G solvation = -31746.020650 eV Core-core repulsion = 27674.414999 eV Total energy + Delta-G solvation = -4071.605652 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.40247 -40.06219 -38.61167 -37.39316 -35.69202 -34.61862 -33.00527 -32.12632 -31.76583 -30.35528 -28.61636 -28.35796 -27.86835 -25.27573 -23.99583 -23.05270 -22.72110 -21.63732 -20.64560 -20.25304 -19.40529 -18.69013 -17.69964 -17.51660 -16.97298 -16.44876 -15.92468 -15.36780 -15.15573 -14.89605 -14.52578 -14.46345 -14.08445 -13.93599 -13.67377 -13.56598 -13.39377 -13.15241 -13.02651 -12.90936 -12.76752 -12.58807 -12.38777 -12.26642 -12.18989 -11.97783 -11.93287 -11.48646 -11.21589 -10.96698 -10.89626 -10.64829 -10.29811 -10.08492 -9.90580 -9.82178 -9.65433 -9.23391 -9.09908 -9.07566 -8.76421 -8.72865 -7.05791 -6.35656 -3.33790 0.45525 0.80956 2.35711 2.75648 3.08968 3.32696 3.38388 3.44981 3.67111 4.11694 4.14318 4.27056 4.56952 4.63813 4.69658 4.83157 4.86431 4.98261 5.00568 5.09338 5.14016 5.21826 5.23244 5.27372 5.30918 5.33488 5.41828 5.48540 5.56519 5.56953 5.64704 5.73316 5.77034 5.80978 5.84796 5.90894 5.97533 6.03633 6.08915 6.15223 6.20550 6.36271 6.40299 6.58764 6.71382 6.82941 7.09682 7.21598 7.53831 7.67487 7.95442 8.27473 8.96582 9.51526 10.20106 11.14596 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017058 B = 0.003126 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.022926 B = 8956.212949 C = 9696.538948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.013 3.987 3 C -0.194 4.194 4 C 0.330 3.670 5 O -0.481 6.481 6 N -0.506 5.506 7 C 0.192 3.808 8 C -0.112 4.112 9 C -0.185 4.185 10 C 0.572 3.428 11 O -0.534 6.534 12 N -0.597 5.597 13 C 0.113 3.887 14 C -0.126 4.126 15 C 0.168 3.832 16 H 0.026 0.974 17 C -0.126 4.126 18 H 0.084 0.916 19 C -0.119 4.119 20 C 0.109 3.891 21 N -0.604 5.604 22 C -0.319 4.319 23 H 0.076 0.924 24 C -0.019 4.019 25 N -0.931 5.931 26 Si 1.072 2.928 27 H -0.302 1.302 28 H -0.284 1.284 29 H -0.297 1.297 30 C 0.126 3.874 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.147 0.853 35 H 0.403 0.597 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.048 0.952 46 H 0.031 0.969 47 H 0.261 0.739 48 H 0.094 0.906 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.458 5.246 14.828 19.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.005 3.995 3 C -0.216 4.216 4 C 0.151 3.849 5 O -0.289 6.289 6 N -0.226 5.226 7 C 0.053 3.947 8 C -0.169 4.169 9 C -0.190 4.190 10 C 0.358 3.642 11 O -0.411 6.411 12 N -0.330 5.330 13 C -0.011 4.011 14 C -0.165 4.165 15 C 0.060 3.940 16 H 0.043 0.957 17 C -0.146 4.146 18 H 0.102 0.898 19 C -0.158 4.158 20 C -0.015 4.015 21 N -0.330 5.330 22 C -0.446 4.446 23 H 0.094 0.906 24 C -0.218 4.218 25 N -0.572 5.572 26 Si 0.906 3.094 27 H -0.231 1.231 28 H -0.211 1.211 29 H -0.225 1.225 30 C 0.005 3.995 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.165 0.835 35 H 0.262 0.738 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.066 0.934 46 H 0.048 0.952 47 H 0.071 0.929 48 H 0.112 0.888 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.260 3.848 15.133 19.251 hybrid contribution 0.174 1.593 0.093 1.606 sum 11.433 5.441 15.226 19.803 Atomic orbital electron populations 1.20965 0.89145 1.04305 1.03775 1.20221 0.97072 0.90792 0.91449 1.21887 0.93717 0.99401 1.06546 1.19228 0.87009 0.85026 0.93591 1.84723 1.76007 1.34043 1.34081 1.66981 1.41805 0.97801 1.16016 1.21004 0.89060 0.93187 0.91417 1.20865 1.00546 0.91703 1.03834 1.20660 0.94899 0.94450 1.09010 1.17957 0.78452 0.83847 0.83968 1.90800 1.54639 1.64980 1.30700 1.48305 1.56699 1.22286 1.05662 1.21795 0.98059 0.97535 0.83669 1.21831 0.96441 0.99266 0.98960 1.20673 0.90878 0.93844 0.88642 0.95664 1.22728 0.96070 0.98859 0.96976 0.89805 1.22412 0.99454 0.96456 0.97465 1.22426 0.95677 0.91443 0.91940 1.44493 1.24189 1.40112 1.24188 1.20098 1.29926 1.01135 0.93490 0.90612 1.25971 0.97467 1.05884 0.92526 1.70898 1.47595 1.10158 1.28536 0.83821 0.75847 0.75586 0.74111 1.23076 1.21149 1.22528 1.21641 0.92645 0.83603 1.01647 0.89556 0.90004 0.90411 0.83536 0.73825 0.89510 0.89609 0.90098 0.91268 0.90593 0.90195 0.91500 0.91145 0.91277 0.93369 0.95150 0.92908 0.88757 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 9.69 36.00 0.35 -0.89 16 2 C 0.01 0.14 5.66 -103.96 -0.59 -0.45 16 3 C -0.19 -1.90 9.73 -39.34 -0.38 -2.29 16 4 C 0.33 3.58 7.74 -16.96 -0.13 3.45 16 5 O -0.48 -4.29 13.55 -18.19 -0.25 -4.53 16 6 N -0.51 -6.23 10.28 -9.20 -0.09 -6.32 16 7 C 0.19 2.29 6.82 -82.18 -0.56 1.73 16 8 C -0.11 -1.11 9.78 36.01 0.35 -0.75 16 9 C -0.18 -2.28 3.63 -104.82 -0.38 -2.66 16 10 C 0.57 7.77 4.18 -12.43 -0.05 7.71 16 11 O -0.53 -8.78 16.45 5.30 0.09 -8.70 16 12 N -0.60 -7.64 3.01 -173.72 -0.52 -8.16 16 13 C 0.11 1.38 6.22 -3.49 -0.02 1.36 16 14 C -0.13 -1.97 5.40 -26.99 -0.15 -2.11 16 15 C 0.17 3.02 2.57 -67.83 -0.17 2.84 16 16 H 0.03 0.47 7.93 -51.93 -0.41 0.06 16 17 C -0.13 -1.91 2.88 -89.20 -0.26 -2.17 16 18 H 0.08 1.36 8.13 -51.93 -0.42 0.93 16 19 C -0.12 -1.84 6.53 -25.14 -0.16 -2.00 16 20 C 0.11 2.24 4.65 -1.92 -0.01 2.23 16 21 N -0.60 -13.77 3.22 -162.93 -0.52 -14.30 16 22 C -0.32 -8.62 10.21 -15.06 -0.15 -8.78 16 23 H 0.08 2.14 7.47 -52.49 -0.39 1.75 16 24 C -0.02 -0.54 5.50 -17.43 -0.10 -0.64 16 25 N -0.93 -28.52 13.70 55.49 0.76 -27.76 16 26 Si 1.07 26.14 24.62 -169.99 -4.18 21.96 16 27 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 28 H -0.28 -6.29 5.31 56.52 0.30 -5.99 16 29 H -0.30 -7.00 6.90 56.52 0.39 -6.61 16 30 C 0.13 1.64 5.93 -3.78 -0.02 1.62 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 33 H 0.08 0.89 7.18 -51.93 -0.37 0.52 16 34 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.40 1.54 9.06 45.56 0.41 1.95 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.85 7.06 -51.93 -0.37 0.48 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.87 6.05 -51.93 -0.31 0.55 16 41 H 0.08 1.35 7.76 -51.93 -0.40 0.94 16 42 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 45 H 0.05 1.04 6.85 -51.93 -0.36 0.68 16 46 H 0.03 0.66 3.99 -51.93 -0.21 0.46 16 47 H 0.26 7.89 8.73 -40.82 -0.36 7.53 16 48 H 0.09 1.24 7.00 -51.93 -0.36 0.88 16 49 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 LS Contribution 379.70 15.07 5.72 5.72 Total: -1.00 -34.34 379.70 -8.12 -42.46 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.68 Total: 1.42 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -2.44 Total: -1.79 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -0.38 Total: -56.54 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.16 Total: -13.23 kcal Atomic # 14 Polarization: 26.14 SS G_CDS: -4.18 Total: 21.96 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.34 -8.12 -42.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036902203.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.842 kcal (2) G-P(sol) polarization free energy of solvation -34.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds