Wall clock time and date at job start Wed Apr 1 2020 03:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37995 * 120.82711 * 2 1 4 4 C 1.39125 * 119.26880 * 180.27787 * 3 2 1 5 5 O 1.35499 * 119.52268 * 179.69716 * 4 3 2 6 6 N 1.32439 * 120.94550 * 359.71112 * 4 3 2 7 7 C 1.31631 * 121.80213 * 0.02562 * 6 4 3 8 8 C 1.50700 * 119.68617 * 179.97438 * 7 6 4 9 9 C 1.39563 * 120.62746 * 0.02562 * 7 6 4 10 10 C 1.47617 * 120.49868 * 179.97438 * 9 7 6 11 11 O 1.21574 * 120.00033 * 89.99730 * 10 9 7 12 12 N 1.34775 * 119.99983 * 269.99592 * 10 9 7 13 13 C 1.46608 * 119.68382 * 0.02562 * 12 10 9 14 14 C 1.53946 * 110.57689 * 227.84639 * 13 12 10 15 15 C 1.51519 * 107.34807 * 308.94813 * 14 13 12 16 16 H 1.09004 * 108.80263 * 306.55987 * 15 14 13 17 17 C 1.55634 * 107.82041 * 65.01037 * 15 14 13 18 18 H 1.08998 * 111.67941 * 51.36547 * 17 15 14 19 19 C 1.53738 * 100.11633 * 169.28212 * 17 15 14 20 20 C 1.55284 * 101.84438 * 320.76407 * 19 17 15 21 21 N 1.45467 * 117.35122 * 181.91227 * 15 14 13 22 22 C 1.36932 * 126.40512 * 30.64859 * 21 15 14 23 23 H 1.07994 * 120.00573 * 340.29990 * 22 21 15 24 24 C 1.38815 * 119.99681 * 160.28972 * 22 21 15 25 25 N 1.31620 * 119.99632 * 173.44341 * 24 22 21 26 26 Si 1.86803 * 120.00231 * 353.45085 * 24 22 21 27 27 H 1.48500 * 109.47136 * 179.97438 * 26 24 22 28 28 H 1.48500 * 109.47052 * 59.99541 * 26 24 22 29 29 H 1.48494 * 109.46814 * 299.99903 * 26 24 22 30 30 C 1.47646 * 119.53709 * 180.34969 * 12 10 9 31 31 H 1.09002 * 109.46790 * 270.27688 * 1 2 3 32 32 H 1.09003 * 109.46979 * 30.27193 * 1 2 3 33 33 H 1.08993 * 109.47210 * 150.28012 * 1 2 3 34 34 H 1.07999 * 120.36185 * 359.96560 * 3 2 1 35 35 H 0.96697 * 113.99541 * 270.01130 * 5 4 3 36 36 H 1.09001 * 109.47389 * 270.02716 * 8 7 6 37 37 H 1.08996 * 109.47364 * 30.02433 * 8 7 6 38 38 H 1.08997 * 109.47104 * 150.02495 * 8 7 6 39 39 H 1.08998 * 109.25193 * 107.56145 * 13 12 10 40 40 H 1.08999 * 109.25470 * 348.13136 * 13 12 10 41 41 H 1.08996 * 109.88002 * 189.48802 * 14 13 12 42 42 H 1.08999 * 109.88304 * 68.40986 * 14 13 12 43 43 H 1.09003 * 110.95266 * 202.62157 * 19 17 15 44 44 H 1.09000 * 110.95194 * 78.90505 * 19 17 15 45 45 H 1.09003 * 109.91835 * 263.13041 * 20 19 17 46 46 H 1.09001 * 110.08987 * 141.92281 * 20 19 17 47 47 H 0.96997 * 120.01059 * 354.95694 * 25 24 22 48 48 H 1.09005 * 110.40415 * 8.46580 * 30 12 10 49 49 H 1.08998 * 109.49940 * 247.04723 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1472 -0.0059 5 8 4.3043 2.3076 -0.0121 6 7 4.2547 -0.0068 -0.0057 7 6 3.6204 -1.1602 -0.0006 8 6 4.4079 -2.4451 -0.0012 9 6 2.2255 -1.2044 0.0045 10 6 1.5170 -2.4995 0.0097 11 8 1.2291 -3.0306 1.0647 12 7 1.1894 -3.0931 -1.1551 13 6 1.5405 -2.4467 -2.4233 14 6 0.3303 -2.4285 -3.3746 15 6 -0.2108 -3.8420 -3.4444 16 1 0.6024 -4.5167 -3.7121 17 6 -0.7470 -4.2171 -2.0323 18 1 -1.4313 -3.4609 -1.6475 19 6 -1.4868 -5.5237 -2.3626 20 6 -2.1327 -5.1864 -3.7338 21 7 -1.3430 -4.0815 -4.3259 22 6 -1.6231 -3.4143 -5.4884 23 1 -1.1855 -2.4445 -5.6735 24 6 -2.4696 -3.9847 -6.4292 25 7 -2.8419 -3.2924 -7.4849 26 14 -3.0807 -5.7346 -6.1968 27 1 -3.9645 -6.1051 -7.3311 28 1 -3.8422 -5.8282 -4.9253 29 1 -1.9214 -6.6613 -6.1487 30 6 0.4740 -4.3845 -1.1379 31 1 -0.3633 0.0050 1.0277 32 1 -0.3633 0.8876 -0.5181 33 1 -0.3633 -0.8924 -0.5094 34 1 1.6936 2.1313 -0.0006 35 1 4.5034 2.6420 -0.8974 36 1 4.5938 -2.7568 -1.0290 37 1 5.3586 -2.2889 0.5085 38 1 3.8410 -3.2189 0.5163 39 1 2.3579 -2.9949 -2.8919 40 1 1.8602 -1.4230 -2.2286 41 1 0.6432 -2.1019 -4.3663 42 1 -0.4358 -1.7570 -2.9869 43 1 -2.2498 -5.7394 -1.6147 44 1 -0.7876 -6.3548 -2.4549 45 1 -3.1655 -4.8689 -3.5898 46 1 -2.1001 -6.0579 -4.3876 47 1 -2.5850 -2.3609 -7.5695 48 1 0.1632 -4.6333 -0.1232 49 1 1.1234 -5.1655 -1.5335 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036902203.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:51 Heat of formation + Delta-G solvation = -28.253064 kcal Electronic energy + Delta-G solvation = -31747.175445 eV Core-core repulsion = 27674.414999 eV Total energy + Delta-G solvation = -4072.760446 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.32968 -41.13774 -39.84071 -38.18381 -37.00803 -35.43754 -34.78121 -33.18924 -33.06535 -31.83880 -29.92493 -29.14526 -28.79987 -26.66336 -25.37158 -24.23668 -23.95700 -22.43714 -22.19217 -21.47300 -20.60911 -19.49000 -19.33742 -18.40035 -18.28014 -17.48759 -16.96744 -16.72050 -16.65544 -16.03030 -15.72466 -15.52509 -15.27590 -14.92230 -14.79047 -14.68918 -14.58505 -14.37362 -14.14014 -14.10965 -13.85853 -13.67405 -13.44898 -13.36903 -13.16953 -12.96289 -12.93906 -12.68999 -12.66666 -12.45726 -12.24376 -12.21752 -11.60824 -11.41120 -11.26464 -11.17654 -10.96506 -10.68411 -10.63346 -10.55321 -9.90547 -9.83197 -9.00781 -8.59063 -5.48433 -0.36673 -0.00273 1.31887 1.42996 1.51142 1.72952 1.77011 2.30210 2.54158 2.57666 3.10610 3.20724 3.27275 3.34753 3.44224 3.65227 3.73485 3.86378 3.92701 4.01620 4.06313 4.12328 4.21101 4.29797 4.34818 4.37491 4.43928 4.47838 4.53884 4.56947 4.60195 4.66711 4.76182 4.76845 4.81296 4.83185 4.88788 4.91959 4.97895 5.04594 5.05230 5.11626 5.29319 5.36122 5.39280 5.48978 5.66551 6.15370 6.16655 6.51937 6.76139 6.84303 6.91330 7.50396 8.17662 8.93226 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017058 B = 0.003126 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.022926 B = 8956.212949 C = 9696.538948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.008 3.992 3 C -0.190 4.190 4 C 0.329 3.671 5 O -0.487 6.487 6 N -0.526 5.526 7 C 0.186 3.814 8 C -0.110 4.110 9 C -0.204 4.204 10 C 0.580 3.420 11 O -0.564 6.564 12 N -0.595 5.595 13 C 0.126 3.874 14 C -0.119 4.119 15 C 0.154 3.846 16 H 0.031 0.969 17 C -0.110 4.110 18 H 0.072 0.928 19 C -0.107 4.107 20 C 0.096 3.904 21 N -0.625 5.625 22 C -0.296 4.296 23 H 0.049 0.951 24 C -0.081 4.081 25 N -0.972 5.972 26 Si 1.108 2.892 27 H -0.319 1.319 28 H -0.250 1.250 29 H -0.283 1.283 30 C 0.132 3.868 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.172 0.828 35 H 0.425 0.575 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.035 0.965 46 H 0.027 0.973 47 H 0.247 0.753 48 H 0.098 0.902 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.642 4.629 17.038 21.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.000 4.000 3 C -0.211 4.211 4 C 0.150 3.850 5 O -0.298 6.298 6 N -0.247 5.247 7 C 0.048 3.952 8 C -0.167 4.167 9 C -0.209 4.209 10 C 0.368 3.632 11 O -0.444 6.444 12 N -0.326 5.326 13 C 0.003 3.997 14 C -0.158 4.158 15 C 0.048 3.952 16 H 0.048 0.952 17 C -0.130 4.130 18 H 0.090 0.910 19 C -0.145 4.145 20 C -0.027 4.027 21 N -0.351 5.351 22 C -0.425 4.425 23 H 0.067 0.933 24 C -0.273 4.273 25 N -0.617 5.617 26 Si 0.937 3.063 27 H -0.248 1.248 28 H -0.175 1.175 29 H -0.211 1.211 30 C 0.010 3.990 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.190 0.810 35 H 0.287 0.713 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.115 0.885 44 H 0.111 0.889 45 H 0.053 0.947 46 H 0.044 0.956 47 H 0.056 0.944 48 H 0.116 0.884 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.483 3.245 17.379 21.642 hybrid contribution -0.104 1.949 -0.562 2.032 sum 12.379 5.195 16.817 21.518 Atomic orbital electron populations 1.20970 0.88596 1.04335 1.04045 1.20406 0.97551 0.90875 0.91196 1.22095 0.93398 1.00006 1.05552 1.19453 0.87581 0.85183 0.92742 1.84677 1.75789 1.33212 1.36083 1.67025 1.42339 0.98326 1.17001 1.21246 0.89093 0.93776 0.91121 1.20892 1.00421 0.90684 1.04708 1.20636 0.95215 0.94194 1.10891 1.18052 0.77809 0.83906 0.83442 1.90781 1.56010 1.65864 1.31696 1.48292 1.56431 1.22224 1.05618 1.21680 0.96576 0.98686 0.82749 1.21721 0.97481 0.97717 0.98899 1.20959 0.89739 0.95160 0.89366 0.95150 1.22573 0.96659 0.98544 0.95232 0.90976 1.22420 1.00347 0.96967 0.94792 1.22571 0.95359 0.90196 0.94611 1.44617 1.26384 1.40434 1.23711 1.19996 1.27655 1.00009 0.94821 0.93282 1.27146 0.98663 1.08950 0.92536 1.70999 1.50305 1.09723 1.30643 0.83431 0.76051 0.71956 0.74909 1.24837 1.17494 1.21096 1.21630 0.91903 0.84119 1.01327 0.89157 0.88077 0.92220 0.81026 0.71294 0.88080 0.88993 0.90827 0.89569 0.89431 0.92068 0.92672 0.88462 0.88921 0.94716 0.95569 0.94435 0.88359 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.24 9.69 71.23 0.69 -1.55 16 2 C 0.01 0.15 5.66 -19.43 -0.11 0.04 16 3 C -0.19 -3.27 9.73 22.43 0.22 -3.06 16 4 C 0.33 6.45 7.74 84.81 0.66 7.11 16 5 O -0.49 -7.54 13.55 -88.00 -1.19 -8.74 16 6 N -0.53 -12.03 10.28 -295.89 -3.04 -15.08 16 7 C 0.19 4.13 6.82 42.91 0.29 4.43 16 8 C -0.11 -1.97 9.78 71.24 0.70 -1.28 16 9 C -0.20 -4.70 3.63 -19.99 -0.07 -4.78 16 10 C 0.58 14.78 4.18 86.72 0.36 15.15 16 11 O -0.56 -17.73 16.45 -3.95 -0.06 -17.80 16 12 N -0.59 -13.89 3.01 -821.80 -2.47 -16.36 16 13 C 0.13 2.86 6.22 86.68 0.54 3.40 16 14 C -0.12 -3.65 5.40 30.43 0.16 -3.49 16 15 C 0.15 5.34 2.57 45.61 0.12 5.45 16 16 H 0.03 1.06 7.93 -2.38 -0.02 1.04 16 17 C -0.11 -3.06 2.88 -9.87 -0.03 -3.09 16 18 H 0.07 2.20 8.13 -2.39 -0.02 2.18 16 19 C -0.11 -2.91 6.53 31.63 0.21 -2.71 16 20 C 0.10 3.75 4.65 86.85 0.40 4.16 16 21 N -0.63 -28.15 3.22 -669.39 -2.16 -30.30 16 22 C -0.30 -16.34 10.21 84.03 0.86 -15.49 16 23 H 0.05 2.91 7.47 -2.91 -0.02 2.89 16 24 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 25 N -0.97 -61.88 13.70 21.65 0.30 -61.59 16 26 Si 1.11 52.89 24.62 68.60 1.69 54.58 16 27 H -0.32 -15.96 7.11 99.48 0.71 -15.25 16 28 H -0.25 -10.44 5.31 99.48 0.53 -9.91 16 29 H -0.28 -12.74 6.90 99.48 0.69 -12.05 16 30 C 0.13 3.02 5.93 85.92 0.51 3.53 16 31 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.10 1.40 8.10 -2.39 -0.02 1.38 16 33 H 0.06 1.31 7.18 -2.39 -0.02 1.29 16 34 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16 35 H 0.42 2.20 9.06 -74.06 -0.67 1.53 16 36 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 38 H 0.07 1.43 7.06 -2.39 -0.02 1.41 16 39 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.09 1.83 6.05 -2.39 -0.01 1.82 16 41 H 0.06 2.10 7.76 -2.39 -0.02 2.08 16 42 H 0.05 1.80 8.13 -2.39 -0.02 1.78 16 43 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.09 2.14 8.11 -2.39 -0.02 2.12 16 45 H 0.03 1.44 6.85 -2.39 -0.02 1.42 16 46 H 0.03 1.07 3.99 -2.39 -0.01 1.07 16 47 H 0.25 15.72 8.73 -92.71 -0.81 14.91 16 48 H 0.10 2.28 7.00 -2.38 -0.02 2.26 16 49 H 0.09 1.83 8.08 -2.39 -0.02 1.81 16 Total: -1.00 -76.68 379.70 -0.90 -77.58 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.07 Total: 14.11 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: 5.97 Total: 3.59 kcal Atomic # 7 Polarization: -115.96 SS G_CDS: -7.37 Total: -123.33 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -1.26 Total: -26.53 kcal Atomic # 14 Polarization: 52.89 SS G_CDS: 1.69 Total: 54.58 kcal Total: -76.68 -0.90 -77.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036902203.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.325 kcal (2) G-P(sol) polarization free energy of solvation -76.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds