Wall clock time and date at job start Wed Apr 1 2020 03:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37994 * 120.81821 * 2 1 4 4 C 1.39127 * 119.25993 * 180.02562 * 3 2 1 5 5 O 1.35496 * 119.52400 * 180.02562 * 4 3 2 6 6 N 1.32438 * 120.95472 * 0.02628 * 4 3 2 7 7 C 1.31644 * 121.79263 * 359.97438 * 6 4 3 8 8 C 1.50706 * 119.68052 * 179.97438 * 7 6 4 9 9 C 1.39552 * 120.62964 * 0.27263 * 7 6 4 10 10 C 1.47619 * 120.49747 * 179.72261 * 9 7 6 11 11 O 1.21590 * 119.99595 * 90.00384 * 10 9 7 12 12 N 1.34768 * 120.00254 * 270.00205 * 10 9 7 13 13 C 1.47151 * 121.01013 * 359.71826 * 12 10 9 14 14 C 1.52274 * 107.59977 * 122.91375 * 13 12 10 15 15 C 1.51142 * 111.74530 * 53.99069 * 14 13 12 16 16 H 1.08998 * 108.46371 * 185.28491 * 15 14 13 17 17 C 1.53995 * 113.17137 * 305.53354 * 15 14 13 18 18 H 1.09004 * 112.71885 * 284.12306 * 17 15 14 19 19 C 1.56017 * 100.38898 * 162.97621 * 17 15 14 20 20 C 1.54500 * 102.61730 * 323.13105 * 19 17 15 21 21 N 1.46469 * 112.68033 * 65.33738 * 15 14 13 22 22 C 1.36937 * 126.05366 * 29.82277 * 21 15 14 23 23 H 1.07999 * 120.00239 * 359.97438 * 22 21 15 24 24 C 1.38811 * 119.99820 * 180.02562 * 22 21 15 25 25 N 1.31619 * 120.00030 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99905 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47091 * 59.99618 * 26 24 22 28 28 H 1.48504 * 109.47068 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.46833 * 299.99747 * 26 24 22 30 30 C 1.46529 * 121.01092 * 180.02562 * 12 10 9 31 31 H 1.08996 * 109.47619 * 89.99738 * 1 2 3 32 32 H 1.08996 * 109.47065 * 209.99696 * 1 2 3 33 33 H 1.08996 * 109.47244 * 329.99324 * 1 2 3 34 34 H 1.07992 * 120.36840 * 0.04973 * 3 2 1 35 35 H 0.96708 * 114.00574 * 270.02567 * 5 4 3 36 36 H 1.08999 * 109.47015 * 90.00074 * 8 7 6 37 37 H 1.09000 * 109.46646 * 209.99227 * 8 7 6 38 38 H 1.09000 * 109.47248 * 329.99944 * 8 7 6 39 39 H 1.08994 * 109.81677 * 242.10545 * 13 12 10 40 40 H 1.08994 * 109.81414 * 3.01569 * 13 12 10 41 41 H 1.08998 * 108.29094 * 293.73252 * 14 13 12 42 42 H 1.09000 * 109.32026 * 174.92896 * 14 13 12 43 43 H 1.08994 * 110.77962 * 81.41639 * 19 17 15 44 44 H 1.09000 * 110.77914 * 204.85316 * 19 17 15 45 45 H 1.08997 * 109.90719 * 263.45292 * 20 19 17 46 46 H 1.09004 * 109.90014 * 142.21214 * 20 19 17 47 47 H 0.96999 * 120.00148 * 180.02562 * 25 24 22 48 48 H 1.08998 * 109.34796 * 355.81852 * 30 12 10 49 49 H 1.08999 * 109.34833 * 115.51753 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 -0.0005 5 8 4.3043 2.3077 0.0000 6 7 4.2548 -0.0066 -0.0016 7 6 3.6204 -1.1601 -0.0016 8 6 4.4080 -2.4450 -0.0034 9 6 2.2256 -1.2044 -0.0063 10 6 1.5172 -2.4995 -0.0125 11 8 1.2220 -3.0359 1.0380 12 7 1.1976 -3.0872 -1.1824 13 6 1.5386 -2.4547 -2.4666 14 6 2.3888 -3.4421 -3.2547 15 6 1.7077 -4.7847 -3.3893 16 1 2.3972 -5.4742 -3.8763 17 6 1.2909 -5.3910 -2.0365 18 1 2.1336 -5.8064 -1.4838 19 6 0.2671 -6.4670 -2.5140 20 6 -0.4356 -5.7631 -3.6962 21 7 0.4814 -4.7184 -4.1874 22 6 0.2308 -3.8411 -5.2086 23 1 0.9759 -3.1110 -5.4884 24 6 -0.9812 -3.8895 -5.8834 25 7 -1.8894 -4.7789 -5.5421 26 14 -1.3228 -2.6932 -7.2769 27 1 -0.3091 -2.8767 -8.3464 28 1 -2.6769 -2.9506 -7.8296 29 1 -1.2537 -1.3018 -6.7628 30 6 0.4942 -4.3722 -1.2144 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6935 2.1313 0.0008 35 1 4.5067 2.6454 -0.8833 36 1 4.5991 -2.7554 1.0238 37 1 3.8384 -3.2195 -0.5170 38 1 5.3561 -2.2893 -0.5182 39 1 0.6278 -2.2325 -3.0224 40 1 2.0976 -1.5361 -2.2891 41 1 3.3358 -3.5723 -2.7310 42 1 2.5826 -3.0382 -4.2484 43 1 0.7810 -7.3675 -2.8501 44 1 -0.4462 -6.6999 -1.7233 45 1 -1.3672 -5.3099 -3.3576 46 1 -0.6372 -6.4828 -4.4897 47 1 -2.7363 -4.8130 -6.0139 48 1 0.3743 -4.7437 -0.1967 49 1 -0.4880 -4.2350 -1.6667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036902204.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:56 Heat of formation + Delta-G solvation = -10.729040 kcal Electronic energy + Delta-G solvation = -32311.021342 eV Core-core repulsion = 28239.020795 eV Total energy + Delta-G solvation = -4072.000548 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.19507 -39.84287 -38.35121 -37.22418 -35.05637 -34.46106 -32.90912 -31.89175 -31.71464 -29.41196 -28.25756 -28.11720 -27.42365 -25.41577 -24.30975 -23.15085 -22.57743 -21.49290 -20.25166 -19.96835 -18.60622 -18.47689 -17.34148 -17.25350 -16.38452 -16.25726 -15.77044 -15.24877 -14.69232 -14.62496 -14.28273 -14.17065 -13.95985 -13.81957 -13.48540 -13.41984 -13.19068 -12.94020 -12.73298 -12.50958 -12.45539 -12.28494 -12.15712 -12.05074 -11.80039 -11.60841 -11.48221 -11.16996 -11.10183 -10.83167 -10.70633 -10.25513 -10.15450 -9.98367 -9.95757 -9.75007 -9.68646 -9.65174 -9.46316 -8.91355 -8.66485 -8.29524 -6.88576 -5.78196 -3.11144 0.61489 0.95718 2.62232 3.01481 3.31476 3.32851 3.38229 3.40088 3.47906 4.26806 4.33583 4.42047 4.49770 4.83808 4.97934 5.10017 5.12958 5.21062 5.28810 5.29419 5.37641 5.42548 5.46297 5.48296 5.50818 5.54286 5.71167 5.72582 5.78310 5.82725 5.92035 5.99001 6.00422 6.06343 6.21422 6.23866 6.24816 6.29287 6.37695 6.48977 6.63041 6.70992 6.82603 6.87035 7.21180 7.49547 7.55818 7.60633 7.69376 7.75382 8.18215 8.24603 9.14074 9.76294 10.43868 11.33654 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012193 B = 0.003938 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.924622 B = 7108.335780 C = 8139.532328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.011 3.989 3 C -0.195 4.195 4 C 0.327 3.673 5 O -0.482 6.482 6 N -0.506 5.506 7 C 0.193 3.807 8 C -0.111 4.111 9 C -0.179 4.179 10 C 0.570 3.430 11 O -0.542 6.542 12 N -0.589 5.589 13 C 0.116 3.884 14 C -0.128 4.128 15 C 0.171 3.829 16 H 0.020 0.980 17 C -0.116 4.116 18 H 0.078 0.922 19 C -0.142 4.142 20 C 0.177 3.823 21 N -0.594 5.594 22 C -0.226 4.226 23 H 0.077 0.923 24 C -0.004 4.004 25 N -0.919 5.919 26 Si 0.906 3.094 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 C 0.125 3.875 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.145 0.855 35 H 0.402 0.598 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.076 0.924 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.047 0.953 46 H 0.042 0.958 47 H 0.253 0.747 48 H 0.081 0.919 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.228 7.841 9.003 14.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.003 3.997 3 C -0.216 4.216 4 C 0.148 3.852 5 O -0.289 6.289 6 N -0.226 5.226 7 C 0.054 3.946 8 C -0.169 4.169 9 C -0.184 4.184 10 C 0.356 3.644 11 O -0.421 6.421 12 N -0.320 5.320 13 C -0.006 4.006 14 C -0.167 4.167 15 C 0.064 3.936 16 H 0.037 0.963 17 C -0.136 4.136 18 H 0.096 0.904 19 C -0.181 4.181 20 C 0.052 3.948 21 N -0.320 5.320 22 C -0.354 4.354 23 H 0.095 0.905 24 C -0.201 4.201 25 N -0.566 5.566 26 Si 0.737 3.263 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.213 1.213 30 C 0.003 3.997 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.163 0.837 35 H 0.260 0.740 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.063 0.937 48 H 0.099 0.901 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.728 7.618 9.971 15.285 hybrid contribution -0.982 0.877 -1.418 1.934 sum 7.746 8.495 8.554 14.329 Atomic orbital electron populations 1.20955 0.89226 1.04094 1.03918 1.20223 0.97078 0.90826 0.91587 1.21855 0.93707 0.99310 1.06778 1.19209 0.87012 0.85009 0.93962 1.84722 1.76025 1.34100 1.34067 1.66977 1.41823 0.97794 1.16035 1.20999 0.89138 0.93107 0.91365 1.20874 1.00399 0.91699 1.03888 1.20685 0.94863 0.94576 1.08254 1.17860 0.78728 0.83939 0.83883 1.90787 1.55211 1.64819 1.31240 1.48107 1.56391 1.21886 1.05578 1.21622 1.01058 0.94798 0.83147 1.21472 0.97706 0.97250 1.00311 1.20252 0.90041 0.93362 0.89991 0.96276 1.22755 0.97972 0.96311 0.96585 0.90360 1.23131 0.97891 0.97343 0.99688 1.21244 0.91978 0.89999 0.91571 1.44320 1.12836 1.37983 1.36849 1.18883 0.99510 1.09745 1.07303 0.90481 1.24752 0.96685 0.99034 0.99627 1.69935 1.07272 1.36417 1.42958 0.86300 0.77268 0.80506 0.82266 1.21236 1.21653 1.21288 1.21639 0.95722 0.81666 1.00695 0.89362 0.90340 0.90296 0.83692 0.73988 0.89598 0.90067 0.89671 0.89063 0.91498 0.92855 0.90526 0.92281 0.91952 0.93493 0.93983 0.93710 0.90056 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.39 9.68 36.01 0.35 -1.04 16 2 C 0.01 0.13 5.95 -103.95 -0.62 -0.48 16 3 C -0.20 -2.15 9.73 -39.34 -0.38 -2.53 16 4 C 0.33 3.94 7.74 -16.96 -0.13 3.81 16 5 O -0.48 -4.78 13.55 -18.18 -0.25 -5.02 16 6 N -0.51 -6.94 10.29 -9.20 -0.09 -7.03 16 7 C 0.19 2.63 6.76 -82.18 -0.56 2.08 16 8 C -0.11 -1.32 9.79 36.01 0.35 -0.97 16 9 C -0.18 -2.53 3.65 -104.82 -0.38 -2.92 16 10 C 0.57 9.08 4.22 -12.44 -0.05 9.03 16 11 O -0.54 -10.16 16.53 5.29 0.09 -10.07 16 12 N -0.59 -9.28 2.93 -174.63 -0.51 -9.79 16 13 C 0.12 1.81 6.26 -4.06 -0.03 1.78 16 14 C -0.13 -2.05 5.09 -28.04 -0.14 -2.19 16 15 C 0.17 3.15 2.90 -68.36 -0.20 2.95 16 16 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 17 C -0.12 -1.90 3.87 -88.36 -0.34 -2.24 16 18 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 19 C -0.14 -2.45 6.29 -24.33 -0.15 -2.60 16 20 C 0.18 3.92 4.63 -2.74 -0.01 3.91 16 21 N -0.59 -13.38 3.12 -164.49 -0.51 -13.89 16 22 C -0.23 -5.61 9.00 -15.06 -0.14 -5.75 16 23 H 0.08 1.83 6.66 -52.49 -0.35 1.48 16 24 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 25 N -0.92 -25.31 10.38 55.49 0.58 -24.74 16 26 Si 0.91 20.78 29.55 -169.99 -5.02 15.76 16 27 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 29 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 30 C 0.12 2.08 5.46 -3.90 -0.02 2.06 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 1.01 7.20 -51.93 -0.37 0.63 16 33 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.40 1.93 9.06 45.56 0.41 2.35 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.08 1.00 6.67 -51.93 -0.35 0.65 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.66 7.48 -51.93 -0.39 1.27 16 40 H 0.07 0.94 6.32 -51.93 -0.33 0.61 16 41 H 0.05 0.75 7.76 -51.93 -0.40 0.35 16 42 H 0.08 1.28 6.97 -51.93 -0.36 0.92 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.06 0.98 7.97 -51.93 -0.41 0.57 16 45 H 0.05 1.16 6.98 -51.93 -0.36 0.80 16 46 H 0.04 1.06 7.57 -51.93 -0.39 0.67 16 47 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 48 H 0.08 1.35 6.99 -51.93 -0.36 0.99 16 49 H 0.08 1.53 6.79 -51.93 -0.35 1.18 16 LS Contribution 381.88 15.07 5.75 5.75 Total: -1.00 -31.06 381.88 -9.06 -40.12 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -6.54 Total: 4.23 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -2.55 Total: 4.69 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -0.54 Total: -55.45 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.16 Total: -15.10 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.06 -9.06 -40.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036902204.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.391 kcal (2) G-P(sol) polarization free energy of solvation -31.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds