Wall clock time and date at job start Wed Apr 1 2020 03:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37994 * 120.81821 * 2 1 4 4 C 1.39127 * 119.25993 * 180.02562 * 3 2 1 5 5 O 1.35496 * 119.52400 * 180.02562 * 4 3 2 6 6 N 1.32438 * 120.95472 * 0.02628 * 4 3 2 7 7 C 1.31644 * 121.79263 * 359.97438 * 6 4 3 8 8 C 1.50706 * 119.68052 * 179.97438 * 7 6 4 9 9 C 1.39552 * 120.62964 * 0.27263 * 7 6 4 10 10 C 1.47619 * 120.49747 * 179.72261 * 9 7 6 11 11 O 1.21590 * 119.99595 * 90.00384 * 10 9 7 12 12 N 1.34768 * 120.00254 * 270.00205 * 10 9 7 13 13 C 1.47151 * 121.01013 * 359.71826 * 12 10 9 14 14 C 1.52274 * 107.59977 * 122.91375 * 13 12 10 15 15 C 1.51142 * 111.74530 * 53.99069 * 14 13 12 16 16 H 1.08998 * 108.46371 * 185.28491 * 15 14 13 17 17 C 1.53995 * 113.17137 * 305.53354 * 15 14 13 18 18 H 1.09004 * 112.71885 * 284.12306 * 17 15 14 19 19 C 1.56017 * 100.38898 * 162.97621 * 17 15 14 20 20 C 1.54500 * 102.61730 * 323.13105 * 19 17 15 21 21 N 1.46469 * 112.68033 * 65.33738 * 15 14 13 22 22 C 1.36937 * 126.05366 * 29.82277 * 21 15 14 23 23 H 1.07999 * 120.00239 * 359.97438 * 22 21 15 24 24 C 1.38811 * 119.99820 * 180.02562 * 22 21 15 25 25 N 1.31619 * 120.00030 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99905 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47091 * 59.99618 * 26 24 22 28 28 H 1.48504 * 109.47068 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.46833 * 299.99747 * 26 24 22 30 30 C 1.46529 * 121.01092 * 180.02562 * 12 10 9 31 31 H 1.08996 * 109.47619 * 89.99738 * 1 2 3 32 32 H 1.08996 * 109.47065 * 209.99696 * 1 2 3 33 33 H 1.08996 * 109.47244 * 329.99324 * 1 2 3 34 34 H 1.07992 * 120.36840 * 0.04973 * 3 2 1 35 35 H 0.96708 * 114.00574 * 270.02567 * 5 4 3 36 36 H 1.08999 * 109.47015 * 90.00074 * 8 7 6 37 37 H 1.09000 * 109.46646 * 209.99227 * 8 7 6 38 38 H 1.09000 * 109.47248 * 329.99944 * 8 7 6 39 39 H 1.08994 * 109.81677 * 242.10545 * 13 12 10 40 40 H 1.08994 * 109.81414 * 3.01569 * 13 12 10 41 41 H 1.08998 * 108.29094 * 293.73252 * 14 13 12 42 42 H 1.09000 * 109.32026 * 174.92896 * 14 13 12 43 43 H 1.08994 * 110.77962 * 81.41639 * 19 17 15 44 44 H 1.09000 * 110.77914 * 204.85316 * 19 17 15 45 45 H 1.08997 * 109.90719 * 263.45292 * 20 19 17 46 46 H 1.09004 * 109.90014 * 142.21214 * 20 19 17 47 47 H 0.96999 * 120.00148 * 180.02562 * 25 24 22 48 48 H 1.08998 * 109.34796 * 355.81852 * 30 12 10 49 49 H 1.08999 * 109.34833 * 115.51753 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 -0.0005 5 8 4.3043 2.3077 0.0000 6 7 4.2548 -0.0066 -0.0016 7 6 3.6204 -1.1601 -0.0016 8 6 4.4080 -2.4450 -0.0034 9 6 2.2256 -1.2044 -0.0063 10 6 1.5172 -2.4995 -0.0125 11 8 1.2220 -3.0359 1.0380 12 7 1.1976 -3.0872 -1.1824 13 6 1.5386 -2.4547 -2.4666 14 6 2.3888 -3.4421 -3.2547 15 6 1.7077 -4.7847 -3.3893 16 1 2.3972 -5.4742 -3.8763 17 6 1.2909 -5.3910 -2.0365 18 1 2.1336 -5.8064 -1.4838 19 6 0.2671 -6.4670 -2.5140 20 6 -0.4356 -5.7631 -3.6962 21 7 0.4814 -4.7184 -4.1874 22 6 0.2308 -3.8411 -5.2086 23 1 0.9759 -3.1110 -5.4884 24 6 -0.9812 -3.8895 -5.8834 25 7 -1.8894 -4.7789 -5.5421 26 14 -1.3228 -2.6932 -7.2769 27 1 -0.3091 -2.8767 -8.3464 28 1 -2.6769 -2.9506 -7.8296 29 1 -1.2537 -1.3018 -6.7628 30 6 0.4942 -4.3722 -1.2144 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6935 2.1313 0.0008 35 1 4.5067 2.6454 -0.8833 36 1 4.5991 -2.7554 1.0238 37 1 3.8384 -3.2195 -0.5170 38 1 5.3561 -2.2893 -0.5182 39 1 0.6278 -2.2325 -3.0224 40 1 2.0976 -1.5361 -2.2891 41 1 3.3358 -3.5723 -2.7310 42 1 2.5826 -3.0382 -4.2484 43 1 0.7810 -7.3675 -2.8501 44 1 -0.4462 -6.6999 -1.7233 45 1 -1.3672 -5.3099 -3.3576 46 1 -0.6372 -6.4828 -4.4897 47 1 -2.7363 -4.8130 -6.0139 48 1 0.3743 -4.7437 -0.1967 49 1 -0.4880 -4.2350 -1.6667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036902204.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:55 Heat of formation + Delta-G solvation = -32.694363 kcal Electronic energy + Delta-G solvation = -32311.973830 eV Core-core repulsion = 28239.020795 eV Total energy + Delta-G solvation = -4072.953035 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.26249 -41.07338 -39.68843 -38.13288 -36.52210 -35.38947 -34.60869 -33.22493 -32.89347 -31.05161 -29.46604 -29.09772 -28.66791 -26.91631 -25.85743 -24.26823 -23.99222 -22.40966 -21.83570 -21.31052 -19.91159 -19.42603 -18.65365 -18.30388 -18.04629 -17.47383 -16.86316 -16.68591 -16.31163 -15.89042 -15.66009 -15.47062 -15.21585 -14.83711 -14.58741 -14.48891 -14.29118 -14.20823 -13.99421 -13.90262 -13.73504 -13.35576 -13.18062 -13.15459 -13.09968 -12.94111 -12.81522 -12.65119 -12.62469 -12.52379 -12.24275 -12.00711 -11.66496 -11.50478 -11.47070 -11.19675 -11.19011 -10.64232 -10.61048 -10.50346 -9.86750 -9.66109 -8.77413 -7.76302 -5.08935 -0.32576 0.03141 1.38421 1.49087 1.50766 1.56436 1.87775 2.34421 2.54489 2.57990 3.29077 3.38073 3.43094 3.48456 3.61167 3.81774 3.90655 3.97980 4.07608 4.14276 4.19249 4.24704 4.26835 4.39680 4.45493 4.52637 4.55402 4.58754 4.60057 4.61494 4.78493 4.82195 4.83387 4.87968 4.94571 4.97202 5.05805 5.09346 5.13373 5.24675 5.27358 5.39477 5.41064 5.49510 5.60442 5.73027 5.84502 6.27241 6.34666 6.55271 6.79295 6.98462 7.17992 7.87760 8.54521 9.34822 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012193 B = 0.003938 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.924622 B = 7108.335780 C = 8139.532328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.006 3.994 3 C -0.187 4.187 4 C 0.329 3.671 5 O -0.485 6.485 6 N -0.524 5.524 7 C 0.187 3.813 8 C -0.110 4.110 9 C -0.201 4.201 10 C 0.579 3.421 11 O -0.573 6.573 12 N -0.587 5.587 13 C 0.128 3.872 14 C -0.124 4.124 15 C 0.164 3.836 16 H 0.019 0.981 17 C -0.101 4.101 18 H 0.108 0.892 19 C -0.129 4.129 20 C 0.186 3.814 21 N -0.608 5.608 22 C -0.217 4.217 23 H 0.088 0.912 24 C -0.064 4.064 25 N -0.952 5.952 26 Si 0.963 3.037 27 H -0.281 1.281 28 H -0.304 1.304 29 H -0.276 1.276 30 C 0.131 3.869 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.175 0.825 35 H 0.425 0.575 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.012 0.988 46 H 0.003 0.997 47 H 0.242 0.758 48 H 0.084 0.916 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.449 9.688 9.795 17.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.002 4.002 3 C -0.208 4.208 4 C 0.150 3.850 5 O -0.296 6.296 6 N -0.245 5.245 7 C 0.049 3.951 8 C -0.167 4.167 9 C -0.207 4.207 10 C 0.367 3.633 11 O -0.453 6.453 12 N -0.317 5.317 13 C 0.006 3.994 14 C -0.162 4.162 15 C 0.058 3.942 16 H 0.037 0.963 17 C -0.121 4.121 18 H 0.126 0.874 19 C -0.168 4.168 20 C 0.061 3.939 21 N -0.333 5.333 22 C -0.346 4.346 23 H 0.106 0.894 24 C -0.257 4.257 25 N -0.601 5.601 26 Si 0.793 3.207 27 H -0.207 1.207 28 H -0.230 1.230 29 H -0.202 1.202 30 C 0.009 3.991 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.124 0.876 34 H 0.193 0.807 35 H 0.287 0.713 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.117 0.883 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.030 0.970 46 H 0.021 0.979 47 H 0.051 0.949 48 H 0.103 0.897 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.002 9.496 10.753 18.079 hybrid contribution -1.603 0.385 -1.629 2.317 sum 9.399 9.880 9.124 16.408 Atomic orbital electron populations 1.20960 0.88601 1.04309 1.04033 1.20433 0.97643 0.90884 0.91275 1.22086 0.93374 0.99878 1.05472 1.19444 0.87599 0.85177 0.92776 1.84678 1.75746 1.33089 1.36119 1.67029 1.42244 0.98254 1.16971 1.21184 0.88979 0.93775 0.91163 1.20899 1.00747 0.90845 1.04219 1.20605 0.95280 0.94014 1.10756 1.18062 0.77929 0.84201 0.83088 1.90764 1.56504 1.65826 1.32228 1.48067 1.56208 1.21542 1.05833 1.21465 0.99817 0.95560 0.82598 1.21414 0.98620 0.95694 1.00513 1.20469 0.88437 0.95003 0.90316 0.96317 1.22728 0.98306 0.95503 0.95601 0.87367 1.23003 0.98204 0.97582 0.97972 1.20962 0.91640 0.89242 0.92100 1.44541 1.14311 1.37515 1.36977 1.19262 0.99173 1.09317 1.06887 0.89424 1.25460 0.97087 1.00922 1.02256 1.70160 1.07338 1.38436 1.44206 0.85371 0.76245 0.79194 0.79876 1.20750 1.23041 1.20185 1.21459 0.94691 0.82439 1.00547 0.89246 0.92596 0.87603 0.80747 0.71319 0.89316 0.90580 0.88275 0.92022 0.89493 0.89990 0.91031 0.90787 0.90319 0.96955 0.97909 0.94910 0.89723 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 9.68 71.24 0.69 -1.84 16 2 C 0.01 0.13 5.95 -19.43 -0.12 0.01 16 3 C -0.19 -3.54 9.73 22.43 0.22 -3.32 16 4 C 0.33 6.96 7.74 84.82 0.66 7.62 16 5 O -0.49 -8.01 13.55 -87.96 -1.19 -9.20 16 6 N -0.52 -13.08 10.29 -295.89 -3.04 -16.12 16 7 C 0.19 4.74 6.76 42.91 0.29 5.03 16 8 C -0.11 -2.36 9.79 71.24 0.70 -1.66 16 9 C -0.20 -5.39 3.65 -20.00 -0.07 -5.46 16 10 C 0.58 17.91 4.22 86.72 0.37 18.28 16 11 O -0.57 -21.18 16.53 -4.00 -0.07 -21.25 16 12 N -0.59 -17.97 2.93 -824.67 -2.41 -20.38 16 13 C 0.13 3.83 6.26 86.02 0.54 4.37 16 14 C -0.12 -3.71 5.09 29.75 0.15 -3.55 16 15 C 0.16 5.84 2.90 44.73 0.13 5.97 16 16 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 17 C -0.10 -3.15 3.87 -9.33 -0.04 -3.19 16 18 H 0.11 2.83 8.14 -2.39 -0.02 2.82 16 19 C -0.13 -4.37 6.29 32.15 0.20 -4.17 16 20 C 0.19 8.56 4.63 86.71 0.40 8.96 16 21 N -0.61 -27.73 3.12 -674.33 -2.10 -29.83 16 22 C -0.22 -10.89 9.00 84.03 0.76 -10.13 16 23 H 0.09 4.12 6.66 -2.91 -0.02 4.10 16 24 C -0.06 -3.44 5.49 84.86 0.47 -2.98 16 25 N -0.95 -54.89 10.38 21.65 0.22 -54.66 16 26 Si 0.96 43.45 29.55 68.60 2.03 45.48 16 27 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 28 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 29 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 30 C 0.13 4.31 5.46 86.46 0.47 4.78 16 31 H 0.09 1.81 8.14 -2.39 -0.02 1.80 16 32 H 0.06 1.41 7.20 -2.39 -0.02 1.40 16 33 H 0.11 1.57 8.10 -2.39 -0.02 1.55 16 34 H 0.18 2.19 8.06 -2.91 -0.02 2.16 16 35 H 0.42 2.59 9.06 -74.05 -0.67 1.92 16 36 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.08 1.69 6.67 -2.39 -0.02 1.67 16 38 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.06 2.24 7.48 -2.39 -0.02 2.22 16 40 H 0.09 2.28 6.32 -2.39 -0.02 2.26 16 41 H 0.08 2.03 7.76 -2.39 -0.02 2.01 16 42 H 0.07 2.24 6.97 -2.39 -0.02 2.23 16 43 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.08 2.42 7.97 -2.39 -0.02 2.40 16 45 H 0.01 0.64 6.98 -2.39 -0.02 0.63 16 46 H 0.00 0.14 7.57 -2.38 -0.02 0.12 16 47 H 0.24 13.88 8.31 -92.71 -0.77 13.11 16 48 H 0.08 2.75 6.99 -2.39 -0.02 2.73 16 49 H 0.05 2.05 6.79 -2.39 -0.02 2.04 16 Total: -1.00 -69.36 381.88 -0.45 -69.81 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.31 Total: 17.47 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: 5.81 Total: 18.70 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -7.34 Total: -121.00 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -1.26 Total: -30.45 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -69.36 -0.45 -69.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036902204.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.113 kcal (2) G-P(sol) polarization free energy of solvation -69.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds