Wall clock time and date at job start Wed Apr 1 2020 06:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34867 * 119.09783 * 2 1 4 4 C 1.41670 * 119.33833 * 179.97438 * 3 2 1 5 5 O 1.22089 * 121.06817 * 179.97438 * 4 3 2 6 6 C 1.47094 * 117.86255 * 0.02562 * 4 3 2 7 7 C 1.47297 * 120.88161 * 179.97438 * 6 4 3 8 8 O 1.21608 * 120.00104 * 51.12523 * 7 6 4 9 9 N 1.34782 * 119.99573 * 231.13031 * 7 6 4 10 10 C 1.46945 * 120.44293 * 355.83559 * 9 7 6 11 11 C 1.54066 * 108.29923 * 125.72286 * 10 9 7 12 12 H 1.09001 * 110.52077 * 172.87211 * 11 10 9 13 13 C 1.53376 * 108.83367 * 294.50780 * 11 10 9 14 14 C 1.53001 * 109.25160 * 60.25917 * 13 11 10 15 15 C 1.53011 * 109.80261 * 60.57440 * 14 13 11 16 16 C 1.53361 * 109.27723 * 299.44145 * 15 14 13 17 17 H 1.09003 * 110.59750 * 178.09467 * 16 15 14 18 18 C 1.46944 * 120.43928 * 176.10827 * 9 7 6 19 19 N 1.47568 * 107.69903 * 51.33319 * 11 10 9 20 20 C 1.36935 * 121.61091 * 120.36978 * 19 11 10 21 21 H 1.08007 * 119.99979 * 143.72632 * 20 19 11 22 22 C 1.38805 * 120.00034 * 323.73674 * 20 19 11 23 23 N 1.31614 * 120.00259 * 352.17592 * 22 20 19 24 24 Si 1.86805 * 120.00091 * 172.18393 * 22 20 19 25 25 H 1.48495 * 109.47357 * 59.99165 * 24 22 20 26 26 H 1.48501 * 109.47018 * 179.97438 * 24 22 20 27 27 H 1.48509 * 109.46900 * 299.99528 * 24 22 20 28 28 C 1.37989 * 118.23879 * 359.97438 * 6 4 3 29 29 N 1.34349 * 120.36794 * 359.73400 * 28 6 4 30 30 C 1.46498 * 118.80287 * 180.26317 * 29 28 6 31 31 H 1.08998 * 109.47203 * 96.04079 * 1 2 3 32 32 H 1.09005 * 109.47108 * 336.04122 * 1 2 3 33 33 H 1.08998 * 109.47361 * 216.04175 * 1 2 3 34 34 H 1.07999 * 120.33510 * 0.02562 * 3 2 1 35 35 H 1.08997 * 109.62107 * 245.48533 * 10 9 7 36 36 H 1.08999 * 109.62243 * 6.04759 * 10 9 7 37 37 H 1.09002 * 109.50584 * 300.32090 * 13 11 10 38 38 H 1.08996 * 109.50123 * 180.18999 * 13 11 10 39 39 H 1.09002 * 109.41551 * 300.47336 * 14 13 11 40 40 H 1.09001 * 109.36375 * 180.64046 * 14 13 11 41 41 H 1.09001 * 109.50312 * 179.50230 * 15 14 13 42 42 H 1.09000 * 109.53435 * 59.40411 * 15 14 13 43 43 H 1.09003 * 109.62617 * 353.96332 * 18 9 7 44 44 H 1.08997 * 109.62676 * 114.53572 * 18 9 7 45 45 H 0.97002 * 120.00708 * 180.02562 * 23 22 20 46 46 H 1.07997 * 119.81431 * 180.02562 * 28 6 4 47 47 H 1.08995 * 109.47523 * 263.52712 * 30 29 28 48 48 H 1.09001 * 109.47263 * 23.53438 * 30 29 28 49 49 H 1.09004 * 109.47130 * 143.52951 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1785 0.0000 4 6 3.5795 1.1844 0.0006 5 8 4.2052 2.2328 0.0001 6 6 4.2724 -0.1131 0.0005 7 6 5.7437 -0.1845 0.0005 8 8 6.3831 0.4462 0.8204 9 7 6.3812 -0.9488 -0.9083 10 6 5.6176 -1.7855 -1.8445 11 6 6.0644 -1.4392 -3.2777 12 1 5.6135 -2.1252 -3.9947 13 6 5.6593 0.0074 -3.5867 14 6 6.3446 0.9467 -2.5922 15 6 7.8639 0.8181 -2.7202 16 6 8.2779 -0.6253 -2.4084 17 1 9.3545 -0.7493 -2.5261 18 6 7.8492 -0.9611 -0.9723 19 7 7.5374 -1.5188 -3.3200 20 6 8.1857 -2.3801 -4.1643 21 1 9.1153 -2.0845 -4.6279 22 6 7.6480 -3.6331 -4.4246 23 7 6.6018 -4.0542 -3.7461 24 14 8.4094 -4.7218 -5.7379 25 1 9.8244 -5.0043 -5.3874 26 1 7.6557 -5.9987 -5.8203 27 1 8.3534 -4.0279 -7.0497 28 6 3.5076 -1.2617 0.0005 29 7 2.1664 -1.1846 0.0059 30 6 1.3881 -2.4257 0.0116 31 1 -0.3633 -0.1081 -1.0219 32 1 -0.3633 0.9392 0.4173 33 1 -0.3634 -0.8309 0.6046 34 1 1.6136 2.1084 0.0004 35 1 5.8158 -2.8377 -1.6403 36 1 4.5527 -1.5822 -1.7321 37 1 4.5777 0.1094 -3.4978 38 1 5.9676 0.2629 -4.6005 39 1 6.0428 0.6836 -1.5784 40 1 6.0489 1.9744 -2.8031 41 1 8.3470 1.4954 -2.0160 42 1 8.1669 1.0723 -3.7359 43 1 8.2518 -0.2159 -0.2863 44 1 8.2192 -1.9499 -0.7014 45 1 6.2262 -4.9299 -3.9277 46 1 3.9900 -2.2280 0.0009 47 1 1.0926 -2.6740 -1.0077 48 1 1.9949 -3.2333 0.4210 49 1 0.4974 -2.2932 0.6259 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039661127.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:44:22 Heat of formation + Delta-G solvation = 28.447978 kcal Electronic energy + Delta-G solvation = -33171.035868 eV Core-core repulsion = 29100.734163 eV Total energy + Delta-G solvation = -4070.301705 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.37729 -40.09197 -37.93925 -37.13862 -34.01531 -33.41153 -32.92790 -32.43024 -31.62698 -30.18327 -28.49883 -27.05162 -26.60074 -25.43110 -24.30109 -23.27943 -22.01563 -21.38442 -20.97240 -19.77601 -18.30374 -17.74102 -17.46054 -16.54942 -16.19603 -16.11962 -15.45444 -15.16283 -14.68789 -14.62768 -14.22156 -13.92883 -13.72838 -13.66538 -13.46578 -13.34773 -13.31054 -12.94926 -12.82549 -12.72977 -12.48588 -12.41083 -12.12632 -12.02281 -11.92517 -11.75175 -11.23042 -10.96586 -10.89589 -10.71928 -10.38412 -10.07422 -10.00966 -10.00131 -9.64523 -9.44556 -9.39590 -9.24655 -8.94601 -8.60160 -7.86778 -7.63946 -6.46132 -5.89352 -3.38930 1.04361 1.33796 2.30308 3.19906 3.33063 3.37053 3.40064 3.61113 3.95245 4.02864 4.33728 4.41745 4.50704 4.64254 4.72614 4.93108 5.02314 5.09769 5.15535 5.25857 5.30568 5.33368 5.44856 5.69588 5.79247 5.83113 5.89202 5.90548 5.95856 6.00994 6.15959 6.30745 6.40294 6.47288 6.52247 6.56153 6.60734 6.64811 6.76233 6.78434 6.79386 6.88877 7.01058 7.17655 7.23303 7.34554 7.55081 7.73649 8.13276 8.29937 8.40924 8.81407 9.13178 9.71195 10.39628 11.19196 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013576 B = 0.004354 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.001071 B = 6429.482028 C = 7554.717068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.158 3.842 3 C -0.276 4.276 4 C 0.412 3.588 5 O -0.497 6.497 6 C -0.286 4.286 7 C 0.579 3.421 8 O -0.541 6.541 9 N -0.590 5.590 10 C 0.096 3.904 11 C 0.184 3.816 12 H 0.106 0.894 13 C -0.130 4.130 14 C -0.138 4.138 15 C -0.122 4.122 16 C 0.154 3.846 17 H 0.078 0.922 18 C 0.105 3.895 19 N -0.578 5.578 20 C -0.246 4.246 21 H 0.062 0.938 22 C 0.011 3.989 23 N -0.906 5.906 24 Si 0.905 3.095 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.284 1.284 28 C 0.165 3.835 29 N -0.472 5.472 30 C 0.050 3.950 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.150 0.850 35 H 0.089 0.911 36 H 0.059 0.941 37 H 0.038 0.962 38 H 0.051 0.949 39 H 0.091 0.909 40 H 0.032 0.968 41 H 0.047 0.953 42 H 0.052 0.948 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.254 0.746 46 H 0.172 0.828 47 H 0.084 0.916 48 H 0.093 0.907 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.610 0.359 6.666 16.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.051 3.949 3 C -0.300 4.300 4 C 0.300 3.700 5 O -0.379 6.379 6 C -0.296 4.296 7 C 0.368 3.632 8 O -0.420 6.420 9 N -0.322 5.322 10 C -0.028 4.028 11 C 0.077 3.923 12 H 0.124 0.876 13 C -0.169 4.169 14 C -0.176 4.176 15 C -0.161 4.161 16 C 0.046 3.954 17 H 0.096 0.904 18 C -0.019 4.019 19 N -0.300 5.300 20 C -0.376 4.376 21 H 0.080 0.920 22 C -0.187 4.187 23 N -0.550 5.550 24 Si 0.735 3.265 25 H -0.209 1.209 26 H -0.217 1.217 27 H -0.210 1.210 28 C 0.037 3.963 29 N -0.159 5.159 30 C -0.092 4.092 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.167 0.833 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.108 0.892 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.189 0.811 47 H 0.102 0.898 48 H 0.112 0.888 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.108 0.873 7.057 16.698 hybrid contribution 0.254 -0.835 -0.882 1.241 sum -14.854 0.038 6.174 16.086 Atomic orbital electron populations 1.21170 0.88255 1.04801 1.04073 1.20231 0.94724 0.85112 0.94812 1.22169 0.96231 0.97068 1.14581 1.18104 0.88290 0.87653 0.75958 1.90783 1.70090 1.33401 1.43670 1.22488 0.94889 0.95106 1.17138 1.17256 0.85888 0.79309 0.80745 1.90746 1.67216 1.45148 1.38855 1.48174 1.07528 1.43295 1.33236 1.22728 0.93334 0.95114 0.91613 1.21019 0.85149 0.92363 0.93770 0.87607 1.22095 0.97502 0.98513 0.98771 1.22064 0.95626 0.97429 1.02459 1.21917 0.96394 0.97602 1.00169 1.21264 0.95992 0.89844 0.88304 0.90408 1.22197 0.78933 1.01400 0.99407 1.44232 1.00165 1.43250 1.42323 1.19087 1.06664 0.92816 1.19046 0.92031 1.25190 0.98456 0.96158 0.98930 1.69847 1.24624 1.19226 1.41329 0.86339 0.78813 0.79686 0.81656 1.20882 1.21688 1.21043 1.22245 0.81796 1.00208 0.92091 1.42520 1.05282 1.07046 1.61064 1.22525 0.97577 0.84505 1.04556 0.89329 0.89060 0.90226 0.83275 0.89257 0.92333 0.94314 0.93017 0.89167 0.94953 0.93447 0.92904 0.90422 0.91776 0.93643 0.81123 0.89779 0.88796 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.58 9.35 36.00 0.34 -0.24 16 2 C 0.16 1.47 6.64 -82.14 -0.55 0.93 16 3 C -0.28 -3.63 9.57 -39.47 -0.38 -4.00 16 4 C 0.41 7.62 6.96 -34.68 -0.24 7.38 16 5 O -0.50 -11.40 17.37 4.62 0.08 -11.32 16 6 C -0.29 -5.01 5.01 -102.71 -0.51 -5.53 16 7 C 0.58 12.07 4.47 -12.57 -0.06 12.01 16 8 O -0.54 -13.17 16.27 5.05 0.08 -13.09 16 9 N -0.59 -11.90 1.64 -173.27 -0.28 -12.18 16 10 C 0.10 1.86 4.84 -3.24 -0.02 1.85 16 11 C 0.18 4.06 2.59 -66.59 -0.17 3.89 16 12 H 0.11 2.58 6.32 -51.93 -0.33 2.25 16 13 C -0.13 -2.69 5.59 -26.54 -0.15 -2.84 16 14 C -0.14 -2.94 5.55 -26.72 -0.15 -3.09 16 15 C -0.12 -2.53 5.58 -26.54 -0.15 -2.67 16 16 C 0.15 3.30 3.61 -66.85 -0.24 3.06 16 17 H 0.08 1.63 8.03 -51.93 -0.42 1.21 16 18 C 0.10 2.17 5.88 -3.49 -0.02 2.15 16 19 N -0.58 -13.70 2.50 -155.15 -0.39 -14.09 16 20 C -0.25 -6.36 9.69 -15.06 -0.15 -6.50 16 21 H 0.06 1.60 7.84 -52.48 -0.41 1.19 16 22 C 0.01 0.29 5.15 -17.44 -0.09 0.20 16 23 N -0.91 -23.13 10.45 55.49 0.58 -22.55 16 24 Si 0.91 20.50 29.56 -169.99 -5.02 15.47 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 C 0.17 2.08 7.62 -16.54 -0.13 1.96 16 29 N -0.47 -4.30 2.97 -119.75 -0.36 -4.65 16 30 C 0.05 0.22 9.96 59.85 0.60 0.81 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.36 7.97 -51.93 -0.41 -0.06 16 33 H 0.08 0.20 6.01 -51.93 -0.31 -0.11 16 34 H 0.15 1.70 8.01 -52.49 -0.42 1.28 16 35 H 0.09 1.89 7.42 -51.93 -0.39 1.50 16 36 H 0.06 0.99 4.51 -51.93 -0.23 0.76 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.09 2.00 2.40 -52.42 -0.13 1.88 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.08 1.61 7.00 -51.93 -0.36 1.25 16 44 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 45 H 0.25 6.33 8.31 -40.82 -0.34 5.99 16 46 H 0.17 1.88 6.93 -52.49 -0.36 1.51 16 47 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 48 H 0.09 0.33 7.85 -51.93 -0.41 -0.08 16 49 H 0.09 0.19 5.97 -51.93 -0.31 -0.12 16 LS Contribution 369.83 15.07 5.57 5.57 Total: -1.00 -35.37 369.83 -8.80 -44.18 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -7.01 Total: 3.29 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -2.06 Total: 9.36 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.45 Total: -53.47 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: 0.16 Total: -24.40 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.37 -8.80 -44.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039661127.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.625 kcal (2) G-P(sol) polarization free energy of solvation -35.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds