Wall clock time and date at job start Wed Apr 1 2020 06:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34867 * 119.09783 * 2 1 4 4 C 1.41670 * 119.33833 * 179.97438 * 3 2 1 5 5 O 1.22089 * 121.06817 * 179.97438 * 4 3 2 6 6 C 1.47094 * 117.86255 * 0.02562 * 4 3 2 7 7 C 1.47297 * 120.88161 * 179.97438 * 6 4 3 8 8 O 1.21608 * 120.00104 * 51.12523 * 7 6 4 9 9 N 1.34782 * 119.99573 * 231.13031 * 7 6 4 10 10 C 1.46945 * 120.44293 * 355.83559 * 9 7 6 11 11 C 1.54066 * 108.29923 * 125.72286 * 10 9 7 12 12 H 1.09001 * 110.52077 * 172.87211 * 11 10 9 13 13 C 1.53376 * 108.83367 * 294.50780 * 11 10 9 14 14 C 1.53001 * 109.25160 * 60.25917 * 13 11 10 15 15 C 1.53011 * 109.80261 * 60.57440 * 14 13 11 16 16 C 1.53361 * 109.27723 * 299.44145 * 15 14 13 17 17 H 1.09003 * 110.59750 * 178.09467 * 16 15 14 18 18 C 1.46944 * 120.43928 * 176.10827 * 9 7 6 19 19 N 1.47568 * 107.69903 * 51.33319 * 11 10 9 20 20 C 1.36935 * 121.61091 * 120.36978 * 19 11 10 21 21 H 1.08007 * 119.99979 * 143.72632 * 20 19 11 22 22 C 1.38805 * 120.00034 * 323.73674 * 20 19 11 23 23 N 1.31614 * 120.00259 * 352.17592 * 22 20 19 24 24 Si 1.86805 * 120.00091 * 172.18393 * 22 20 19 25 25 H 1.48495 * 109.47357 * 59.99165 * 24 22 20 26 26 H 1.48501 * 109.47018 * 179.97438 * 24 22 20 27 27 H 1.48509 * 109.46900 * 299.99528 * 24 22 20 28 28 C 1.37989 * 118.23879 * 359.97438 * 6 4 3 29 29 N 1.34349 * 120.36794 * 359.73400 * 28 6 4 30 30 C 1.46498 * 118.80287 * 180.26317 * 29 28 6 31 31 H 1.08998 * 109.47203 * 96.04079 * 1 2 3 32 32 H 1.09005 * 109.47108 * 336.04122 * 1 2 3 33 33 H 1.08998 * 109.47361 * 216.04175 * 1 2 3 34 34 H 1.07999 * 120.33510 * 0.02562 * 3 2 1 35 35 H 1.08997 * 109.62107 * 245.48533 * 10 9 7 36 36 H 1.08999 * 109.62243 * 6.04759 * 10 9 7 37 37 H 1.09002 * 109.50584 * 300.32090 * 13 11 10 38 38 H 1.08996 * 109.50123 * 180.18999 * 13 11 10 39 39 H 1.09002 * 109.41551 * 300.47336 * 14 13 11 40 40 H 1.09001 * 109.36375 * 180.64046 * 14 13 11 41 41 H 1.09001 * 109.50312 * 179.50230 * 15 14 13 42 42 H 1.09000 * 109.53435 * 59.40411 * 15 14 13 43 43 H 1.09003 * 109.62617 * 353.96332 * 18 9 7 44 44 H 1.08997 * 109.62676 * 114.53572 * 18 9 7 45 45 H 0.97002 * 120.00708 * 180.02562 * 23 22 20 46 46 H 1.07997 * 119.81431 * 180.02562 * 28 6 4 47 47 H 1.08995 * 109.47523 * 263.52712 * 30 29 28 48 48 H 1.09001 * 109.47263 * 23.53438 * 30 29 28 49 49 H 1.09004 * 109.47130 * 143.52951 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1785 0.0000 4 6 3.5795 1.1844 0.0006 5 8 4.2052 2.2328 0.0001 6 6 4.2724 -0.1131 0.0005 7 6 5.7437 -0.1845 0.0005 8 8 6.3831 0.4462 0.8204 9 7 6.3812 -0.9488 -0.9083 10 6 5.6176 -1.7855 -1.8445 11 6 6.0644 -1.4392 -3.2777 12 1 5.6135 -2.1252 -3.9947 13 6 5.6593 0.0074 -3.5867 14 6 6.3446 0.9467 -2.5922 15 6 7.8639 0.8181 -2.7202 16 6 8.2779 -0.6253 -2.4084 17 1 9.3545 -0.7493 -2.5261 18 6 7.8492 -0.9611 -0.9723 19 7 7.5374 -1.5188 -3.3200 20 6 8.1857 -2.3801 -4.1643 21 1 9.1153 -2.0845 -4.6279 22 6 7.6480 -3.6331 -4.4246 23 7 6.6018 -4.0542 -3.7461 24 14 8.4094 -4.7218 -5.7379 25 1 9.8244 -5.0043 -5.3874 26 1 7.6557 -5.9987 -5.8203 27 1 8.3534 -4.0279 -7.0497 28 6 3.5076 -1.2617 0.0005 29 7 2.1664 -1.1846 0.0059 30 6 1.3881 -2.4257 0.0116 31 1 -0.3633 -0.1081 -1.0219 32 1 -0.3633 0.9392 0.4173 33 1 -0.3634 -0.8309 0.6046 34 1 1.6136 2.1084 0.0004 35 1 5.8158 -2.8377 -1.6403 36 1 4.5527 -1.5822 -1.7321 37 1 4.5777 0.1094 -3.4978 38 1 5.9676 0.2629 -4.6005 39 1 6.0428 0.6836 -1.5784 40 1 6.0489 1.9744 -2.8031 41 1 8.3470 1.4954 -2.0160 42 1 8.1669 1.0723 -3.7359 43 1 8.2518 -0.2159 -0.2863 44 1 8.2192 -1.9499 -0.7014 45 1 6.2262 -4.9299 -3.9277 46 1 3.9900 -2.2280 0.0009 47 1 1.0926 -2.6740 -1.0077 48 1 1.9949 -3.2333 0.4210 49 1 0.4974 -2.2932 0.6259 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039661127.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:44:21 Heat of formation + Delta-G solvation = 6.358903 kcal Electronic energy + Delta-G solvation = -33171.993722 eV Core-core repulsion = 29100.734163 eV Total energy + Delta-G solvation = -4071.259559 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.58090 -41.49938 -39.35833 -38.67509 -35.60519 -34.87699 -34.21109 -33.75433 -33.11549 -32.04404 -29.48888 -28.28075 -27.62845 -27.06824 -25.70742 -24.75535 -23.46916 -23.01863 -22.40725 -21.17544 -20.03532 -19.09871 -18.67638 -17.82241 -17.47613 -17.21901 -16.85369 -16.53985 -16.37241 -16.23921 -15.68728 -15.38836 -15.17461 -14.92841 -14.69520 -14.58625 -14.50682 -14.19818 -14.11535 -13.83180 -13.79675 -13.78149 -13.49400 -13.29227 -13.04738 -12.79808 -12.75084 -12.62184 -12.49032 -12.40310 -12.17572 -11.91385 -11.75726 -11.73229 -11.28782 -11.19180 -10.95554 -10.57113 -10.41574 -10.25876 -9.40070 -8.99784 -8.31218 -7.82587 -5.35095 -0.07116 0.33894 1.46238 1.52987 1.54021 1.59472 1.68561 2.13370 2.54692 2.69792 3.29466 3.34158 3.47992 3.52212 3.64216 3.83974 4.00772 4.11758 4.13187 4.20479 4.24771 4.28613 4.38489 4.44816 4.46650 4.50084 4.65957 4.73776 4.75463 4.77092 4.80282 4.86332 4.87610 4.90216 4.94114 5.00925 5.07012 5.16195 5.18255 5.26715 5.31486 5.44449 5.49412 5.58461 5.72020 5.73795 5.83204 5.85662 6.47035 6.55249 7.07942 7.21054 7.23153 7.80766 8.48304 9.23343 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013576 B = 0.004354 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.001071 B = 6429.482028 C = 7554.717068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.189 3.811 3 C -0.307 4.307 4 C 0.391 3.609 5 O -0.576 6.576 6 C -0.341 4.341 7 C 0.581 3.419 8 O -0.588 6.588 9 N -0.589 5.589 10 C 0.112 3.888 11 C 0.183 3.817 12 H 0.087 0.913 13 C -0.119 4.119 14 C -0.138 4.138 15 C -0.116 4.116 16 C 0.153 3.847 17 H 0.079 0.921 18 C 0.109 3.891 19 N -0.589 5.589 20 C -0.269 4.269 21 H 0.052 0.948 22 C -0.022 4.022 23 N -0.913 5.913 24 Si 0.961 3.039 25 H -0.284 1.284 26 H -0.288 1.288 27 H -0.286 1.286 28 C 0.202 3.798 29 N -0.455 5.455 30 C 0.033 3.967 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.159 0.841 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.042 0.958 39 H 0.087 0.913 40 H 0.023 0.977 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.072 0.928 44 H 0.060 0.940 45 H 0.254 0.746 46 H 0.193 0.807 47 H 0.104 0.896 48 H 0.108 0.892 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.397 -2.253 6.599 20.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.081 3.919 3 C -0.330 4.330 4 C 0.286 3.714 5 O -0.465 6.465 6 C -0.351 4.351 7 C 0.372 3.628 8 O -0.470 6.470 9 N -0.320 5.320 10 C -0.011 4.011 11 C 0.076 3.924 12 H 0.105 0.895 13 C -0.158 4.158 14 C -0.176 4.176 15 C -0.155 4.155 16 C 0.045 3.955 17 H 0.098 0.902 18 C -0.015 4.015 19 N -0.311 5.311 20 C -0.399 4.399 21 H 0.070 0.930 22 C -0.220 4.220 23 N -0.557 5.557 24 Si 0.790 3.210 25 H -0.211 1.211 26 H -0.214 1.214 27 H -0.213 1.213 28 C 0.069 3.931 29 N -0.139 5.139 30 C -0.106 4.106 31 H 0.128 0.872 32 H 0.119 0.881 33 H 0.131 0.869 34 H 0.177 0.823 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.105 0.895 40 H 0.042 0.958 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.078 0.922 45 H 0.064 0.936 46 H 0.210 0.790 47 H 0.122 0.878 48 H 0.127 0.873 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.970 -1.791 6.985 20.294 hybrid contribution 1.266 -0.181 -0.850 1.536 sum -17.703 -1.972 6.135 18.840 Atomic orbital electron populations 1.21405 0.83621 1.06915 1.06103 1.20907 0.97181 0.83770 0.90049 1.22084 0.93748 0.99487 1.17690 1.18779 0.90434 0.87067 0.75147 1.90730 1.71712 1.35355 1.48753 1.22173 0.93233 0.96736 1.22952 1.17759 0.87430 0.77969 0.79643 1.90696 1.68739 1.46863 1.40688 1.48176 1.07144 1.43447 1.33280 1.22531 0.94648 0.94083 0.89852 1.20988 0.84332 0.92314 0.94732 0.89538 1.21979 0.98325 0.97625 0.97855 1.22064 0.95940 0.97105 1.02503 1.21852 0.96213 0.97366 1.00083 1.21301 0.96049 0.89728 0.88392 0.90246 1.22045 0.79877 1.00890 0.98721 1.44343 1.00916 1.43354 1.42511 1.19222 1.06923 0.93694 1.20028 0.92999 1.25712 0.98943 0.96877 1.00430 1.69932 1.24815 1.19289 1.41693 0.85472 0.77903 0.78123 0.79458 1.21065 1.21388 1.21278 1.22421 0.83281 0.99265 0.88164 1.43123 1.04463 1.09192 1.57094 1.23098 0.98414 0.82191 1.06861 0.87167 0.88061 0.86866 0.82331 0.90433 0.89583 0.92740 0.93964 0.89513 0.95776 0.93112 0.93080 0.90954 0.92184 0.93620 0.79008 0.87775 0.87322 0.85537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.38 9.35 71.24 0.67 0.28 16 2 C 0.19 2.78 6.64 41.21 0.27 3.06 16 3 C -0.31 -7.79 9.57 22.34 0.21 -7.57 16 4 C 0.39 15.04 6.96 25.44 0.18 15.21 16 5 O -0.58 -28.56 17.37 -5.40 -0.09 -28.65 16 6 C -0.34 -12.02 5.01 -18.63 -0.09 -12.11 16 7 C 0.58 25.04 4.47 86.62 0.39 25.43 16 8 O -0.59 -30.32 16.27 -3.85 -0.06 -30.39 16 9 N -0.59 -24.20 1.64 -820.35 -1.34 -25.54 16 10 C 0.11 4.29 4.84 86.66 0.42 4.71 16 11 C 0.18 8.06 2.59 45.27 0.12 8.18 16 12 H 0.09 4.18 6.32 -2.39 -0.02 4.17 16 13 C -0.12 -4.96 5.59 30.72 0.17 -4.79 16 14 C -0.14 -6.09 5.55 30.60 0.17 -5.92 16 15 C -0.12 -4.99 5.58 30.72 0.17 -4.82 16 16 C 0.15 6.75 3.61 45.11 0.16 6.91 16 17 H 0.08 3.43 8.03 -2.39 -0.02 3.41 16 18 C 0.11 4.69 5.88 86.49 0.51 5.20 16 19 N -0.59 -28.29 2.50 -644.78 -1.61 -29.90 16 20 C -0.27 -13.98 9.69 84.03 0.81 -13.17 16 21 H 0.05 2.74 7.84 -2.91 -0.02 2.72 16 22 C -0.02 -1.10 5.15 84.86 0.44 -0.67 16 23 N -0.91 -45.84 10.45 21.65 0.23 -45.61 16 24 Si 0.96 41.76 29.56 68.60 2.03 43.79 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 27 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 28 C 0.20 4.55 7.62 84.25 0.64 5.20 16 29 N -0.46 -6.20 2.97 -532.78 -1.58 -7.78 16 30 C 0.03 0.07 9.96 127.77 1.27 1.34 16 31 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.10 0.26 7.97 -2.38 -0.02 0.24 16 33 H 0.11 -0.31 6.01 -2.39 -0.01 -0.33 16 34 H 0.16 3.56 8.01 -2.91 -0.02 3.53 16 35 H 0.08 3.20 7.42 -2.39 -0.02 3.18 16 36 H 0.09 2.76 4.51 -2.39 -0.01 2.75 16 37 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.09 4.00 2.40 -3.36 -0.01 4.00 16 40 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.07 3.17 7.00 -2.39 -0.02 3.15 16 44 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 45 H 0.25 12.34 8.31 -92.71 -0.77 11.57 16 46 H 0.19 3.55 6.93 -2.91 -0.02 3.53 16 47 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 48 H 0.11 0.06 7.85 -2.39 -0.02 0.05 16 49 H 0.13 -0.49 5.97 -2.39 -0.01 -0.51 16 Total: -1.00 -84.45 369.83 5.05 -79.40 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.97 Total: 18.21 kcal Atomic # 6 Polarization: 19.97 SS G_CDS: 6.51 Total: 26.48 kcal Atomic # 7 Polarization: -104.53 SS G_CDS: -4.31 Total: -108.83 kcal Atomic # 8 Polarization: -58.88 SS G_CDS: -0.16 Total: -59.04 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -84.45 5.05 -79.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039661127.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.754 kcal (2) G-P(sol) polarization free energy of solvation -84.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds