Wall clock time and date at job start Wed Apr 1 2020 05:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35930 * 116.99788 * 2 1 4 4 C 1.38848 * 120.40390 * 0.25595 * 3 2 1 5 5 N 1.31879 * 120.99874 * 180.25871 * 4 3 2 6 6 C 1.31686 * 121.94191 * 359.73987 * 5 4 3 7 7 C 1.39526 * 120.69067 * 359.97438 * 6 5 4 8 8 C 1.47850 * 120.53468 * 180.02562 * 7 6 5 9 9 O 1.21550 * 120.00229 * 228.79104 * 8 7 6 10 10 N 1.34779 * 119.99949 * 48.78412 * 8 7 6 11 11 C 1.46945 * 120.44279 * 5.32558 * 10 8 7 12 12 C 1.54062 * 108.29471 * 125.70917 * 11 10 8 13 13 H 1.08998 * 110.52134 * 172.28027 * 12 11 10 14 14 C 1.53370 * 108.83121 * 294.52298 * 12 11 10 15 15 C 1.53012 * 109.25292 * 60.26807 * 14 12 11 16 16 C 1.53002 * 109.79963 * 60.57859 * 15 14 12 17 17 C 1.53371 * 109.26727 * 299.42653 * 16 15 14 18 18 H 1.09005 * 111.08715 * 177.80003 * 17 16 15 19 19 C 1.46941 * 120.44559 * 185.59687 * 10 8 7 20 20 N 1.47565 * 107.69946 * 51.34824 * 12 11 10 21 21 C 1.36942 * 121.61146 * 120.38667 * 20 12 11 22 22 H 1.08000 * 120.00218 * 205.74181 * 21 20 12 23 23 C 1.38813 * 119.99714 * 25.73872 * 21 20 12 24 24 N 1.31611 * 119.99970 * 33.38596 * 23 21 20 25 25 Si 1.86802 * 119.99624 * 213.38895 * 23 21 20 26 26 H 1.48500 * 109.47398 * 94.99206 * 25 23 21 27 27 H 1.48505 * 109.47068 * 214.98995 * 25 23 21 28 28 H 1.48500 * 109.47538 * 334.98822 * 25 23 21 29 29 C 1.38845 * 120.40496 * 179.97438 * 3 2 1 30 30 C 1.50696 * 120.87978 * 0.02980 * 29 3 2 31 31 H 1.09002 * 109.47044 * 59.99919 * 1 2 3 32 32 H 1.09006 * 109.46907 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47482 * 299.99231 * 1 2 3 34 34 H 1.08004 * 119.50190 * 359.97438 * 4 3 2 35 35 H 1.08000 * 119.66001 * 180.02562 * 6 5 4 36 36 H 1.09003 * 109.62435 * 245.47674 * 11 10 8 37 37 H 1.09006 * 109.62479 * 6.03495 * 11 10 8 38 38 H 1.09001 * 109.50592 * 180.19748 * 14 12 11 39 39 H 1.08994 * 109.50848 * 300.28700 * 14 12 11 40 40 H 1.09002 * 109.41526 * 180.68048 * 15 14 12 41 41 H 1.09000 * 109.41757 * 300.54302 * 15 14 12 42 42 H 1.09001 * 109.50743 * 179.48933 * 16 15 14 43 43 H 1.08997 * 109.50870 * 59.36372 * 16 15 14 44 44 H 1.09007 * 109.62698 * 353.96575 * 19 10 8 45 45 H 1.08995 * 109.63083 * 114.53826 * 19 10 8 46 46 H 0.97005 * 119.99741 * 180.02562 * 24 23 21 47 47 H 1.08996 * 109.47652 * 264.16157 * 30 29 3 48 48 H 1.08999 * 109.47181 * 144.15763 * 30 29 3 49 49 H 1.09003 * 109.47237 * 24.15938 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2112 0.0000 4 6 1.2980 2.3809 0.0053 5 7 1.8844 3.5621 0.0003 6 6 3.1951 3.6893 -0.0049 7 6 4.0198 2.5638 -0.0047 8 6 5.4910 2.7105 -0.0099 9 8 6.1620 2.0787 -0.8024 10 7 6.0881 3.5450 0.8639 11 6 5.3003 4.2244 1.9017 12 6 5.9381 3.9192 3.2705 13 1 5.4662 4.5134 4.0530 14 6 5.7997 2.4190 3.5577 15 6 6.5213 1.6274 2.4650 16 6 8.0063 1.9959 2.4530 17 6 8.1535 3.4945 2.1618 18 1 9.2004 3.7974 2.1846 19 6 7.5346 3.7920 0.7880 20 7 7.3767 4.2340 3.1753 21 6 7.9626 5.1672 3.9886 22 1 8.8547 5.6822 3.6643 23 6 7.4097 5.4511 5.2298 24 7 6.8118 4.5009 5.9168 25 14 7.5141 7.1818 5.9248 26 1 6.2703 7.9233 5.5959 27 1 7.6747 7.1141 7.3996 28 1 8.6805 7.8840 5.3317 29 6 3.4320 1.2937 0.0005 30 6 4.2810 0.0486 0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5137 0.8900 34 1 0.2196 2.3226 0.0091 35 1 3.6365 4.6750 -0.0085 36 1 5.3084 5.2996 1.7223 37 1 4.2749 3.8553 1.8834 38 1 6.2448 2.1913 4.5263 39 1 4.7444 2.1464 3.5689 40 1 6.4143 0.5604 2.6600 41 1 6.0823 1.8645 1.4959 42 1 8.5172 1.4229 1.6793 43 1 8.4454 1.7691 3.4245 44 1 7.9788 3.1385 0.0371 45 1 7.7147 4.8339 0.5232 46 1 6.4251 4.6995 6.7840 47 1 4.5717 -0.1931 1.0227 48 1 5.1742 0.2179 -0.6009 49 1 3.7111 -0.7797 -0.4206 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039682136.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:16 Heat of formation + Delta-G solvation = 23.159865 kcal Electronic energy + Delta-G solvation = -32939.668571 eV Core-core repulsion = 28869.137556 eV Total energy + Delta-G solvation = -4070.531014 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.40705 -40.24818 -38.33571 -37.59303 -34.13460 -33.82077 -32.92200 -32.01050 -30.69356 -30.42365 -28.03753 -27.85857 -26.85645 -25.66513 -24.25088 -23.18582 -22.47966 -21.62816 -21.21176 -19.88982 -18.41994 -18.16360 -17.48808 -16.91816 -16.45457 -16.17001 -15.76148 -15.64300 -14.94630 -14.63088 -14.42404 -14.01280 -13.92772 -13.71756 -13.57891 -13.28047 -13.00339 -12.95638 -12.81735 -12.58819 -12.50482 -12.25580 -12.10527 -11.88091 -11.83625 -11.66715 -11.47626 -11.32615 -10.98653 -10.73758 -10.33116 -10.22528 -10.18348 -10.07971 -10.03273 -9.57924 -9.44914 -9.37790 -9.22891 -8.56616 -8.51781 -7.95309 -6.77261 -5.94279 -3.22414 0.66318 1.11096 2.68986 2.94492 3.32597 3.33840 3.44267 3.45189 3.64452 4.24643 4.38291 4.43307 4.56917 4.65544 4.75167 4.83880 4.99997 5.09143 5.13161 5.20571 5.25140 5.47699 5.64236 5.65823 5.67182 5.71126 5.74913 5.80465 5.87296 5.92082 6.03400 6.10120 6.13935 6.18606 6.29366 6.36434 6.38422 6.44272 6.57278 6.63706 6.80976 6.95118 6.97634 6.99823 7.04936 7.23994 7.44012 7.70043 7.74111 7.78896 8.25506 8.33465 9.03348 9.70655 10.33319 11.12275 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015236 B = 0.003837 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.295162 B = 7296.266105 C = 7885.559528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.306 6.306 3 C 0.067 3.933 4 C 0.033 3.967 5 N -0.455 5.455 6 C 0.102 3.898 7 C -0.139 4.139 8 C 0.566 3.434 9 O -0.542 6.542 10 N -0.578 5.578 11 C 0.080 3.920 12 C 0.182 3.818 13 H 0.100 0.900 14 C -0.118 4.118 15 C -0.137 4.137 16 C -0.122 4.122 17 C 0.152 3.848 18 H 0.080 0.920 19 C 0.101 3.899 20 N -0.576 5.576 21 C -0.265 4.265 22 H 0.070 0.930 23 C 0.015 3.985 24 N -0.875 5.875 25 Si 0.884 3.116 26 H -0.287 1.287 27 H -0.294 1.294 28 H -0.278 1.278 29 C -0.020 4.020 30 C -0.125 4.125 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.033 0.967 40 H 0.031 0.969 41 H 0.079 0.921 42 H 0.043 0.957 43 H 0.059 0.941 44 H 0.085 0.915 45 H 0.067 0.933 46 H 0.254 0.746 47 H 0.078 0.922 48 H 0.096 0.904 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.827 -6.877 -10.958 16.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.218 6.218 3 C 0.020 3.980 4 C -0.124 4.124 5 N -0.164 5.164 6 C -0.057 4.057 7 C -0.144 4.144 8 C 0.354 3.646 9 O -0.421 6.421 10 N -0.309 5.309 11 C -0.044 4.044 12 C 0.075 3.925 13 H 0.118 0.882 14 C -0.157 4.157 15 C -0.175 4.175 16 C -0.161 4.161 17 C 0.045 3.955 18 H 0.098 0.902 19 C -0.023 4.023 20 N -0.297 5.297 21 C -0.393 4.393 22 H 0.087 0.913 23 C -0.186 4.186 24 N -0.516 5.516 25 Si 0.713 3.287 26 H -0.214 1.214 27 H -0.221 1.221 28 H -0.203 1.203 29 C -0.029 4.029 30 C -0.182 4.182 31 H 0.075 0.925 32 H 0.121 0.879 33 H 0.077 0.923 34 H 0.177 0.823 35 H 0.181 0.819 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.097 0.903 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.103 0.897 45 H 0.085 0.915 46 H 0.064 0.936 47 H 0.096 0.904 48 H 0.114 0.886 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.939 -6.634 -11.167 16.982 hybrid contribution 0.045 0.278 0.733 0.785 sum -10.894 -6.355 -10.434 16.369 Atomic orbital electron populations 1.23129 0.78085 1.04369 1.01562 1.86089 1.21437 1.25628 1.88693 1.19703 0.92261 0.85981 1.00069 1.23002 1.00554 0.87130 1.01723 1.67544 1.11766 1.25888 1.11184 1.22878 0.88434 0.98280 0.96116 1.20758 0.95332 0.93833 1.04474 1.17696 0.86258 0.79866 0.80748 1.90730 1.64826 1.46174 1.40362 1.48102 1.09473 1.43387 1.29985 1.22957 0.94406 0.96741 0.90329 1.21028 0.85296 0.94140 0.92083 0.88178 1.21847 0.97370 0.96820 0.99652 1.22096 0.96712 0.97553 1.01127 1.21915 0.96284 0.97362 1.00532 1.21236 0.95395 0.90874 0.88028 0.90169 1.22329 0.78930 1.00841 1.00182 1.44499 1.02439 1.43780 1.38984 1.19046 1.12129 1.12216 0.95910 0.91269 1.24822 1.01417 0.97533 0.94875 1.70265 1.40021 1.29770 1.11587 0.86567 0.78072 0.86290 0.77778 1.21404 1.22050 1.20284 1.19678 0.90800 0.95540 0.96915 1.20931 1.00140 0.93346 1.03749 0.92462 0.87882 0.92300 0.82287 0.81854 0.91174 0.90865 0.90481 0.94802 0.94981 0.90349 0.93826 0.92263 0.89707 0.91487 0.93631 0.90369 0.88556 0.90696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.82 101.05 0.99 1.14 16 2 O -0.31 -3.35 9.58 -19.52 -0.19 -3.53 16 3 C 0.07 0.85 6.68 -39.13 -0.26 0.59 16 4 C 0.03 0.39 10.21 -17.31 -0.18 0.22 16 5 N -0.45 -6.25 10.34 -12.79 -0.13 -6.38 16 6 C 0.10 1.44 8.71 -17.13 -0.15 1.29 16 7 C -0.14 -2.12 4.82 -104.84 -0.51 -2.62 16 8 C 0.57 9.58 4.14 -12.33 -0.05 9.53 16 9 O -0.54 -10.19 14.29 5.32 0.08 -10.12 16 10 N -0.58 -9.87 1.64 -173.07 -0.28 -10.15 16 11 C 0.08 1.39 4.80 -3.25 -0.02 1.38 16 12 C 0.18 3.85 2.80 -66.60 -0.19 3.66 16 13 H 0.10 2.40 6.28 -51.93 -0.33 2.08 16 14 C -0.12 -2.42 5.59 -26.53 -0.15 -2.56 16 15 C -0.14 -2.58 5.55 -26.72 -0.15 -2.73 16 16 C -0.12 -2.34 5.58 -26.54 -0.15 -2.49 16 17 C 0.15 2.98 3.62 -66.85 -0.24 2.74 16 18 H 0.08 1.55 8.01 -51.93 -0.42 1.13 16 19 C 0.10 1.75 5.89 -3.50 -0.02 1.73 16 20 N -0.58 -12.99 2.54 -155.16 -0.39 -13.39 16 21 C -0.26 -6.70 9.59 -15.06 -0.14 -6.84 16 22 H 0.07 1.76 8.01 -52.49 -0.42 1.34 16 23 C 0.01 0.38 4.55 -17.43 -0.08 0.30 16 24 N -0.88 -23.60 12.11 55.49 0.67 -22.93 16 25 Si 0.88 20.40 29.66 -169.99 -5.04 15.36 16 26 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 29 C -0.02 -0.29 5.96 -103.76 -0.62 -0.91 16 30 C -0.13 -1.72 9.45 36.00 0.34 -1.38 16 31 H 0.06 0.30 7.68 -51.93 -0.40 -0.10 16 32 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 34 H 0.16 1.37 6.30 -52.48 -0.33 1.04 16 35 H 0.16 2.10 7.34 -52.49 -0.39 1.72 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.07 1.19 5.08 -51.93 -0.26 0.92 16 38 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.43 2.48 -52.49 -0.13 1.30 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.08 1.44 6.98 -51.92 -0.36 1.08 16 45 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 47 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.10 1.47 5.87 -51.93 -0.30 1.16 16 49 H 0.07 0.91 7.46 -51.93 -0.39 0.52 16 LS Contribution 370.00 15.07 5.58 5.58 Total: -1.00 -29.35 370.00 -8.34 -37.70 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -7.06 Total: 4.83 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -1.56 Total: 3.03 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.14 Total: -52.84 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.11 Total: -13.65 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.04 Total: 15.36 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.35 -8.34 -37.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039682136.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.856 kcal (2) G-P(sol) polarization free energy of solvation -29.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds