Wall clock time and date at job start Wed Apr 1 2020 05:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35930 * 116.99788 * 2 1 4 4 C 1.38848 * 120.40390 * 0.25595 * 3 2 1 5 5 N 1.31879 * 120.99874 * 180.25871 * 4 3 2 6 6 C 1.31686 * 121.94191 * 359.73987 * 5 4 3 7 7 C 1.39526 * 120.69067 * 359.97438 * 6 5 4 8 8 C 1.47850 * 120.53468 * 180.02562 * 7 6 5 9 9 O 1.21550 * 120.00229 * 228.79104 * 8 7 6 10 10 N 1.34779 * 119.99949 * 48.78412 * 8 7 6 11 11 C 1.46945 * 120.44279 * 5.32558 * 10 8 7 12 12 C 1.54062 * 108.29471 * 125.70917 * 11 10 8 13 13 H 1.08998 * 110.52134 * 172.28027 * 12 11 10 14 14 C 1.53370 * 108.83121 * 294.52298 * 12 11 10 15 15 C 1.53012 * 109.25292 * 60.26807 * 14 12 11 16 16 C 1.53002 * 109.79963 * 60.57859 * 15 14 12 17 17 C 1.53371 * 109.26727 * 299.42653 * 16 15 14 18 18 H 1.09005 * 111.08715 * 177.80003 * 17 16 15 19 19 C 1.46941 * 120.44559 * 185.59687 * 10 8 7 20 20 N 1.47565 * 107.69946 * 51.34824 * 12 11 10 21 21 C 1.36942 * 121.61146 * 120.38667 * 20 12 11 22 22 H 1.08000 * 120.00218 * 205.74181 * 21 20 12 23 23 C 1.38813 * 119.99714 * 25.73872 * 21 20 12 24 24 N 1.31611 * 119.99970 * 33.38596 * 23 21 20 25 25 Si 1.86802 * 119.99624 * 213.38895 * 23 21 20 26 26 H 1.48500 * 109.47398 * 94.99206 * 25 23 21 27 27 H 1.48505 * 109.47068 * 214.98995 * 25 23 21 28 28 H 1.48500 * 109.47538 * 334.98822 * 25 23 21 29 29 C 1.38845 * 120.40496 * 179.97438 * 3 2 1 30 30 C 1.50696 * 120.87978 * 0.02980 * 29 3 2 31 31 H 1.09002 * 109.47044 * 59.99919 * 1 2 3 32 32 H 1.09006 * 109.46907 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47482 * 299.99231 * 1 2 3 34 34 H 1.08004 * 119.50190 * 359.97438 * 4 3 2 35 35 H 1.08000 * 119.66001 * 180.02562 * 6 5 4 36 36 H 1.09003 * 109.62435 * 245.47674 * 11 10 8 37 37 H 1.09006 * 109.62479 * 6.03495 * 11 10 8 38 38 H 1.09001 * 109.50592 * 180.19748 * 14 12 11 39 39 H 1.08994 * 109.50848 * 300.28700 * 14 12 11 40 40 H 1.09002 * 109.41526 * 180.68048 * 15 14 12 41 41 H 1.09000 * 109.41757 * 300.54302 * 15 14 12 42 42 H 1.09001 * 109.50743 * 179.48933 * 16 15 14 43 43 H 1.08997 * 109.50870 * 59.36372 * 16 15 14 44 44 H 1.09007 * 109.62698 * 353.96575 * 19 10 8 45 45 H 1.08995 * 109.63083 * 114.53826 * 19 10 8 46 46 H 0.97005 * 119.99741 * 180.02562 * 24 23 21 47 47 H 1.08996 * 109.47652 * 264.16157 * 30 29 3 48 48 H 1.08999 * 109.47181 * 144.15763 * 30 29 3 49 49 H 1.09003 * 109.47237 * 24.15938 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2112 0.0000 4 6 1.2980 2.3809 0.0053 5 7 1.8844 3.5621 0.0003 6 6 3.1951 3.6893 -0.0049 7 6 4.0198 2.5638 -0.0047 8 6 5.4910 2.7105 -0.0099 9 8 6.1620 2.0787 -0.8024 10 7 6.0881 3.5450 0.8639 11 6 5.3003 4.2244 1.9017 12 6 5.9381 3.9192 3.2705 13 1 5.4662 4.5134 4.0530 14 6 5.7997 2.4190 3.5577 15 6 6.5213 1.6274 2.4650 16 6 8.0063 1.9959 2.4530 17 6 8.1535 3.4945 2.1618 18 1 9.2004 3.7974 2.1846 19 6 7.5346 3.7920 0.7880 20 7 7.3767 4.2340 3.1753 21 6 7.9626 5.1672 3.9886 22 1 8.8547 5.6822 3.6643 23 6 7.4097 5.4511 5.2298 24 7 6.8118 4.5009 5.9168 25 14 7.5141 7.1818 5.9248 26 1 6.2703 7.9233 5.5959 27 1 7.6747 7.1141 7.3996 28 1 8.6805 7.8840 5.3317 29 6 3.4320 1.2937 0.0005 30 6 4.2810 0.0486 0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5137 0.8900 34 1 0.2196 2.3226 0.0091 35 1 3.6365 4.6750 -0.0085 36 1 5.3084 5.2996 1.7223 37 1 4.2749 3.8553 1.8834 38 1 6.2448 2.1913 4.5263 39 1 4.7444 2.1464 3.5689 40 1 6.4143 0.5604 2.6600 41 1 6.0823 1.8645 1.4959 42 1 8.5172 1.4229 1.6793 43 1 8.4454 1.7691 3.4245 44 1 7.9788 3.1385 0.0371 45 1 7.7147 4.8339 0.5232 46 1 6.4251 4.6995 6.7840 47 1 4.5717 -0.1931 1.0227 48 1 5.1742 0.2179 -0.6009 49 1 3.7111 -0.7797 -0.4206 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039682136.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:15 Heat of formation + Delta-G solvation = 6.874845 kcal Electronic energy + Delta-G solvation = -32940.374742 eV Core-core repulsion = 28869.137556 eV Total energy + Delta-G solvation = -4071.237186 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.63578 -41.40710 -39.48136 -38.81732 -35.68487 -34.89816 -34.63146 -33.55444 -32.24933 -31.75321 -29.10811 -28.63689 -28.26153 -27.16899 -25.75831 -24.54384 -23.55614 -23.21369 -22.73552 -21.17858 -20.02110 -19.36287 -18.55804 -18.26948 -17.48563 -17.29584 -16.92489 -16.85752 -16.44065 -16.36723 -15.78126 -15.31395 -15.21630 -14.97698 -14.91835 -14.65616 -14.58898 -14.17464 -13.99194 -13.85814 -13.81158 -13.58950 -13.44208 -13.23865 -13.08363 -12.96885 -12.74157 -12.59093 -12.50199 -12.34664 -12.12692 -11.91910 -11.75706 -11.69924 -11.41199 -11.14697 -11.03186 -10.53689 -10.46194 -10.38321 -9.52734 -9.48551 -8.57221 -7.88372 -5.18629 -0.38496 0.09586 1.46631 1.49501 1.54356 1.60548 1.85097 2.26175 2.54515 2.59937 3.18906 3.24872 3.43222 3.48115 3.49251 3.62424 3.92073 4.07439 4.13700 4.16583 4.19326 4.23936 4.29492 4.37500 4.42635 4.43941 4.52603 4.60263 4.64124 4.64619 4.69911 4.78892 4.79549 4.81191 4.88733 4.95541 5.04678 5.06873 5.11831 5.21420 5.31671 5.36044 5.38929 5.47968 5.59177 5.74597 5.77354 6.15611 6.33822 6.35693 6.73378 6.98997 7.12463 7.83278 8.44120 9.15109 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015236 B = 0.003837 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.295162 B = 7296.266105 C = 7885.559528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.318 6.318 3 C 0.073 3.927 4 C 0.041 3.959 5 N -0.465 5.465 6 C 0.097 3.903 7 C -0.156 4.156 8 C 0.572 3.428 9 O -0.560 6.560 10 N -0.579 5.579 11 C 0.096 3.904 12 C 0.180 3.820 13 H 0.069 0.931 14 C -0.108 4.108 15 C -0.132 4.132 16 C -0.117 4.117 17 C 0.148 3.852 18 H 0.080 0.920 19 C 0.109 3.891 20 N -0.589 5.589 21 C -0.267 4.267 22 H 0.066 0.934 23 C -0.029 4.029 24 N -0.905 5.905 25 Si 0.942 3.058 26 H -0.286 1.286 27 H -0.303 1.303 28 H -0.272 1.272 29 C -0.039 4.039 30 C -0.119 4.119 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.070 0.930 34 H 0.195 0.805 35 H 0.172 0.828 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.037 0.963 39 H 0.045 0.955 40 H 0.037 0.963 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.032 0.968 44 H 0.093 0.907 45 H 0.076 0.924 46 H 0.249 0.751 47 H 0.073 0.927 48 H 0.079 0.921 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.754 -6.991 -12.647 19.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.230 6.230 3 C 0.025 3.975 4 C -0.117 4.117 5 N -0.174 5.174 6 C -0.061 4.061 7 C -0.161 4.161 8 C 0.361 3.639 9 O -0.441 6.441 10 N -0.310 5.310 11 C -0.028 4.028 12 C 0.073 3.927 13 H 0.087 0.913 14 C -0.147 4.147 15 C -0.170 4.170 16 C -0.157 4.157 17 C 0.041 3.959 18 H 0.098 0.902 19 C -0.014 4.014 20 N -0.311 5.311 21 C -0.396 4.396 22 H 0.084 0.916 23 C -0.227 4.227 24 N -0.548 5.548 25 Si 0.771 3.229 26 H -0.213 1.213 27 H -0.230 1.230 28 H -0.197 1.197 29 C -0.047 4.047 30 C -0.175 4.175 31 H 0.091 0.909 32 H 0.142 0.858 33 H 0.088 0.912 34 H 0.211 0.789 35 H 0.189 0.811 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.109 0.891 42 H 0.081 0.919 43 H 0.051 0.949 44 H 0.111 0.889 45 H 0.094 0.906 46 H 0.058 0.942 47 H 0.092 0.908 48 H 0.098 0.902 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.868 -6.749 -12.885 19.421 hybrid contribution 0.560 0.188 1.223 1.359 sum -12.308 -6.561 -11.662 18.180 Atomic orbital electron populations 1.23511 0.75604 1.06326 1.02853 1.86090 1.23948 1.24723 1.88225 1.19706 0.91733 0.86998 0.99093 1.23558 1.02116 0.86274 0.99735 1.67614 1.11440 1.26796 1.11549 1.22985 0.88687 0.98289 0.96184 1.20631 0.94131 0.94760 1.06578 1.17920 0.87042 0.78895 0.80027 1.90721 1.65618 1.46721 1.41020 1.48071 1.09305 1.43583 1.30088 1.22704 0.94727 0.97329 0.88083 1.20954 0.84725 0.93712 0.93346 0.91310 1.21697 0.97860 0.97025 0.98154 1.22083 0.96290 0.97609 1.01029 1.21856 0.96580 0.97562 0.99671 1.21376 0.95419 0.90627 0.88518 0.90221 1.22181 0.79105 1.01618 0.98505 1.44669 1.03345 1.44034 1.39031 1.19270 1.11901 1.12450 0.96028 0.91644 1.25388 1.02039 0.99911 0.95361 1.70368 1.41666 1.31032 1.11773 0.85660 0.78004 0.82839 0.76415 1.21315 1.23039 1.19683 1.19835 0.92004 0.95284 0.97626 1.20839 0.99635 0.93848 1.03165 0.90887 0.85811 0.91173 0.78861 0.81074 0.90402 0.89261 0.94423 0.93674 0.94386 0.89062 0.91883 0.94912 0.88896 0.90556 0.94227 0.90847 0.90228 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.82 113.37 1.11 1.21 16 2 O -0.32 -6.00 9.58 -92.76 -0.89 -6.89 16 3 C 0.07 1.65 6.68 22.56 0.15 1.80 16 4 C 0.04 0.84 10.21 84.83 0.87 1.70 16 5 N -0.46 -11.56 10.34 -194.39 -2.01 -13.57 16 6 C 0.10 2.54 8.71 85.03 0.74 3.28 16 7 C -0.16 -4.51 4.82 -20.01 -0.10 -4.60 16 8 C 0.57 18.56 4.14 86.79 0.36 18.92 16 9 O -0.56 -20.40 14.29 -3.87 -0.06 -20.46 16 10 N -0.58 -19.04 1.64 -819.74 -1.34 -20.38 16 11 C 0.10 3.24 4.80 86.65 0.42 3.66 16 12 C 0.18 7.68 2.80 45.27 0.13 7.81 16 13 H 0.07 3.39 6.28 -2.39 -0.01 3.37 16 14 C -0.11 -4.51 5.59 30.72 0.17 -4.34 16 15 C -0.13 -4.96 5.55 30.60 0.17 -4.79 16 16 C -0.12 -4.52 5.58 30.72 0.17 -4.35 16 17 C 0.15 5.75 3.62 45.11 0.16 5.91 16 18 H 0.08 3.07 8.01 -2.38 -0.02 3.06 16 19 C 0.11 3.66 5.89 86.49 0.51 4.17 16 20 N -0.59 -26.86 2.54 -644.80 -1.63 -28.49 16 21 C -0.27 -13.69 9.59 84.03 0.81 -12.89 16 22 H 0.07 3.35 8.01 -2.91 -0.02 3.32 16 23 C -0.03 -1.50 4.55 84.86 0.39 -1.11 16 24 N -0.91 -50.37 12.11 21.65 0.26 -50.11 16 25 Si 0.94 42.65 29.66 68.60 2.03 44.69 16 26 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 27 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 28 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 29 C -0.04 -1.05 5.96 -19.31 -0.12 -1.16 16 30 C -0.12 -3.12 9.45 71.23 0.67 -2.44 16 31 H 0.07 0.47 7.68 -2.39 -0.02 0.45 16 32 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.07 0.51 7.66 -2.39 -0.02 0.49 16 34 H 0.19 2.48 6.30 -2.91 -0.02 2.46 16 35 H 0.17 4.08 7.34 -2.91 -0.02 4.06 16 36 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.09 2.77 5.08 -2.38 -0.01 2.76 16 38 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.09 3.24 2.48 -3.50 -0.01 3.23 16 42 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.09 3.00 6.98 -2.38 -0.02 2.98 16 45 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.25 13.55 8.31 -92.70 -0.77 12.78 16 47 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.08 2.36 5.87 -2.39 -0.01 2.35 16 49 H 0.09 2.01 7.46 -2.39 -0.02 2.00 16 Total: -1.00 -63.87 370.00 3.95 -59.92 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.97 Total: 22.51 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 6.61 Total: 12.78 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -4.72 Total: -112.55 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.94 Total: -27.35 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.69 kcal Total: -63.87 3.95 -59.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039682136.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.795 kcal (2) G-P(sol) polarization free energy of solvation -63.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds