Wall clock time and date at job start Wed Apr 1 2020 06:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33489 * 126.83112 * 2 1 4 4 N 1.20662 * 113.15654 * 180.25775 * 3 2 1 5 5 C 1.30010 * 112.30130 * 0.02562 * 4 3 2 6 6 C 1.50702 * 127.33583 * 179.97438 * 5 4 3 7 7 C 1.53001 * 117.49746 * 10.53889 * 6 5 4 8 8 C 1.53003 * 117.49625 * 301.91688 * 6 5 4 9 9 C 1.37358 * 126.82457 * 180.31611 * 2 1 3 10 10 C 1.47398 * 128.56618 * 359.75548 * 9 2 1 11 11 O 1.21603 * 120.00076 * 82.76034 * 10 9 2 12 12 N 1.34775 * 119.99862 * 262.75890 * 10 9 2 13 13 C 1.46942 * 120.44857 * 5.27195 * 12 10 9 14 14 C 1.53593 * 108.53092 * 125.75080 * 13 12 10 15 15 H 1.09000 * 110.59768 * 172.16384 * 14 13 12 16 16 C 1.53374 * 108.68910 * 294.36195 * 14 13 12 17 17 C 1.53013 * 109.26847 * 60.29353 * 16 14 13 18 18 C 1.53011 * 109.79388 * 60.56986 * 17 16 14 19 19 C 1.53376 * 109.25822 * 299.41946 * 18 17 16 20 20 H 1.09000 * 111.08559 * 177.83111 * 19 18 17 21 21 C 1.46956 * 120.44153 * 184.99657 * 12 10 9 22 22 N 1.47567 * 107.76854 * 51.14781 * 14 13 12 23 23 C 1.36939 * 121.61008 * 120.50392 * 22 14 13 24 24 H 1.07998 * 119.99776 * 208.67367 * 23 22 14 25 25 C 1.38811 * 120.00248 * 28.66758 * 23 22 14 26 26 N 1.31624 * 119.99595 * 17.24150 * 25 23 22 27 27 Si 1.86799 * 120.00140 * 197.24094 * 25 23 22 28 28 H 1.48491 * 109.47426 * 90.00305 * 27 25 23 29 29 H 1.48504 * 109.46880 * 210.00290 * 27 25 23 30 30 H 1.48499 * 109.47009 * 330.00111 * 27 25 23 31 31 H 1.09006 * 109.47157 * 269.68997 * 1 2 3 32 32 H 1.09004 * 109.46777 * 29.68641 * 1 2 3 33 33 H 1.08991 * 109.47583 * 149.68441 * 1 2 3 34 34 H 1.09002 * 115.54954 * 156.24733 * 6 5 4 35 35 H 1.08990 * 117.49958 * 359.97438 * 7 6 5 36 36 H 1.08993 * 117.49787 * 145.02317 * 7 6 5 37 37 H 1.09006 * 117.49526 * 214.98082 * 8 6 5 38 38 H 1.08998 * 117.50011 * 359.97438 * 8 6 5 39 39 H 1.08990 * 109.62898 * 245.46842 * 13 12 10 40 40 H 1.09002 * 109.62325 * 5.84568 * 13 12 10 41 41 H 1.08996 * 109.50371 * 180.23253 * 16 14 13 42 42 H 1.08995 * 109.50415 * 300.35519 * 16 14 13 43 43 H 1.09005 * 109.41513 * 300.47423 * 17 16 14 44 44 H 1.08994 * 109.36438 * 180.63789 * 17 16 14 45 45 H 1.08994 * 109.50862 * 179.48722 * 18 17 16 46 46 H 1.08997 * 109.50897 * 59.35349 * 18 17 16 47 47 H 1.09004 * 109.61932 * 353.95524 * 21 12 10 48 48 H 1.09003 * 109.62249 * 114.51842 * 21 12 10 49 49 H 0.96998 * 119.99848 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3072 1.0685 0.0000 4 7 3.4796 0.7832 -0.0050 5 6 3.6746 -0.5022 -0.0097 6 6 4.9964 -1.2261 -0.0171 7 6 6.2579 -0.3959 0.2287 8 6 5.9561 -0.9326 -1.1720 9 6 2.3303 -1.0995 -0.0061 10 6 1.9585 -2.5258 -0.0090 11 8 1.6732 -3.0776 -1.0544 12 7 1.9349 -3.2184 1.1469 13 6 2.1647 -2.5368 2.4282 14 6 0.9858 -2.8447 3.3633 15 1 1.1853 -2.4713 4.3677 16 6 -0.2827 -2.2094 2.7804 17 6 -0.5536 -2.8018 1.3958 18 6 -0.7626 -4.3132 1.5107 19 6 0.5042 -4.9566 2.0883 20 1 0.3739 -6.0309 2.2187 21 6 1.6729 -4.6644 1.1433 22 7 0.7956 -4.3079 3.3814 23 6 0.8847 -5.0290 4.5422 24 1 1.2023 -6.0608 4.5138 25 6 0.5670 -4.4337 5.7552 26 7 -0.1306 -3.3178 5.7779 27 14 1.1296 -5.2162 7.3554 28 1 2.4644 -4.6812 7.7257 29 1 0.1545 -4.9011 8.4301 30 1 1.2171 -6.6885 7.1824 31 1 -0.3634 -0.0056 1.0277 32 1 -0.3633 0.8928 -0.5090 33 1 -0.3634 -0.8870 -0.5187 34 1 4.9779 -2.2426 0.3760 35 1 6.1318 0.6738 0.3953 36 1 7.0695 -0.8662 0.7837 37 1 6.5693 -1.7559 -1.5385 38 1 5.6313 -0.2162 -1.9266 39 1 3.0906 -2.8992 2.8748 40 1 2.2341 -1.4615 2.2636 41 1 -1.1280 -2.4166 3.4366 42 1 -0.1435 -1.1318 2.6943 43 1 0.2966 -2.6021 0.7436 44 1 -1.4485 -2.3431 0.9753 45 1 -0.9641 -4.7288 0.5235 46 1 -1.6065 -4.5149 2.1704 47 1 1.4155 -4.9872 0.1345 48 1 2.5594 -5.1979 1.4863 49 1 -0.3530 -2.9020 6.6256 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039765276.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:36:15 Heat of formation + Delta-G solvation = 104.407244 kcal Electronic energy + Delta-G solvation = -33232.911502 eV Core-core repulsion = 29165.903638 eV Total energy + Delta-G solvation = -4067.007864 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 5.25 seconds Orbital eigenvalues (eV) -44.84166 -40.64880 -37.83615 -37.52563 -34.12168 -33.69799 -33.03934 -32.66554 -31.82956 -30.38149 -28.16924 -27.06339 -25.68497 -24.86176 -23.98989 -23.19350 -22.56164 -21.60301 -21.26285 -19.97185 -19.23977 -18.29523 -17.88323 -17.52199 -16.87807 -16.02836 -15.87236 -15.40337 -14.83531 -14.71166 -14.58284 -14.19689 -13.67286 -13.60998 -13.47035 -13.30544 -12.98592 -12.81890 -12.73322 -12.50913 -12.15384 -12.08919 -11.85206 -11.78721 -11.62188 -11.42485 -11.31392 -11.21116 -10.99350 -10.77190 -10.57293 -10.33429 -10.19252 -10.16082 -10.07323 -9.92291 -9.57931 -9.48125 -9.39534 -9.21298 -8.58659 -7.97614 -6.68699 -5.89849 -3.34033 1.36463 1.85415 2.61792 2.88345 3.30979 3.37995 3.39461 3.41316 3.67978 3.91627 4.22377 4.38856 4.66671 4.75930 4.80884 4.85687 5.05186 5.11210 5.26409 5.34055 5.38638 5.44114 5.54000 5.57982 5.65725 5.66762 5.74857 5.78905 5.81111 5.87261 5.89572 5.91402 5.93659 5.96093 6.10471 6.20540 6.32527 6.39044 6.43282 6.52769 6.65818 6.79596 6.95100 7.00556 7.04288 7.38931 7.48038 7.67560 7.77166 8.24156 8.30038 8.36285 9.06392 9.68018 10.30071 11.17083 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013037 B = 0.004202 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.145237 B = 6662.077643 C = 7166.397726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.019 3.981 3 O 0.094 5.906 4 N -0.357 5.357 5 C 0.086 3.914 6 C -0.088 4.088 7 C -0.160 4.160 8 C -0.159 4.159 9 C -0.234 4.234 10 C 0.599 3.401 11 O -0.543 6.543 12 N -0.576 5.576 13 C 0.089 3.911 14 C 0.179 3.821 15 H 0.116 0.884 16 C -0.114 4.114 17 C -0.141 4.141 18 C -0.122 4.122 19 C 0.152 3.848 20 H 0.080 0.920 21 C 0.101 3.899 22 N -0.577 5.577 23 C -0.251 4.251 24 H 0.068 0.932 25 C 0.007 3.993 26 N -0.897 5.897 27 Si 0.902 3.098 28 H -0.288 1.288 29 H -0.292 1.292 30 H -0.279 1.279 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.127 0.873 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.034 0.966 43 H 0.078 0.922 44 H 0.033 0.967 45 H 0.043 0.957 46 H 0.058 0.942 47 H 0.084 0.916 48 H 0.065 0.935 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.352 5.993 -10.442 13.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.044 4.044 3 O 0.033 5.967 4 N -0.063 5.063 5 C -0.075 4.075 6 C -0.107 4.107 7 C -0.197 4.197 8 C -0.197 4.197 9 C -0.241 4.241 10 C 0.386 3.614 11 O -0.421 6.421 12 N -0.307 5.307 13 C -0.035 4.035 14 C 0.072 3.928 15 H 0.134 0.866 16 C -0.153 4.153 17 C -0.179 4.179 18 C -0.161 4.161 19 C 0.044 3.956 20 H 0.098 0.902 21 C -0.023 4.023 22 N -0.298 5.298 23 C -0.380 4.380 24 H 0.085 0.915 25 C -0.192 4.192 26 N -0.540 5.540 27 Si 0.732 3.268 28 H -0.215 1.215 29 H -0.218 1.218 30 H -0.205 1.205 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.145 0.855 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.115 0.885 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.052 0.948 43 H 0.095 0.905 44 H 0.052 0.948 45 H 0.061 0.939 46 H 0.077 0.923 47 H 0.102 0.898 48 H 0.083 0.917 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.922 6.812 -10.779 14.059 hybrid contribution -0.168 -1.035 1.043 1.479 sum 5.754 5.777 -9.736 12.699 Atomic orbital electron populations 1.20671 0.83177 1.05030 1.05232 1.24568 0.95959 0.84969 0.98932 1.84511 1.11021 1.32942 1.68241 1.73503 0.96029 1.16316 1.20489 1.23654 0.94177 0.88631 1.01084 1.20229 0.84840 0.99495 1.06163 1.23024 0.97200 1.00470 0.99038 1.23034 1.01285 1.03605 0.91753 1.21821 0.92465 0.95522 1.14316 1.16654 0.77167 0.83845 0.83751 1.90784 1.49972 1.69883 1.31492 1.48100 1.67262 1.09361 1.06026 1.22681 1.01506 0.95543 0.83775 1.21113 0.89328 0.84670 0.97732 0.86622 1.21854 1.01360 0.96425 0.95666 1.22218 1.00677 0.96131 0.98874 1.21909 0.99354 0.96030 0.98802 1.21159 0.90940 0.96791 0.86746 0.90207 1.22226 0.99859 0.78927 1.01285 1.44388 1.81002 1.02289 1.02159 1.19148 1.38666 0.96437 0.83784 0.91478 1.25028 0.97871 0.98220 0.98125 1.69962 1.38403 1.20585 1.25082 0.86298 0.78056 0.78962 0.83476 1.21481 1.21803 1.20478 0.88101 0.89372 0.88498 0.85498 0.87957 0.87788 0.87757 0.88522 0.91807 0.91607 0.90522 0.94769 0.90451 0.94842 0.93873 0.92275 0.89816 0.91703 0.93552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 9.09 36.01 0.33 -0.61 16 2 C 0.02 0.26 7.53 -34.63 -0.26 0.00 16 3 O 0.09 1.34 11.06 18.66 0.21 1.55 16 4 N -0.36 -5.34 11.73 34.78 0.41 -4.93 16 5 C 0.09 1.28 7.08 -79.77 -0.56 0.72 16 6 C -0.09 -1.12 6.32 -91.77 -0.58 -1.70 16 7 C -0.16 -1.67 10.16 -26.73 -0.27 -1.94 16 8 C -0.16 -1.67 10.23 -26.73 -0.27 -1.94 16 9 C -0.23 -3.69 4.19 -102.89 -0.43 -4.12 16 10 C 0.60 10.42 4.82 -12.53 -0.06 10.36 16 11 O -0.54 -10.76 16.46 5.28 0.09 -10.68 16 12 N -0.58 -9.97 1.66 -173.81 -0.29 -10.26 16 13 C 0.09 1.59 5.78 -3.49 -0.02 1.57 16 14 C 0.18 3.73 2.65 -66.85 -0.18 3.55 16 15 H 0.12 2.78 5.92 -51.93 -0.31 2.47 16 16 C -0.11 -2.21 5.53 -26.53 -0.15 -2.36 16 17 C -0.14 -2.50 4.08 -26.72 -0.11 -2.60 16 18 C -0.12 -2.26 5.57 -26.53 -0.15 -2.41 16 19 C 0.15 2.92 3.62 -67.09 -0.24 2.68 16 20 H 0.08 1.52 8.01 -51.93 -0.42 1.10 16 21 C 0.10 1.76 5.85 -3.74 -0.02 1.74 16 22 N -0.58 -12.83 2.53 -155.71 -0.39 -13.22 16 23 C -0.25 -6.25 9.71 -15.06 -0.15 -6.40 16 24 H 0.07 1.67 7.89 -52.49 -0.41 1.25 16 25 C 0.01 0.17 5.00 -17.43 -0.09 0.08 16 26 N -0.90 -23.54 10.93 55.49 0.61 -22.94 16 27 Si 0.90 20.40 29.59 -169.99 -5.03 15.37 16 28 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 29 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 30 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 31 H 0.10 1.12 6.51 -51.93 -0.34 0.78 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 1.17 7.17 -51.93 -0.37 0.80 16 34 H 0.13 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.10 1.13 7.98 -51.93 -0.41 0.71 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.07 1.12 6.34 -51.93 -0.33 0.79 16 41 H 0.08 1.74 7.93 -51.93 -0.41 1.33 16 42 H 0.03 0.59 6.73 -51.93 -0.35 0.24 16 43 H 0.08 1.34 1.68 -52.44 -0.09 1.25 16 44 H 0.03 0.54 8.04 -51.93 -0.42 0.13 16 45 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.08 1.44 6.97 -51.93 -0.36 1.08 16 48 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 375.23 15.07 5.65 5.65 Total: -1.00 -28.29 375.23 -9.12 -37.41 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -7.16 Total: 5.42 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -3.21 Total: -3.38 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.33 Total: -51.35 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.29 Total: -9.13 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.29 -9.12 -37.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039765276.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.818 kcal (2) G-P(sol) polarization free energy of solvation -28.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.25 seconds