Wall clock time and date at job start Wed Apr 1 2020 06:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33489 * 126.83112 * 2 1 4 4 N 1.20662 * 113.15654 * 180.25775 * 3 2 1 5 5 C 1.30010 * 112.30130 * 0.02562 * 4 3 2 6 6 C 1.50702 * 127.33583 * 179.97438 * 5 4 3 7 7 C 1.53001 * 117.49746 * 10.53889 * 6 5 4 8 8 C 1.53003 * 117.49625 * 301.91688 * 6 5 4 9 9 C 1.37358 * 126.82457 * 180.31611 * 2 1 3 10 10 C 1.47398 * 128.56618 * 359.75548 * 9 2 1 11 11 O 1.21603 * 120.00076 * 82.76034 * 10 9 2 12 12 N 1.34775 * 119.99862 * 262.75890 * 10 9 2 13 13 C 1.46942 * 120.44857 * 5.27195 * 12 10 9 14 14 C 1.53593 * 108.53092 * 125.75080 * 13 12 10 15 15 H 1.09000 * 110.59768 * 172.16384 * 14 13 12 16 16 C 1.53374 * 108.68910 * 294.36195 * 14 13 12 17 17 C 1.53013 * 109.26847 * 60.29353 * 16 14 13 18 18 C 1.53011 * 109.79388 * 60.56986 * 17 16 14 19 19 C 1.53376 * 109.25822 * 299.41946 * 18 17 16 20 20 H 1.09000 * 111.08559 * 177.83111 * 19 18 17 21 21 C 1.46956 * 120.44153 * 184.99657 * 12 10 9 22 22 N 1.47567 * 107.76854 * 51.14781 * 14 13 12 23 23 C 1.36939 * 121.61008 * 120.50392 * 22 14 13 24 24 H 1.07998 * 119.99776 * 208.67367 * 23 22 14 25 25 C 1.38811 * 120.00248 * 28.66758 * 23 22 14 26 26 N 1.31624 * 119.99595 * 17.24150 * 25 23 22 27 27 Si 1.86799 * 120.00140 * 197.24094 * 25 23 22 28 28 H 1.48491 * 109.47426 * 90.00305 * 27 25 23 29 29 H 1.48504 * 109.46880 * 210.00290 * 27 25 23 30 30 H 1.48499 * 109.47009 * 330.00111 * 27 25 23 31 31 H 1.09006 * 109.47157 * 269.68997 * 1 2 3 32 32 H 1.09004 * 109.46777 * 29.68641 * 1 2 3 33 33 H 1.08991 * 109.47583 * 149.68441 * 1 2 3 34 34 H 1.09002 * 115.54954 * 156.24733 * 6 5 4 35 35 H 1.08990 * 117.49958 * 359.97438 * 7 6 5 36 36 H 1.08993 * 117.49787 * 145.02317 * 7 6 5 37 37 H 1.09006 * 117.49526 * 214.98082 * 8 6 5 38 38 H 1.08998 * 117.50011 * 359.97438 * 8 6 5 39 39 H 1.08990 * 109.62898 * 245.46842 * 13 12 10 40 40 H 1.09002 * 109.62325 * 5.84568 * 13 12 10 41 41 H 1.08996 * 109.50371 * 180.23253 * 16 14 13 42 42 H 1.08995 * 109.50415 * 300.35519 * 16 14 13 43 43 H 1.09005 * 109.41513 * 300.47423 * 17 16 14 44 44 H 1.08994 * 109.36438 * 180.63789 * 17 16 14 45 45 H 1.08994 * 109.50862 * 179.48722 * 18 17 16 46 46 H 1.08997 * 109.50897 * 59.35349 * 18 17 16 47 47 H 1.09004 * 109.61932 * 353.95524 * 21 12 10 48 48 H 1.09003 * 109.62249 * 114.51842 * 21 12 10 49 49 H 0.96998 * 119.99848 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3072 1.0685 0.0000 4 7 3.4796 0.7832 -0.0050 5 6 3.6746 -0.5022 -0.0097 6 6 4.9964 -1.2261 -0.0171 7 6 6.2579 -0.3959 0.2287 8 6 5.9561 -0.9326 -1.1720 9 6 2.3303 -1.0995 -0.0061 10 6 1.9585 -2.5258 -0.0090 11 8 1.6732 -3.0776 -1.0544 12 7 1.9349 -3.2184 1.1469 13 6 2.1647 -2.5368 2.4282 14 6 0.9858 -2.8447 3.3633 15 1 1.1853 -2.4713 4.3677 16 6 -0.2827 -2.2094 2.7804 17 6 -0.5536 -2.8018 1.3958 18 6 -0.7626 -4.3132 1.5107 19 6 0.5042 -4.9566 2.0883 20 1 0.3739 -6.0309 2.2187 21 6 1.6729 -4.6644 1.1433 22 7 0.7956 -4.3079 3.3814 23 6 0.8847 -5.0290 4.5422 24 1 1.2023 -6.0608 4.5138 25 6 0.5670 -4.4337 5.7552 26 7 -0.1306 -3.3178 5.7779 27 14 1.1296 -5.2162 7.3554 28 1 2.4644 -4.6812 7.7257 29 1 0.1545 -4.9011 8.4301 30 1 1.2171 -6.6885 7.1824 31 1 -0.3634 -0.0056 1.0277 32 1 -0.3633 0.8928 -0.5090 33 1 -0.3634 -0.8870 -0.5187 34 1 4.9779 -2.2426 0.3760 35 1 6.1318 0.6738 0.3953 36 1 7.0695 -0.8662 0.7837 37 1 6.5693 -1.7559 -1.5385 38 1 5.6313 -0.2162 -1.9266 39 1 3.0906 -2.8992 2.8748 40 1 2.2341 -1.4615 2.2636 41 1 -1.1280 -2.4166 3.4366 42 1 -0.1435 -1.1318 2.6943 43 1 0.2966 -2.6021 0.7436 44 1 -1.4485 -2.3431 0.9753 45 1 -0.9641 -4.7288 0.5235 46 1 -1.6065 -4.5149 2.1704 47 1 1.4155 -4.9872 0.1345 48 1 2.5594 -5.1979 1.4863 49 1 -0.3530 -2.9020 6.6256 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039765276.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:35:43 Heat of formation + Delta-G solvation = 91.654460 kcal Electronic energy + Delta-G solvation = -33233.464504 eV Core-core repulsion = 29165.903638 eV Total energy + Delta-G solvation = -4067.560866 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 31.04 seconds Orbital eigenvalues (eV) -45.95942 -42.12337 -39.28505 -38.49371 -35.66454 -34.94544 -34.55826 -33.84009 -33.35523 -32.14012 -29.27521 -28.58993 -27.15885 -26.16188 -25.35950 -24.54937 -23.37810 -23.14776 -22.80161 -21.25630 -20.41199 -19.92509 -19.11521 -18.72024 -18.22219 -17.53139 -17.18232 -16.58501 -16.33274 -16.28606 -15.84442 -15.58011 -15.22504 -15.00843 -14.79392 -14.66939 -14.31079 -14.12467 -13.99007 -13.78466 -13.54069 -13.42992 -13.09360 -13.06926 -13.02980 -12.69303 -12.58703 -12.52864 -12.44470 -12.33145 -12.09342 -11.94484 -11.72238 -11.65131 -11.48727 -11.34940 -11.07274 -11.03805 -10.56871 -10.43385 -10.36850 -9.52141 -8.46234 -7.81182 -5.26677 0.25382 0.74298 1.26373 1.49259 1.52675 1.58561 1.72263 2.11017 2.53764 2.78534 2.87048 3.18522 3.32050 3.48941 3.53406 3.77807 3.86274 3.98408 3.99952 4.10660 4.16135 4.22548 4.28110 4.32018 4.34873 4.45921 4.52641 4.62091 4.65304 4.66464 4.67743 4.71442 4.82001 4.83901 4.88645 4.89771 5.01170 5.03290 5.04782 5.13270 5.14321 5.29150 5.39137 5.45522 5.53186 5.67950 5.73603 5.86973 6.31974 6.43014 6.96483 7.14323 7.18329 7.84712 8.44006 9.22278 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013037 B = 0.004202 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.145237 B = 6662.077643 C = 7166.397726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.033 3.967 3 O 0.095 5.905 4 N -0.369 5.369 5 C 0.087 3.913 6 C -0.116 4.116 7 C -0.147 4.147 8 C -0.147 4.147 9 C -0.266 4.266 10 C 0.609 3.391 11 O -0.565 6.565 12 N -0.574 5.574 13 C 0.106 3.894 14 C 0.176 3.824 15 H 0.083 0.917 16 C -0.103 4.103 17 C -0.135 4.135 18 C -0.119 4.119 19 C 0.147 3.853 20 H 0.079 0.921 21 C 0.108 3.892 22 N -0.591 5.591 23 C -0.256 4.256 24 H 0.064 0.936 25 C -0.037 4.037 26 N -0.918 5.918 27 Si 0.956 3.044 28 H -0.288 1.288 29 H -0.300 1.300 30 H -0.274 1.274 31 H 0.105 0.895 32 H 0.120 0.880 33 H 0.091 0.909 34 H 0.124 0.876 35 H 0.095 0.905 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.039 0.961 42 H 0.053 0.947 43 H 0.086 0.914 44 H 0.050 0.950 45 H 0.061 0.939 46 H 0.035 0.965 47 H 0.092 0.908 48 H 0.070 0.930 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.251 6.494 -11.766 14.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.030 4.030 3 O 0.035 5.965 4 N -0.076 5.076 5 C -0.075 4.075 6 C -0.135 4.135 7 C -0.184 4.184 8 C -0.185 4.185 9 C -0.274 4.274 10 C 0.398 3.602 11 O -0.446 6.446 12 N -0.305 5.305 13 C -0.018 4.018 14 C 0.069 3.931 15 H 0.101 0.899 16 C -0.142 4.142 17 C -0.173 4.173 18 C -0.158 4.158 19 C 0.040 3.960 20 H 0.097 0.903 21 C -0.015 4.015 22 N -0.312 5.312 23 C -0.386 4.386 24 H 0.082 0.918 25 C -0.234 4.234 26 N -0.563 5.563 27 Si 0.786 3.214 28 H -0.216 1.216 29 H -0.227 1.227 30 H -0.200 1.200 31 H 0.123 0.877 32 H 0.139 0.861 33 H 0.109 0.891 34 H 0.142 0.858 35 H 0.114 0.886 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.054 0.946 47 H 0.110 0.890 48 H 0.089 0.911 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.824 7.316 -12.123 15.717 hybrid contribution -0.460 -1.194 1.412 1.906 sum 6.364 6.121 -10.710 13.881 Atomic orbital electron populations 1.20831 0.81244 1.06420 1.05761 1.25020 0.96915 0.84346 0.96727 1.84506 1.10940 1.32900 1.68146 1.73493 0.96347 1.16370 1.21413 1.23979 0.94745 0.88593 1.00181 1.20371 0.84862 0.99651 1.08599 1.23088 0.96253 0.99902 0.99168 1.23122 1.00109 1.03909 0.91402 1.21760 0.93558 0.94975 1.17078 1.16726 0.76163 0.84306 0.83042 1.90769 1.51010 1.70641 1.32154 1.48050 1.67283 1.09270 1.05899 1.22372 0.99840 0.96231 0.83342 1.21007 0.91090 0.84074 0.96915 0.89940 1.21686 0.99137 0.97654 0.95748 1.22188 1.01850 0.95446 0.97840 1.21861 0.98037 0.96808 0.99104 1.21287 0.92109 0.96733 0.85889 0.90259 1.22107 0.99216 0.79198 1.01023 1.44533 1.81394 1.02853 1.02441 1.19367 1.37723 0.96545 0.84985 0.91782 1.25581 0.98494 0.98924 1.00355 1.70101 1.39618 1.21644 1.24951 0.85441 0.77130 0.78409 0.80412 1.21551 1.22692 1.19951 0.87721 0.86117 0.89055 0.85811 0.88628 0.85778 0.85758 0.89039 0.92075 0.90419 0.94233 0.92829 0.89584 0.93104 0.92010 0.94564 0.89015 0.91141 0.94260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.69 9.09 71.24 0.65 -1.04 16 2 C 0.03 0.87 7.53 25.48 0.19 1.06 16 3 O 0.09 2.52 11.06 77.02 0.85 3.37 16 4 N -0.37 -10.48 11.73 -44.78 -0.53 -11.01 16 5 C 0.09 2.46 7.08 45.16 0.32 2.78 16 6 C -0.12 -2.76 6.32 -11.54 -0.07 -2.83 16 7 C -0.15 -2.76 10.16 30.60 0.31 -2.45 16 8 C -0.15 -2.78 10.23 30.60 0.31 -2.47 16 9 C -0.27 -7.98 4.19 -18.74 -0.08 -8.06 16 10 C 0.61 20.22 4.82 86.66 0.42 20.63 16 11 O -0.57 -21.45 16.46 -4.04 -0.07 -21.52 16 12 N -0.57 -19.11 1.66 -822.08 -1.36 -20.47 16 13 C 0.11 3.72 5.78 86.49 0.50 4.22 16 14 C 0.18 7.38 2.65 45.11 0.12 7.50 16 15 H 0.08 4.06 5.92 -2.39 -0.01 4.05 16 16 C -0.10 -3.97 5.53 30.72 0.17 -3.80 16 17 C -0.14 -4.61 4.08 30.60 0.12 -4.49 16 18 C -0.12 -4.33 5.57 30.72 0.17 -4.15 16 19 C 0.15 5.59 3.62 44.95 0.16 5.75 16 20 H 0.08 2.99 8.01 -2.39 -0.02 2.97 16 21 C 0.11 3.63 5.85 86.33 0.50 4.14 16 22 N -0.59 -26.40 2.53 -646.53 -1.64 -28.03 16 23 C -0.26 -12.89 9.71 84.03 0.82 -12.08 16 24 H 0.06 3.20 7.89 -2.91 -0.02 3.18 16 25 C -0.04 -1.90 5.00 84.86 0.42 -1.48 16 26 N -0.92 -49.43 10.93 21.65 0.24 -49.19 16 27 Si 0.96 42.51 29.59 68.60 2.03 44.54 16 28 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 29 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 30 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 31 H 0.10 2.04 6.51 -2.38 -0.02 2.03 16 32 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.09 1.97 7.17 -2.39 -0.02 1.95 16 34 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 35 H 0.10 1.94 7.98 -2.39 -0.02 1.92 16 36 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.08 2.55 6.34 -2.39 -0.02 2.53 16 41 H 0.04 1.81 7.93 -2.39 -0.02 1.80 16 42 H 0.05 1.81 6.73 -2.39 -0.02 1.79 16 43 H 0.09 2.83 1.68 -3.41 -0.01 2.82 16 44 H 0.05 1.56 8.04 -2.39 -0.02 1.54 16 45 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.09 2.99 6.97 -2.38 -0.02 2.97 16 48 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 49 H 0.25 13.19 8.31 -92.71 -0.77 12.42 16 Total: -1.00 -60.93 375.23 5.54 -55.38 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.98 Total: 23.69 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 5.04 Total: 3.23 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -3.29 Total: -108.70 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.79 Total: -18.15 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -60.93 5.54 -55.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039765276.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.035 kcal (2) G-P(sol) polarization free energy of solvation -60.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 31.04 seconds