Wall clock time and date at job start Wed Apr 1 2020 04:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38005 * 120.81770 * 2 1 4 4 C 1.39129 * 119.26189 * 180.27983 * 3 2 1 5 5 O 1.35498 * 119.52347 * 179.72204 * 4 3 2 6 6 N 1.32436 * 120.94876 * 359.69487 * 4 3 2 7 7 C 1.31635 * 121.80270 * 0.02971 * 6 4 3 8 8 C 1.50703 * 119.68991 * 180.02562 * 7 6 4 9 9 C 1.39563 * 120.62425 * 359.97438 * 7 6 4 10 10 C 1.47618 * 120.49970 * 179.97438 * 9 7 6 11 11 O 1.21584 * 119.99707 * 75.54007 * 10 9 7 12 12 N 1.34776 * 120.00290 * 255.54294 * 10 9 7 13 13 C 1.46948 * 120.43722 * 356.05088 * 12 10 9 14 14 C 1.53601 * 108.55103 * 126.04501 * 13 12 10 15 15 H 1.09000 * 110.59546 * 172.72761 * 14 13 12 16 16 C 1.53366 * 108.68874 * 294.31626 * 14 13 12 17 17 C 1.53007 * 109.25300 * 60.26087 * 16 14 13 18 18 C 1.53004 * 109.80171 * 60.57431 * 17 16 14 19 19 C 1.53370 * 109.27599 * 299.44217 * 18 17 16 20 20 H 1.09001 * 110.58927 * 178.09389 * 19 18 17 21 21 C 1.46937 * 120.44590 * 176.32432 * 12 10 9 22 22 N 1.47566 * 107.76455 * 51.10290 * 14 13 12 23 23 C 1.36934 * 121.61310 * 120.50966 * 22 14 13 24 24 H 1.08001 * 120.00470 * 149.14522 * 23 22 14 25 25 C 1.38812 * 119.99920 * 329.14496 * 23 22 14 26 26 N 1.31617 * 119.99891 * 343.21022 * 25 23 22 27 27 Si 1.86803 * 120.00220 * 163.20532 * 25 23 22 28 28 H 1.48496 * 109.46823 * 89.99972 * 27 25 23 29 29 H 1.48494 * 109.47149 * 210.00093 * 27 25 23 30 30 H 1.48502 * 109.46827 * 330.00608 * 27 25 23 31 31 H 1.09005 * 109.46451 * 270.26652 * 1 2 3 32 32 H 1.08997 * 109.47134 * 30.27069 * 1 2 3 33 33 H 1.09001 * 109.46957 * 150.27514 * 1 2 3 34 34 H 1.07997 * 120.37143 * 0.02562 * 3 2 1 35 35 H 0.96697 * 113.99886 * 269.97260 * 5 4 3 36 36 H 1.08998 * 109.46889 * 275.88271 * 8 7 6 37 37 H 1.08999 * 109.47122 * 35.88065 * 8 7 6 38 38 H 1.08992 * 109.47007 * 155.88320 * 8 7 6 39 39 H 1.08999 * 109.62300 * 245.76286 * 13 12 10 40 40 H 1.08999 * 109.62625 * 6.32707 * 13 12 10 41 41 H 1.09007 * 109.50919 * 300.32601 * 16 14 13 42 42 H 1.08994 * 109.54332 * 180.21480 * 16 14 13 43 43 H 1.09000 * 109.41479 * 300.47407 * 17 16 14 44 44 H 1.09002 * 109.36477 * 180.64660 * 17 16 14 45 45 H 1.09000 * 109.50080 * 179.50093 * 18 17 16 46 46 H 1.08993 * 109.50152 * 59.38397 * 18 17 16 47 47 H 1.08998 * 109.62767 * 353.69415 * 21 12 10 48 48 H 1.09002 * 109.62982 * 114.06916 * 21 12 10 49 49 H 0.96999 * 120.00202 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1852 0.0000 4 6 3.6048 1.1474 -0.0059 5 8 4.3042 2.3079 -0.0117 6 7 4.2548 -0.0064 -0.0055 7 6 3.6205 -1.1599 -0.0001 8 6 4.4081 -2.4448 0.0008 9 6 2.2256 -1.2043 0.0060 10 6 1.5172 -2.4993 0.0115 11 8 1.4606 -3.1569 1.0326 12 7 0.9333 -2.9529 -1.1153 13 6 0.9210 -2.1280 -2.3314 14 6 1.5118 -2.9508 -3.4860 15 1 1.4018 -2.4191 -4.4312 16 6 2.9917 -3.2225 -3.1889 17 6 3.1077 -4.0087 -1.8815 18 6 2.3740 -5.3449 -2.0133 19 6 0.8918 -5.0818 -2.3063 20 1 0.3544 -6.0210 -2.4378 21 6 0.2953 -4.2763 -1.1426 22 7 0.8085 -4.2476 -3.5208 23 6 0.1123 -4.6571 -4.6265 24 1 0.0353 -5.7094 -4.8571 25 6 -0.4946 -3.7198 -5.4511 26 7 -0.6920 -2.4925 -5.0185 27 14 -1.0311 -4.2001 -7.1747 28 1 -2.4275 -4.7038 -7.1361 29 1 -0.9572 -3.0138 -8.0648 30 1 -0.1351 -5.2648 -7.6933 31 1 -0.3632 0.0048 1.0277 32 1 -0.3633 0.8875 -0.5180 33 1 -0.3633 -0.8925 -0.5096 34 1 1.6935 2.1315 0.0004 35 1 4.5038 2.6424 -0.8967 36 1 4.6842 -2.7023 -1.0218 37 1 5.3100 -2.3177 0.5996 38 1 3.7998 -3.2435 0.4250 39 1 -0.1038 -1.8443 -2.5709 40 1 1.5238 -1.2337 -2.1732 41 1 3.5235 -2.2758 -3.0928 42 1 3.4263 -3.8031 -4.0026 43 1 2.6648 -3.4305 -1.0705 44 1 4.1595 -4.1929 -1.6626 45 1 2.4673 -5.9045 -1.0826 46 1 2.8099 -5.9203 -2.8298 47 1 0.4865 -4.7943 -0.2028 48 1 -0.7792 -4.1619 -1.2855 49 1 -1.1158 -1.8374 -5.5948 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040016278.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:05 Heat of formation + Delta-G solvation = 17.766683 kcal Electronic energy + Delta-G solvation = -33613.633415 eV Core-core repulsion = 29542.868535 eV Total energy + Delta-G solvation = -4070.764880 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.44559 -39.95340 -37.90821 -37.04986 -34.60978 -33.79823 -32.97344 -32.47172 -31.38295 -30.26243 -28.12432 -27.94117 -26.84932 -25.63200 -23.93379 -23.17889 -21.86585 -21.31239 -21.23039 -19.86346 -18.46571 -18.36144 -17.58426 -17.17793 -16.09765 -15.97009 -15.62573 -14.87623 -14.71684 -14.33729 -14.11137 -13.98853 -13.65781 -13.58168 -13.40967 -13.21704 -13.04451 -12.85045 -12.69525 -12.60524 -12.52322 -12.14800 -12.10405 -11.79617 -11.68335 -11.65146 -11.39271 -11.02493 -10.99788 -10.78137 -10.42742 -10.24939 -10.17632 -10.12426 -9.96152 -9.59189 -9.51775 -9.46002 -9.24641 -8.75914 -8.69375 -7.86384 -6.67035 -5.95825 -3.38497 0.76363 1.11002 2.79268 3.18553 3.28645 3.36828 3.39064 3.51737 3.64280 4.36831 4.42711 4.50089 4.70555 4.98411 5.09800 5.15341 5.22757 5.30284 5.45107 5.52483 5.53271 5.55513 5.60836 5.68161 5.76565 5.78208 5.86484 5.89314 5.93164 5.98499 6.10690 6.15208 6.18406 6.30498 6.32786 6.36566 6.43148 6.44428 6.53220 6.59732 6.67344 6.80454 6.94153 7.01418 7.14657 7.34052 7.38089 7.67712 7.80668 7.87787 8.28020 8.43437 9.03583 9.64894 10.28421 11.13109 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013867 B = 0.004420 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.667766 B = 6333.308945 C = 6932.346863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.010 3.990 3 C -0.197 4.197 4 C 0.326 3.674 5 O -0.483 6.483 6 N -0.507 5.507 7 C 0.199 3.801 8 C -0.125 4.125 9 C -0.179 4.179 10 C 0.567 3.433 11 O -0.549 6.549 12 N -0.578 5.578 13 C 0.101 3.899 14 C 0.183 3.817 15 H 0.109 0.891 16 C -0.134 4.134 17 C -0.148 4.148 18 C -0.124 4.124 19 C 0.154 3.846 20 H 0.080 0.920 21 C 0.099 3.901 22 N -0.577 5.577 23 C -0.250 4.250 24 H 0.065 0.935 25 C 0.009 3.991 26 N -0.901 5.901 27 Si 0.902 3.098 28 H -0.287 1.287 29 H -0.290 1.290 30 H -0.280 1.280 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.144 0.856 35 H 0.401 0.599 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.041 0.959 42 H 0.055 0.945 43 H 0.089 0.911 44 H 0.041 0.959 45 H 0.048 0.952 46 H 0.056 0.944 47 H 0.079 0.921 48 H 0.067 0.933 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.363 5.691 6.861 10.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.002 3.998 3 C -0.218 4.218 4 C 0.147 3.853 5 O -0.290 6.290 6 N -0.227 5.227 7 C 0.060 3.940 8 C -0.182 4.182 9 C -0.184 4.184 10 C 0.354 3.646 11 O -0.428 6.428 12 N -0.309 5.309 13 C -0.022 4.022 14 C 0.075 3.925 15 H 0.126 0.874 16 C -0.173 4.173 17 C -0.186 4.186 18 C -0.163 4.163 19 C 0.046 3.954 20 H 0.098 0.902 21 C -0.025 4.025 22 N -0.298 5.298 23 C -0.379 4.379 24 H 0.083 0.917 25 C -0.190 4.190 26 N -0.545 5.545 27 Si 0.732 3.268 28 H -0.214 1.214 29 H -0.216 1.216 30 H -0.205 1.205 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.162 0.838 35 H 0.259 0.741 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.106 0.894 44 H 0.060 0.940 45 H 0.067 0.933 46 H 0.075 0.925 47 H 0.097 0.903 48 H 0.086 0.914 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.076 5.485 7.837 11.333 hybrid contribution -1.075 0.211 -1.524 1.877 sum 5.001 5.696 6.314 9.865 Atomic orbital electron populations 1.21028 0.89306 1.04704 1.03442 1.20249 0.97045 0.90937 0.91557 1.21833 0.93681 0.99263 1.07063 1.19206 0.87002 0.84993 0.94070 1.84708 1.76096 1.34207 1.33979 1.66963 1.41820 0.97774 1.16172 1.20961 0.89146 0.93029 0.90852 1.21431 1.00220 0.92079 1.04461 1.20721 0.94936 0.94612 1.08121 1.17689 0.78747 0.84608 0.83521 1.90773 1.61724 1.58430 1.31918 1.48288 1.53308 1.18403 1.10940 1.22496 1.03254 0.92411 0.84020 1.20951 0.86933 0.87336 0.97241 0.87384 1.22129 0.99579 0.98321 0.97247 1.22583 0.98294 0.97680 0.99995 1.21956 0.97684 0.96914 0.99794 1.21244 0.93338 0.94199 0.86640 0.90202 1.22314 0.97018 0.82856 1.00292 1.44300 1.57406 1.17475 1.10611 1.19108 1.26003 0.92479 1.00318 0.91697 1.25027 0.97757 0.96603 0.99632 1.69925 1.45343 1.03868 1.35360 0.86308 0.78510 0.77490 0.84496 1.21402 1.21607 1.20522 0.89972 0.90094 0.89834 0.83787 0.74065 0.88423 0.90284 0.89447 0.89004 0.92412 0.94020 0.92576 0.89363 0.94042 0.93315 0.92529 0.90279 0.91434 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 9.55 36.01 0.34 -1.26 16 2 C 0.01 0.14 5.01 -103.96 -0.52 -0.38 16 3 C -0.20 -2.46 9.73 -39.34 -0.38 -2.84 16 4 C 0.33 4.42 7.74 -16.96 -0.13 4.29 16 5 O -0.48 -5.37 13.55 -18.19 -0.25 -5.62 16 6 N -0.51 -7.82 10.28 -9.20 -0.09 -7.91 16 7 C 0.20 3.12 6.79 -82.18 -0.56 2.56 16 8 C -0.13 -1.79 7.98 36.01 0.29 -1.50 16 9 C -0.18 -2.88 4.00 -104.82 -0.42 -3.30 16 10 C 0.57 10.03 2.79 -12.43 -0.03 9.99 16 11 O -0.55 -10.98 15.86 5.29 0.08 -10.90 16 12 N -0.58 -10.33 1.29 -173.44 -0.22 -10.55 16 13 C 0.10 1.90 4.36 -3.49 -0.02 1.88 16 14 C 0.18 3.77 2.61 -66.85 -0.17 3.59 16 15 H 0.11 2.55 6.19 -51.93 -0.32 2.23 16 16 C -0.13 -2.42 5.57 -26.54 -0.15 -2.57 16 17 C -0.15 -2.48 3.26 -26.73 -0.09 -2.57 16 18 C -0.12 -2.15 5.58 -26.54 -0.15 -2.30 16 19 C 0.15 2.93 3.61 -66.85 -0.24 2.69 16 20 H 0.08 1.50 8.03 -51.93 -0.42 1.08 16 21 C 0.10 1.81 5.88 -3.50 -0.02 1.79 16 22 N -0.58 -12.69 2.52 -155.43 -0.39 -13.08 16 23 C -0.25 -6.16 9.70 -15.06 -0.15 -6.31 16 24 H 0.07 1.61 7.88 -52.49 -0.41 1.20 16 25 C 0.01 0.22 4.98 -17.43 -0.09 0.13 16 26 N -0.90 -22.85 10.72 55.49 0.60 -22.25 16 27 Si 0.90 20.14 29.59 -169.99 -5.03 15.11 16 28 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 29 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 30 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 33 H 0.08 1.22 5.55 -51.93 -0.29 0.93 16 34 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.40 2.44 9.06 45.56 0.41 2.85 16 36 H 0.10 1.35 5.44 -51.93 -0.28 1.07 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.09 1.35 5.59 -51.93 -0.29 1.06 16 39 H 0.09 1.94 7.42 -51.93 -0.39 1.56 16 40 H 0.06 1.01 5.69 -51.93 -0.30 0.72 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.09 1.50 0.92 -52.42 -0.05 1.45 16 44 H 0.04 0.63 6.39 -51.93 -0.33 0.30 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.08 1.40 7.01 -51.93 -0.36 1.04 16 48 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 49 H 0.25 6.36 8.31 -40.82 -0.34 6.02 16 LS Contribution 360.91 15.07 5.44 5.44 Total: -1.00 -28.94 360.91 -8.31 -37.25 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -5.96 Total: 8.59 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -2.48 Total: 3.92 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.11 Total: -53.79 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.16 Total: -16.52 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.94 -8.31 -37.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040016278.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.019 kcal (2) G-P(sol) polarization free energy of solvation -28.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds