Wall clock time and date at job start Wed Apr 1 2020 04:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38005 * 120.81770 * 2 1 4 4 C 1.39129 * 119.26189 * 180.27983 * 3 2 1 5 5 O 1.35498 * 119.52347 * 179.72204 * 4 3 2 6 6 N 1.32436 * 120.94876 * 359.69487 * 4 3 2 7 7 C 1.31635 * 121.80270 * 0.02971 * 6 4 3 8 8 C 1.50703 * 119.68991 * 180.02562 * 7 6 4 9 9 C 1.39563 * 120.62425 * 359.97438 * 7 6 4 10 10 C 1.47618 * 120.49970 * 179.97438 * 9 7 6 11 11 O 1.21584 * 119.99707 * 75.54007 * 10 9 7 12 12 N 1.34776 * 120.00290 * 255.54294 * 10 9 7 13 13 C 1.46948 * 120.43722 * 356.05088 * 12 10 9 14 14 C 1.53601 * 108.55103 * 126.04501 * 13 12 10 15 15 H 1.09000 * 110.59546 * 172.72761 * 14 13 12 16 16 C 1.53366 * 108.68874 * 294.31626 * 14 13 12 17 17 C 1.53007 * 109.25300 * 60.26087 * 16 14 13 18 18 C 1.53004 * 109.80171 * 60.57431 * 17 16 14 19 19 C 1.53370 * 109.27599 * 299.44217 * 18 17 16 20 20 H 1.09001 * 110.58927 * 178.09389 * 19 18 17 21 21 C 1.46937 * 120.44590 * 176.32432 * 12 10 9 22 22 N 1.47566 * 107.76455 * 51.10290 * 14 13 12 23 23 C 1.36934 * 121.61310 * 120.50966 * 22 14 13 24 24 H 1.08001 * 120.00470 * 149.14522 * 23 22 14 25 25 C 1.38812 * 119.99920 * 329.14496 * 23 22 14 26 26 N 1.31617 * 119.99891 * 343.21022 * 25 23 22 27 27 Si 1.86803 * 120.00220 * 163.20532 * 25 23 22 28 28 H 1.48496 * 109.46823 * 89.99972 * 27 25 23 29 29 H 1.48494 * 109.47149 * 210.00093 * 27 25 23 30 30 H 1.48502 * 109.46827 * 330.00608 * 27 25 23 31 31 H 1.09005 * 109.46451 * 270.26652 * 1 2 3 32 32 H 1.08997 * 109.47134 * 30.27069 * 1 2 3 33 33 H 1.09001 * 109.46957 * 150.27514 * 1 2 3 34 34 H 1.07997 * 120.37143 * 0.02562 * 3 2 1 35 35 H 0.96697 * 113.99886 * 269.97260 * 5 4 3 36 36 H 1.08998 * 109.46889 * 275.88271 * 8 7 6 37 37 H 1.08999 * 109.47122 * 35.88065 * 8 7 6 38 38 H 1.08992 * 109.47007 * 155.88320 * 8 7 6 39 39 H 1.08999 * 109.62300 * 245.76286 * 13 12 10 40 40 H 1.08999 * 109.62625 * 6.32707 * 13 12 10 41 41 H 1.09007 * 109.50919 * 300.32601 * 16 14 13 42 42 H 1.08994 * 109.54332 * 180.21480 * 16 14 13 43 43 H 1.09000 * 109.41479 * 300.47407 * 17 16 14 44 44 H 1.09002 * 109.36477 * 180.64660 * 17 16 14 45 45 H 1.09000 * 109.50080 * 179.50093 * 18 17 16 46 46 H 1.08993 * 109.50152 * 59.38397 * 18 17 16 47 47 H 1.08998 * 109.62767 * 353.69415 * 21 12 10 48 48 H 1.09002 * 109.62982 * 114.06916 * 21 12 10 49 49 H 0.96999 * 120.00202 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1852 0.0000 4 6 3.6048 1.1474 -0.0059 5 8 4.3042 2.3079 -0.0117 6 7 4.2548 -0.0064 -0.0055 7 6 3.6205 -1.1599 -0.0001 8 6 4.4081 -2.4448 0.0008 9 6 2.2256 -1.2043 0.0060 10 6 1.5172 -2.4993 0.0115 11 8 1.4606 -3.1569 1.0326 12 7 0.9333 -2.9529 -1.1153 13 6 0.9210 -2.1280 -2.3314 14 6 1.5118 -2.9508 -3.4860 15 1 1.4018 -2.4191 -4.4312 16 6 2.9917 -3.2225 -3.1889 17 6 3.1077 -4.0087 -1.8815 18 6 2.3740 -5.3449 -2.0133 19 6 0.8918 -5.0818 -2.3063 20 1 0.3544 -6.0210 -2.4378 21 6 0.2953 -4.2763 -1.1426 22 7 0.8085 -4.2476 -3.5208 23 6 0.1123 -4.6571 -4.6265 24 1 0.0353 -5.7094 -4.8571 25 6 -0.4946 -3.7198 -5.4511 26 7 -0.6920 -2.4925 -5.0185 27 14 -1.0311 -4.2001 -7.1747 28 1 -2.4275 -4.7038 -7.1361 29 1 -0.9572 -3.0138 -8.0648 30 1 -0.1351 -5.2648 -7.6933 31 1 -0.3632 0.0048 1.0277 32 1 -0.3633 0.8875 -0.5180 33 1 -0.3633 -0.8925 -0.5096 34 1 1.6935 2.1315 0.0004 35 1 4.5038 2.6424 -0.8967 36 1 4.6842 -2.7023 -1.0218 37 1 5.3100 -2.3177 0.5996 38 1 3.7998 -3.2435 0.4250 39 1 -0.1038 -1.8443 -2.5709 40 1 1.5238 -1.2337 -2.1732 41 1 3.5235 -2.2758 -3.0928 42 1 3.4263 -3.8031 -4.0026 43 1 2.6648 -3.4305 -1.0705 44 1 4.1595 -4.1929 -1.6626 45 1 2.4673 -5.9045 -1.0826 46 1 2.8099 -5.9203 -2.8298 47 1 0.4865 -4.7943 -0.2028 48 1 -0.7792 -4.1619 -1.2855 49 1 -1.1158 -1.8374 -5.5948 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040016278.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:03 Heat of formation + Delta-G solvation = -0.980686 kcal Electronic energy + Delta-G solvation = -33614.446362 eV Core-core repulsion = 29542.868535 eV Total energy + Delta-G solvation = -4071.577827 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.74826 -41.17240 -39.30249 -38.10902 -35.81207 -35.37989 -34.45714 -33.86563 -32.72893 -31.91346 -29.20993 -29.06916 -28.40041 -27.09472 -25.51471 -24.47663 -23.30578 -22.84555 -22.33959 -21.17227 -20.04938 -19.36889 -19.03270 -18.34410 -17.58139 -17.38557 -16.77443 -16.51889 -16.21724 -15.78972 -15.42452 -15.22115 -15.18386 -14.77343 -14.70204 -14.56274 -14.31766 -14.24279 -14.02229 -13.87704 -13.81772 -13.56822 -13.17983 -13.07493 -13.04270 -13.00202 -12.69963 -12.63200 -12.54482 -12.41127 -12.11445 -11.89677 -11.70734 -11.67549 -11.34743 -11.13939 -10.86049 -10.61185 -10.57010 -10.47500 -9.83758 -9.42883 -8.40941 -7.83849 -5.27813 -0.31670 0.05035 1.41052 1.48921 1.53124 1.59682 1.93640 2.36487 2.54489 2.60287 3.32294 3.34045 3.39333 3.49482 3.52489 3.97137 4.08721 4.16646 4.17299 4.22254 4.25220 4.27635 4.38325 4.40679 4.46535 4.53010 4.58613 4.62698 4.67164 4.76713 4.80376 4.86063 4.88797 4.94385 4.97102 5.03644 5.08055 5.10820 5.15649 5.23891 5.33127 5.40859 5.47880 5.49951 5.59574 5.70621 5.80815 6.37806 6.45638 6.56482 6.80383 7.01636 7.18997 7.83980 8.45371 9.21706 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013867 B = 0.004420 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.667766 B = 6333.308945 C = 6932.346863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.006 3.994 3 C -0.188 4.188 4 C 0.329 3.671 5 O -0.484 6.484 6 N -0.525 5.525 7 C 0.191 3.809 8 C -0.121 4.121 9 C -0.205 4.205 10 C 0.577 3.423 11 O -0.573 6.573 12 N -0.576 5.576 13 C 0.123 3.877 14 C 0.180 3.820 15 H 0.076 0.924 16 C -0.124 4.124 17 C -0.146 4.146 18 C -0.119 4.119 19 C 0.149 3.851 20 H 0.079 0.921 21 C 0.105 3.895 22 N -0.590 5.590 23 C -0.260 4.260 24 H 0.059 0.941 25 C -0.031 4.031 26 N -0.916 5.916 27 Si 0.955 3.045 28 H -0.290 1.290 29 H -0.294 1.294 30 H -0.279 1.279 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.058 0.942 34 H 0.177 0.823 35 H 0.424 0.576 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.045 0.955 43 H 0.090 0.910 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.051 0.949 47 H 0.088 0.912 48 H 0.053 0.947 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.394 6.940 7.544 12.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.002 4.002 3 C -0.209 4.209 4 C 0.150 3.850 5 O -0.295 6.295 6 N -0.246 5.246 7 C 0.052 3.948 8 C -0.178 4.178 9 C -0.210 4.210 10 C 0.367 3.633 11 O -0.454 6.454 12 N -0.307 5.307 13 C 0.000 4.000 14 C 0.072 3.928 15 H 0.094 0.906 16 C -0.163 4.163 17 C -0.183 4.183 18 C -0.158 4.158 19 C 0.042 3.958 20 H 0.097 0.903 21 C -0.019 4.019 22 N -0.311 5.311 23 C -0.390 4.390 24 H 0.076 0.924 25 C -0.228 4.228 26 N -0.561 5.561 27 Si 0.785 3.215 28 H -0.217 1.217 29 H -0.220 1.220 30 H -0.205 1.205 31 H 0.111 0.889 32 H 0.124 0.876 33 H 0.077 0.923 34 H 0.194 0.806 35 H 0.286 0.714 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.107 0.893 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.070 0.930 47 H 0.106 0.894 48 H 0.071 0.929 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.125 6.742 8.516 12.990 hybrid contribution -1.370 -0.103 -1.704 2.189 sum 5.755 6.639 6.812 11.118 Atomic orbital electron populations 1.21052 0.88469 1.04671 1.04096 1.20481 0.97745 0.90883 0.91088 1.22099 0.93336 0.99911 1.05558 1.19452 0.87634 0.85148 0.92750 1.84665 1.75779 1.33028 1.36030 1.67000 1.42244 0.98212 1.17113 1.21084 0.89054 0.93648 0.90985 1.21386 1.00356 0.91282 1.04771 1.20662 0.95319 0.94249 1.10768 1.17862 0.77917 0.84914 0.82636 1.90751 1.62599 1.59441 1.32615 1.48204 1.53514 1.18070 1.10905 1.22105 1.01631 0.92567 0.83715 1.20881 0.88608 0.86788 0.96477 0.90603 1.21992 0.97599 0.99067 0.97636 1.22586 0.99572 0.97107 0.99052 1.21887 0.96042 0.97402 1.00423 1.21369 0.94854 0.93819 0.85787 0.90339 1.22172 0.96201 0.83276 1.00281 1.44429 1.57483 1.18223 1.11002 1.19280 1.25919 0.92308 1.01458 0.92372 1.25551 0.98412 0.96822 1.02013 1.70038 1.45988 1.04254 1.35788 0.85483 0.77779 0.76810 0.81451 1.21680 1.22020 1.20466 0.88948 0.87624 0.92312 0.80573 0.71365 0.88050 0.89012 0.90720 0.91702 0.91021 0.92673 0.93595 0.89285 0.91926 0.91559 0.92994 0.89411 0.92892 0.94040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.55 71.24 0.68 -2.27 16 2 C 0.01 0.15 5.01 -19.43 -0.10 0.06 16 3 C -0.19 -4.11 9.73 22.43 0.22 -3.89 16 4 C 0.33 7.97 7.74 84.82 0.66 8.62 16 5 O -0.48 -9.17 13.55 -87.99 -1.19 -10.36 16 6 N -0.53 -15.02 10.28 -295.89 -3.04 -18.06 16 7 C 0.19 5.67 6.79 42.91 0.29 5.96 16 8 C -0.12 -3.26 7.98 71.24 0.57 -2.69 16 9 C -0.20 -6.32 4.00 -19.99 -0.08 -6.40 16 10 C 0.58 20.04 2.79 86.72 0.24 20.28 16 11 O -0.57 -22.59 15.86 -3.98 -0.06 -22.65 16 12 N -0.58 -20.50 1.29 -820.92 -1.06 -21.56 16 13 C 0.12 4.65 4.36 86.50 0.38 5.02 16 14 C 0.18 7.48 2.61 45.11 0.12 7.60 16 15 H 0.08 3.67 6.19 -2.39 -0.01 3.66 16 16 C -0.12 -4.40 5.57 30.72 0.17 -4.23 16 17 C -0.15 -4.69 3.26 30.60 0.10 -4.59 16 18 C -0.12 -3.97 5.58 30.72 0.17 -3.80 16 19 C 0.15 5.69 3.61 45.11 0.16 5.85 16 20 H 0.08 2.97 8.03 -2.39 -0.02 2.95 16 21 C 0.10 3.86 5.88 86.49 0.51 4.37 16 22 N -0.59 -26.31 2.52 -645.67 -1.62 -27.93 16 23 C -0.26 -13.03 9.70 84.03 0.82 -12.22 16 24 H 0.06 2.94 7.88 -2.91 -0.02 2.91 16 25 C -0.03 -1.56 4.98 84.86 0.42 -1.14 16 26 N -0.92 -47.42 10.72 21.65 0.23 -47.19 16 27 Si 0.96 41.98 29.59 68.60 2.03 44.01 16 28 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 29 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 30 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 31 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 32 H 0.11 1.89 8.10 -2.39 -0.02 1.87 16 33 H 0.06 1.68 5.55 -2.39 -0.01 1.67 16 34 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 35 H 0.42 3.67 9.06 -74.06 -0.67 3.00 16 36 H 0.10 2.60 5.44 -2.39 -0.01 2.58 16 37 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.07 2.20 5.59 -2.39 -0.01 2.18 16 39 H 0.06 2.81 7.42 -2.39 -0.02 2.80 16 40 H 0.07 2.48 5.69 -2.39 -0.01 2.47 16 41 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 42 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.09 2.92 0.92 -3.36 0.00 2.91 16 44 H 0.06 1.77 6.39 -2.39 -0.02 1.76 16 45 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.09 3.08 7.01 -2.39 -0.02 3.07 16 48 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.25 12.74 8.31 -92.71 -0.77 11.97 16 Total: -1.00 -62.14 360.91 0.94 -61.19 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 0.34 Total: 26.01 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 5.33 Total: 16.54 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -5.49 Total: -114.74 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -1.26 Total: -33.01 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -62.14 0.94 -61.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040016278.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.211 kcal (2) G-P(sol) polarization free energy of solvation -62.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds