Wall clock time and date at job start Wed Apr 1 2020 03:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37997 * 120.82159 * 2 1 4 4 C 1.39125 * 119.26522 * 180.27824 * 3 2 1 5 5 O 1.35503 * 119.52981 * 179.72286 * 4 3 2 6 6 N 1.32438 * 120.95027 * 359.69335 * 4 3 2 7 7 C 1.31638 * 121.80085 * 0.03293 * 6 4 3 8 8 C 1.39570 * 120.62293 * 359.97438 * 7 6 4 9 9 C 1.47614 * 120.49750 * 179.97438 * 8 7 6 10 10 O 1.21583 * 119.99928 * 134.77741 * 9 8 7 11 11 N 1.34777 * 120.00376 * 314.49832 * 9 8 7 12 12 C 1.47091 * 125.62261 * 354.98699 * 11 9 8 13 13 C 1.54469 * 107.30206 * 180.97742 * 12 11 9 14 14 C 1.54351 * 102.85339 * 21.47407 * 13 12 11 15 15 C 1.47571 * 125.63292 * 174.67446 * 11 9 8 16 16 C 1.52072 * 110.61063 * 83.54260 * 14 13 12 17 17 C 1.53195 * 109.67805 * 64.18653 * 16 14 13 18 18 C 1.53188 * 109.27844 * 59.96204 * 17 16 14 19 19 N 1.46935 * 108.92954 * 304.67906 * 18 17 16 20 20 C 1.36937 * 120.71027 * 234.28354 * 19 18 17 21 21 H 1.08004 * 120.00108 * 153.27611 * 20 19 18 22 22 C 1.38807 * 120.00315 * 333.28090 * 20 19 18 23 23 N 1.31614 * 120.00442 * 158.16256 * 22 20 19 24 24 Si 1.86805 * 119.99693 * 338.16389 * 22 20 19 25 25 H 1.48492 * 109.47295 * 95.17060 * 24 22 20 26 26 H 1.48502 * 109.46971 * 215.17237 * 24 22 20 27 27 H 1.48502 * 109.46842 * 335.16777 * 24 22 20 28 28 C 1.47109 * 118.57642 * 54.25547 * 19 18 17 29 29 H 1.08994 * 109.47124 * 267.78011 * 1 2 3 30 30 H 1.09006 * 109.46837 * 27.78210 * 1 2 3 31 31 H 1.09001 * 109.47373 * 147.78015 * 1 2 3 32 32 H 1.07999 * 120.37037 * 359.97438 * 3 2 1 33 33 H 0.96696 * 113.99772 * 269.97650 * 5 4 3 34 34 H 1.07991 * 119.69419 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.87159 * 300.40036 * 12 11 9 36 36 H 1.08998 * 109.88333 * 61.39749 * 12 11 9 37 37 H 1.08996 * 110.73270 * 139.81386 * 13 12 11 38 38 H 1.08994 * 110.73105 * 263.13461 * 13 12 11 39 39 H 1.09002 * 110.37598 * 275.55293 * 15 11 9 40 40 H 1.09002 * 110.37648 * 37.89408 * 15 11 9 41 41 H 1.09002 * 109.43225 * 184.24597 * 16 14 13 42 42 H 1.08998 * 109.43493 * 304.16212 * 16 14 13 43 43 H 1.09001 * 109.49771 * 179.90083 * 17 16 14 44 44 H 1.08997 * 109.50436 * 299.97703 * 17 16 14 45 45 H 1.08998 * 109.55947 * 64.51532 * 18 17 16 46 46 H 1.09001 * 109.55700 * 184.72944 * 18 17 16 47 47 H 0.97005 * 120.00350 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.57390 * 187.94065 * 28 19 18 49 49 H 1.09007 * 109.57375 * 67.55827 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 -0.0059 5 8 4.3044 2.3077 -0.0116 6 7 4.2548 -0.0066 -0.0054 7 6 3.6205 -1.1601 0.0000 8 6 2.2256 -1.2044 0.0060 9 6 1.5172 -2.4994 0.0114 10 8 0.5779 -2.6754 0.7632 11 7 1.9079 -3.4849 -0.8208 12 6 2.9500 -3.3719 -1.8527 13 6 3.0355 -4.7369 -2.5707 14 6 1.6612 -5.3708 -2.2678 15 6 1.3654 -4.8571 -0.8430 16 6 0.6144 -4.8760 -3.2537 17 6 0.9751 -5.3438 -4.6672 18 6 1.0218 -6.8747 -4.6967 19 7 1.9570 -7.3430 -3.6646 20 6 2.9898 -8.1829 -3.9858 21 1 3.8885 -8.1872 -3.3869 22 6 2.8817 -9.0285 -5.0812 23 7 3.9664 -9.5063 -5.6534 24 14 1.1965 -9.4886 -5.7432 25 1 0.8391 -8.5797 -6.8617 26 1 1.2230 -10.8901 -6.2334 27 1 0.1879 -9.3618 -4.6606 28 6 1.7603 -6.8898 -2.2789 29 1 -0.3633 -0.0398 1.0268 30 1 -0.3633 0.9093 -0.4790 31 1 -0.3634 -0.8694 -0.5479 32 1 1.6936 2.1314 -0.0004 33 1 4.5039 2.6423 -0.8967 34 1 4.1848 -2.0809 -0.0002 35 1 2.6814 -2.5936 -2.5670 36 1 3.9072 -3.1342 -1.3885 37 1 3.1697 -4.6007 -3.6438 38 1 3.8402 -5.3424 -2.1537 39 1 1.8694 -5.4764 -0.1010 40 1 0.2909 -4.8434 -0.6604 41 1 -0.3614 -5.2753 -2.9774 42 1 0.5805 -3.7868 -3.2304 43 1 0.2221 -4.9891 -5.3710 44 1 1.9502 -4.9439 -4.9452 45 1 0.0276 -7.2741 -4.4966 46 1 1.3595 -7.2106 -5.6771 47 1 3.8908 -10.0976 -6.4187 48 1 2.6061 -7.2051 -1.6680 49 1 0.8403 -7.3188 -1.8815 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040390673.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:22 Heat of formation + Delta-G solvation = -6.903552 kcal Electronic energy + Delta-G solvation = -31197.029496 eV Core-core repulsion = 27125.194834 eV Total energy + Delta-G solvation = -4071.834662 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.28644 -40.20032 -38.71477 -37.33397 -36.20234 -34.22901 -33.19059 -31.75446 -30.94024 -30.56918 -29.57226 -28.39001 -26.21886 -25.38810 -24.55620 -22.97522 -22.66894 -22.07513 -21.32654 -19.87108 -18.83262 -18.49839 -17.71544 -17.17315 -16.77783 -16.29766 -15.93378 -15.84110 -15.38775 -14.78425 -14.59600 -14.06733 -14.03837 -13.97676 -13.66137 -13.61294 -13.41651 -13.28535 -12.99825 -12.88576 -12.69105 -12.46284 -12.32290 -12.24342 -12.11458 -12.06842 -11.59164 -11.48334 -10.97321 -10.77644 -10.54077 -10.49485 -10.35135 -10.07597 -9.96938 -9.90275 -9.70670 -9.69380 -9.46865 -9.35532 -8.70719 -8.63519 -7.02780 -5.99219 -3.33864 0.27953 0.75347 2.42721 2.76199 3.14014 3.29457 3.34133 3.46750 3.49188 4.11234 4.16530 4.27674 4.49641 4.55177 4.64265 4.68423 4.82523 4.93815 4.99700 5.07415 5.17238 5.24775 5.26159 5.29254 5.35867 5.40606 5.49544 5.56008 5.62969 5.68652 5.76401 5.83595 5.85114 5.95897 6.00397 6.03850 6.08672 6.20046 6.28162 6.34265 6.42768 6.51345 6.54652 6.61334 6.68207 6.90429 7.01736 7.35737 7.43896 7.89906 7.94369 8.27731 8.88940 9.68000 10.05479 11.16504 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021240 B = 0.002630 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.945011 B =10642.055138 C =11129.234405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.024 3.976 3 C -0.194 4.194 4 C 0.330 3.670 5 O -0.481 6.481 6 N -0.507 5.507 7 C 0.164 3.836 8 C -0.191 4.191 9 C 0.580 3.420 10 O -0.532 6.532 11 N -0.607 5.607 12 C 0.094 3.906 13 C -0.109 4.109 14 C -0.085 4.085 15 C 0.117 3.883 16 C -0.092 4.092 17 C -0.136 4.136 18 C 0.126 3.874 19 N -0.601 5.601 20 C -0.258 4.258 21 H 0.086 0.914 22 C 0.025 3.975 23 N -0.907 5.907 24 Si 0.880 3.120 25 H -0.290 1.290 26 H -0.304 1.304 27 H -0.270 1.270 28 C 0.165 3.835 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.147 0.853 33 H 0.404 0.596 34 H 0.169 0.831 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.067 0.933 45 H 0.024 0.976 46 H 0.071 0.929 47 H 0.262 0.738 48 H 0.066 0.934 49 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.531 21.321 8.116 23.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.015 3.985 3 C -0.215 4.215 4 C 0.152 3.848 5 O -0.289 6.289 6 N -0.226 5.226 7 C 0.005 3.995 8 C -0.196 4.196 9 C 0.368 3.632 10 O -0.410 6.410 11 N -0.340 5.340 12 C -0.029 4.029 13 C -0.147 4.147 14 C -0.087 4.087 15 C -0.005 4.005 16 C -0.130 4.130 17 C -0.175 4.175 18 C 0.000 4.000 19 N -0.325 5.325 20 C -0.386 4.386 21 H 0.104 0.896 22 C -0.174 4.174 23 N -0.549 5.549 24 Si 0.710 3.290 25 H -0.218 1.218 26 H -0.232 1.232 27 H -0.195 1.195 28 C 0.039 3.961 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.165 0.835 33 H 0.263 0.737 34 H 0.186 0.814 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.089 0.911 47 H 0.072 0.928 48 H 0.085 0.915 49 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.083 21.188 9.038 23.394 hybrid contribution -1.536 -0.177 -1.017 1.851 sum -5.620 21.010 8.021 23.181 Atomic orbital electron populations 1.20903 0.88975 1.03404 1.04109 1.20258 0.97329 0.90705 0.90162 1.21934 0.93745 0.99428 1.06402 1.19352 0.87067 0.85260 0.93114 1.84724 1.75968 1.34085 1.34112 1.67210 1.41893 0.98199 1.15288 1.22850 0.90131 0.95339 0.91149 1.20876 0.95358 0.94311 1.09046 1.17510 0.83104 0.82489 0.80143 1.90805 1.28047 1.81538 1.40578 1.48501 1.38880 1.11869 1.34711 1.22374 0.90455 1.00115 0.89913 1.22572 0.97486 0.92937 1.01671 1.21668 0.95434 0.98904 0.92725 1.22325 0.99822 0.80822 0.97549 1.21183 0.97575 0.99131 0.95073 1.22082 1.01106 0.98757 0.95529 1.21309 0.93047 0.91840 0.93776 1.44317 1.32743 1.53927 1.01480 1.18866 0.93185 1.13817 1.12742 0.89647 1.25237 0.96533 0.97806 0.97866 1.69844 1.27260 1.35555 1.22282 0.86985 0.86677 0.76726 0.78595 1.21787 1.23240 1.19503 1.20680 0.99344 0.88731 0.87369 0.89253 0.90866 0.90352 0.83529 0.73729 0.81441 0.91670 0.91427 0.89089 0.90064 0.90852 0.90296 0.92381 0.93077 0.92836 0.91488 0.95800 0.91112 0.92773 0.91514 0.95670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 9.00 36.01 0.32 -0.69 16 2 C 0.02 0.23 5.94 -103.96 -0.62 -0.38 16 3 C -0.19 -1.65 9.72 -39.34 -0.38 -2.04 16 4 C 0.33 3.23 7.74 -16.96 -0.13 3.10 16 5 O -0.48 -3.85 13.55 -18.20 -0.25 -4.10 16 6 N -0.51 -5.76 10.37 -12.96 -0.13 -5.89 16 7 C 0.16 1.74 9.61 -17.14 -0.16 1.58 16 8 C -0.19 -2.14 5.38 -104.82 -0.56 -2.71 16 9 C 0.58 7.57 6.65 -12.43 -0.08 7.49 16 10 O -0.53 -8.41 15.84 5.29 0.08 -8.33 16 11 N -0.61 -7.41 3.32 -171.82 -0.57 -7.98 16 12 C 0.09 1.02 5.57 -2.95 -0.02 1.01 16 13 C -0.11 -1.45 5.67 -25.25 -0.14 -1.59 16 14 C -0.08 -1.21 0.55 -153.98 -0.08 -1.29 16 15 C 0.12 1.52 5.86 -2.76 -0.02 1.50 16 16 C -0.09 -1.31 4.69 -27.10 -0.13 -1.43 16 17 C -0.14 -2.19 5.91 -26.53 -0.16 -2.34 16 18 C 0.13 2.57 4.19 -3.71 -0.02 2.55 16 19 N -0.60 -13.10 2.66 -172.75 -0.46 -13.56 16 20 C -0.26 -6.75 10.04 -15.06 -0.15 -6.90 16 21 H 0.09 2.38 8.05 -52.48 -0.42 1.96 16 22 C 0.02 0.68 5.22 -17.43 -0.09 0.59 16 23 N -0.91 -26.91 13.97 55.49 0.78 -26.14 16 24 Si 0.88 21.71 24.39 -169.99 -4.15 17.56 16 25 H -0.29 -6.94 6.69 56.52 0.38 -6.56 16 26 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 27 H -0.27 -6.55 6.58 56.52 0.37 -6.18 16 28 C 0.17 2.91 5.20 -4.11 -0.02 2.89 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.08 0.79 6.92 -51.93 -0.36 0.44 16 32 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.40 1.14 9.06 45.56 0.41 1.55 16 34 H 0.17 1.55 6.22 -52.49 -0.33 1.22 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.64 5.78 -51.93 -0.30 0.34 16 37 H 0.09 1.32 6.09 -51.93 -0.32 1.00 16 38 H 0.08 1.14 7.87 -51.93 -0.41 0.73 16 39 H 0.07 0.92 8.01 -51.93 -0.42 0.51 16 40 H 0.08 1.07 7.90 -51.93 -0.41 0.66 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.67 7.83 -51.93 -0.41 0.26 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 1.10 6.31 -51.93 -0.33 0.77 16 45 H 0.02 0.49 7.11 -51.93 -0.37 0.12 16 46 H 0.07 1.61 4.49 -51.93 -0.23 1.38 16 47 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 48 H 0.07 1.17 7.76 -51.93 -0.40 0.77 16 49 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 375.99 15.07 5.67 5.67 Total: -1.00 -32.91 375.99 -7.91 -40.82 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.43 Total: 0.62 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -2.44 Total: 1.33 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.39 Total: -53.57 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.16 Total: -12.42 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.15 Total: 17.56 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.91 -7.91 -40.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040390673.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.916 kcal (2) G-P(sol) polarization free energy of solvation -32.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds