Wall clock time and date at job start Wed Apr 1 2020 03:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37997 * 120.82159 * 2 1 4 4 C 1.39125 * 119.26522 * 180.27824 * 3 2 1 5 5 O 1.35503 * 119.52981 * 179.72286 * 4 3 2 6 6 N 1.32438 * 120.95027 * 359.69335 * 4 3 2 7 7 C 1.31638 * 121.80085 * 0.03293 * 6 4 3 8 8 C 1.39570 * 120.62293 * 359.97438 * 7 6 4 9 9 C 1.47614 * 120.49750 * 179.97438 * 8 7 6 10 10 O 1.21583 * 119.99928 * 134.77741 * 9 8 7 11 11 N 1.34777 * 120.00376 * 314.49832 * 9 8 7 12 12 C 1.47091 * 125.62261 * 354.98699 * 11 9 8 13 13 C 1.54469 * 107.30206 * 180.97742 * 12 11 9 14 14 C 1.54351 * 102.85339 * 21.47407 * 13 12 11 15 15 C 1.47571 * 125.63292 * 174.67446 * 11 9 8 16 16 C 1.52072 * 110.61063 * 83.54260 * 14 13 12 17 17 C 1.53195 * 109.67805 * 64.18653 * 16 14 13 18 18 C 1.53188 * 109.27844 * 59.96204 * 17 16 14 19 19 N 1.46935 * 108.92954 * 304.67906 * 18 17 16 20 20 C 1.36937 * 120.71027 * 234.28354 * 19 18 17 21 21 H 1.08004 * 120.00108 * 153.27611 * 20 19 18 22 22 C 1.38807 * 120.00315 * 333.28090 * 20 19 18 23 23 N 1.31614 * 120.00442 * 158.16256 * 22 20 19 24 24 Si 1.86805 * 119.99693 * 338.16389 * 22 20 19 25 25 H 1.48492 * 109.47295 * 95.17060 * 24 22 20 26 26 H 1.48502 * 109.46971 * 215.17237 * 24 22 20 27 27 H 1.48502 * 109.46842 * 335.16777 * 24 22 20 28 28 C 1.47109 * 118.57642 * 54.25547 * 19 18 17 29 29 H 1.08994 * 109.47124 * 267.78011 * 1 2 3 30 30 H 1.09006 * 109.46837 * 27.78210 * 1 2 3 31 31 H 1.09001 * 109.47373 * 147.78015 * 1 2 3 32 32 H 1.07999 * 120.37037 * 359.97438 * 3 2 1 33 33 H 0.96696 * 113.99772 * 269.97650 * 5 4 3 34 34 H 1.07991 * 119.69419 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.87159 * 300.40036 * 12 11 9 36 36 H 1.08998 * 109.88333 * 61.39749 * 12 11 9 37 37 H 1.08996 * 110.73270 * 139.81386 * 13 12 11 38 38 H 1.08994 * 110.73105 * 263.13461 * 13 12 11 39 39 H 1.09002 * 110.37598 * 275.55293 * 15 11 9 40 40 H 1.09002 * 110.37648 * 37.89408 * 15 11 9 41 41 H 1.09002 * 109.43225 * 184.24597 * 16 14 13 42 42 H 1.08998 * 109.43493 * 304.16212 * 16 14 13 43 43 H 1.09001 * 109.49771 * 179.90083 * 17 16 14 44 44 H 1.08997 * 109.50436 * 299.97703 * 17 16 14 45 45 H 1.08998 * 109.55947 * 64.51532 * 18 17 16 46 46 H 1.09001 * 109.55700 * 184.72944 * 18 17 16 47 47 H 0.97005 * 120.00350 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.57390 * 187.94065 * 28 19 18 49 49 H 1.09007 * 109.57375 * 67.55827 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 -0.0059 5 8 4.3044 2.3077 -0.0116 6 7 4.2548 -0.0066 -0.0054 7 6 3.6205 -1.1601 0.0000 8 6 2.2256 -1.2044 0.0060 9 6 1.5172 -2.4994 0.0114 10 8 0.5779 -2.6754 0.7632 11 7 1.9079 -3.4849 -0.8208 12 6 2.9500 -3.3719 -1.8527 13 6 3.0355 -4.7369 -2.5707 14 6 1.6612 -5.3708 -2.2678 15 6 1.3654 -4.8571 -0.8430 16 6 0.6144 -4.8760 -3.2537 17 6 0.9751 -5.3438 -4.6672 18 6 1.0218 -6.8747 -4.6967 19 7 1.9570 -7.3430 -3.6646 20 6 2.9898 -8.1829 -3.9858 21 1 3.8885 -8.1872 -3.3869 22 6 2.8817 -9.0285 -5.0812 23 7 3.9664 -9.5063 -5.6534 24 14 1.1965 -9.4886 -5.7432 25 1 0.8391 -8.5797 -6.8617 26 1 1.2230 -10.8901 -6.2334 27 1 0.1879 -9.3618 -4.6606 28 6 1.7603 -6.8898 -2.2789 29 1 -0.3633 -0.0398 1.0268 30 1 -0.3633 0.9093 -0.4790 31 1 -0.3634 -0.8694 -0.5479 32 1 1.6936 2.1314 -0.0004 33 1 4.5039 2.6423 -0.8967 34 1 4.1848 -2.0809 -0.0002 35 1 2.6814 -2.5936 -2.5670 36 1 3.9072 -3.1342 -1.3885 37 1 3.1697 -4.6007 -3.6438 38 1 3.8402 -5.3424 -2.1537 39 1 1.8694 -5.4764 -0.1010 40 1 0.2909 -4.8434 -0.6604 41 1 -0.3614 -5.2753 -2.9774 42 1 0.5805 -3.7868 -3.2304 43 1 0.2221 -4.9891 -5.3710 44 1 1.9502 -4.9439 -4.9452 45 1 0.0276 -7.2741 -4.4966 46 1 1.3595 -7.2106 -5.6771 47 1 3.8908 -10.0976 -6.4187 48 1 2.6061 -7.2051 -1.6680 49 1 0.8403 -7.3188 -1.8815 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040390673.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:20 Heat of formation + Delta-G solvation = -31.814748 kcal Electronic energy + Delta-G solvation = -31198.109726 eV Core-core repulsion = 27125.194834 eV Total energy + Delta-G solvation = -4072.914892 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.14098 -41.19619 -39.80556 -38.04858 -37.55237 -35.00087 -34.75844 -33.11316 -32.61666 -31.47674 -30.65370 -29.09322 -27.44271 -27.09391 -25.45628 -24.03705 -23.51311 -23.47486 -22.77889 -20.81368 -19.78151 -19.41276 -18.68484 -18.56751 -18.10010 -17.26465 -17.04653 -16.83021 -16.79785 -15.74487 -15.69182 -15.53007 -15.26589 -15.14734 -14.88381 -14.62928 -14.58574 -14.31511 -14.06003 -13.78995 -13.75221 -13.64793 -13.51109 -13.42121 -13.25421 -13.11181 -12.90904 -12.73451 -12.43684 -12.21661 -12.04212 -11.99812 -11.53946 -11.48444 -11.30440 -11.18354 -11.14651 -10.68794 -10.63928 -10.50900 -10.10560 -9.67800 -8.88919 -8.12743 -5.41691 -0.46480 0.04508 1.31397 1.43825 1.50680 1.51604 1.82065 2.44325 2.44628 2.62412 3.05934 3.21920 3.37604 3.45926 3.55393 3.61973 3.70720 3.84211 3.92260 4.15457 4.18187 4.20357 4.26758 4.34973 4.37808 4.50456 4.55912 4.59683 4.64507 4.65083 4.68038 4.74886 4.81104 4.83487 4.96686 5.02153 5.04339 5.05249 5.09641 5.17651 5.20166 5.25376 5.28265 5.37134 5.42470 5.58793 5.90330 6.17030 6.38423 6.52648 6.76662 6.94715 6.96537 7.66930 8.07856 9.06977 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021240 B = 0.002630 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.945011 B =10642.055138 C =11129.234405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.019 3.981 3 C -0.184 4.184 4 C 0.329 3.671 5 O -0.488 6.488 6 N -0.531 5.531 7 C 0.163 3.837 8 C -0.206 4.206 9 C 0.584 3.416 10 O -0.564 6.564 11 N -0.604 5.604 12 C 0.103 3.897 13 C -0.107 4.107 14 C -0.078 4.078 15 C 0.123 3.877 16 C -0.086 4.086 17 C -0.127 4.127 18 C 0.119 3.881 19 N -0.613 5.613 20 C -0.235 4.235 21 H 0.057 0.943 22 C -0.034 4.034 23 N -0.956 5.956 24 Si 0.939 3.061 25 H -0.279 1.279 26 H -0.317 1.317 27 H -0.262 1.262 28 C 0.163 3.837 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.176 0.824 33 H 0.426 0.574 34 H 0.176 0.824 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.028 0.972 46 H 0.046 0.954 47 H 0.259 0.741 48 H 0.060 0.940 49 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.055 24.424 8.560 26.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.011 3.989 3 C -0.205 4.205 4 C 0.151 3.849 5 O -0.299 6.299 6 N -0.251 5.251 7 C 0.005 3.995 8 C -0.211 4.211 9 C 0.373 3.627 10 O -0.444 6.444 11 N -0.336 5.336 12 C -0.019 4.019 13 C -0.145 4.145 14 C -0.080 4.080 15 C 0.001 3.999 16 C -0.123 4.123 17 C -0.165 4.165 18 C -0.006 4.006 19 N -0.337 5.337 20 C -0.365 4.365 21 H 0.075 0.925 22 C -0.229 4.229 23 N -0.603 5.603 24 Si 0.769 3.231 25 H -0.206 1.206 26 H -0.246 1.246 27 H -0.187 1.187 28 C 0.037 3.963 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.079 0.921 32 H 0.194 0.806 33 H 0.288 0.712 34 H 0.193 0.807 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.081 0.919 45 H 0.046 0.954 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.079 0.921 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -5.629 24.346 9.481 26.726 hybrid contribution -0.990 -1.039 -1.073 1.792 sum -6.620 23.307 8.408 25.646 Atomic orbital electron populations 1.20900 0.88198 1.04057 1.03882 1.20485 0.97981 0.90694 0.89735 1.22151 0.93221 1.00104 1.05026 1.19585 0.87741 0.85291 0.92290 1.84679 1.75805 1.33283 1.36156 1.67230 1.42605 0.98854 1.16387 1.22918 0.89961 0.95630 0.90968 1.20785 0.95585 0.93840 1.10930 1.17735 0.82615 0.82944 0.79438 1.90786 1.29622 1.82155 1.41862 1.48476 1.38896 1.11410 1.34848 1.22344 0.91050 0.98733 0.89738 1.22479 0.96547 0.94199 1.01240 1.21477 0.96298 0.96296 0.93909 1.22173 0.99818 0.81446 0.96501 1.21142 0.97415 1.00227 0.93520 1.21972 1.01868 0.95224 0.97485 1.21371 0.92325 0.94917 0.91978 1.44416 1.32057 1.53534 1.03682 1.18823 0.93258 1.13238 1.11143 0.92478 1.25794 0.99259 0.98751 0.99068 1.69965 1.29216 1.37512 1.23615 0.86015 0.82979 0.75623 0.78484 1.20555 1.24629 1.18674 1.20809 0.99293 0.91172 0.84990 0.89682 0.88016 0.92051 0.80634 0.71163 0.80728 0.90362 0.89645 0.90120 0.91221 0.90599 0.90493 0.91972 0.91134 0.90456 0.91866 0.95424 0.93614 0.93168 0.92116 0.95071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 9.00 71.24 0.64 -1.05 16 2 C 0.02 0.33 5.94 -19.43 -0.12 0.22 16 3 C -0.18 -2.56 9.72 22.43 0.22 -2.34 16 4 C 0.33 5.58 7.74 84.81 0.66 6.23 16 5 O -0.49 -6.44 13.55 -88.04 -1.19 -7.64 16 6 N -0.53 -11.02 10.37 -307.80 -3.19 -14.21 16 7 C 0.16 3.19 9.61 85.04 0.82 4.01 16 8 C -0.21 -4.25 5.38 -19.99 -0.11 -4.35 16 9 C 0.58 14.32 6.65 86.72 0.58 14.90 16 10 O -0.56 -17.27 15.84 -3.98 -0.06 -17.33 16 11 N -0.60 -13.61 3.32 -815.77 -2.71 -16.32 16 12 C 0.10 2.03 5.57 86.77 0.48 2.51 16 13 C -0.11 -2.71 5.67 31.55 0.18 -2.53 16 14 C -0.08 -2.08 0.55 -51.84 -0.03 -2.11 16 15 C 0.12 3.00 5.86 86.62 0.51 3.51 16 16 C -0.09 -2.19 4.69 30.35 0.14 -2.05 16 17 C -0.13 -3.78 5.91 30.72 0.18 -3.60 16 18 C 0.12 4.69 4.19 86.36 0.36 5.05 16 19 N -0.61 -26.52 2.66 -700.46 -1.87 -28.39 16 20 C -0.23 -12.56 10.04 84.03 0.84 -11.72 16 21 H 0.06 3.32 8.05 -2.91 -0.02 3.30 16 22 C -0.03 -1.93 5.22 84.86 0.44 -1.49 16 23 N -0.96 -58.76 13.97 21.65 0.30 -58.46 16 24 Si 0.94 45.61 24.39 68.60 1.67 47.29 16 25 H -0.28 -12.85 6.69 99.48 0.67 -12.18 16 26 H -0.32 -15.92 7.11 99.48 0.71 -15.21 16 27 H -0.26 -12.21 6.58 99.48 0.65 -11.55 16 28 C 0.16 5.62 5.20 86.01 0.45 6.07 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.10 0.88 8.09 -2.38 -0.02 0.86 16 31 H 0.06 1.14 6.92 -2.39 -0.02 1.12 16 32 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 33 H 0.43 1.15 9.06 -74.06 -0.67 0.48 16 34 H 0.18 2.94 6.22 -2.92 -0.02 2.92 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.09 1.42 5.78 -2.39 -0.01 1.40 16 37 H 0.08 2.24 6.09 -2.39 -0.01 2.23 16 38 H 0.07 1.93 7.87 -2.39 -0.02 1.91 16 39 H 0.08 1.82 8.01 -2.39 -0.02 1.80 16 40 H 0.08 1.94 7.90 -2.39 -0.02 1.92 16 41 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.07 1.60 7.83 -2.39 -0.02 1.58 16 43 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.06 1.95 6.31 -2.39 -0.02 1.94 16 45 H 0.03 1.08 7.11 -2.39 -0.02 1.06 16 46 H 0.05 2.04 4.49 -2.39 -0.01 2.03 16 47 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 48 H 0.06 2.14 7.76 -2.39 -0.02 2.12 16 49 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -72.46 375.99 -0.58 -73.03 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.22 Total: 10.78 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 6.25 Total: 11.24 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -7.46 Total: -117.38 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -1.26 Total: -24.97 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.67 Total: 47.29 kcal Total: -72.46 -0.58 -73.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040390673.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.219 kcal (2) G-P(sol) polarization free energy of solvation -72.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds