Wall clock time and date at job start Wed Apr 1 2020 03:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37998 * 120.82449 * 2 1 4 4 C 1.39129 * 119.26436 * 180.02562 * 3 2 1 5 5 O 1.35495 * 119.52690 * 179.97438 * 4 3 2 6 6 N 1.32441 * 120.94869 * 0.25860 * 4 3 2 7 7 C 1.31634 * 121.80138 * 359.47039 * 6 4 3 8 8 C 1.39567 * 120.62550 * 0.52580 * 7 6 4 9 9 C 1.47614 * 120.50054 * 179.72182 * 8 7 6 10 10 O 1.21584 * 119.99741 * 216.37053 * 9 8 7 11 11 N 1.34772 * 120.00055 * 36.36809 * 9 8 7 12 12 C 1.47485 * 125.66206 * 4.83128 * 11 9 8 13 13 C 1.55241 * 104.79094 * 155.92862 * 12 11 9 14 14 C 1.54521 * 101.43682 * 36.66880 * 13 12 11 15 15 C 1.47175 * 125.66018 * 185.14778 * 11 9 8 16 16 C 1.52273 * 110.20092 * 83.42280 * 14 13 12 17 17 C 1.53313 * 109.41666 * 182.19843 * 16 14 13 18 18 N 1.46932 * 108.70738 * 306.48926 * 17 16 14 19 19 C 1.36933 * 120.56305 * 234.21223 * 18 17 16 20 20 H 1.07999 * 119.99967 * 163.81966 * 19 18 17 21 21 C 1.38808 * 120.00114 * 343.80915 * 19 18 17 22 22 N 1.31613 * 120.00289 * 327.52940 * 21 19 18 23 23 Si 1.86805 * 119.99716 * 147.52560 * 21 19 18 24 24 H 1.48504 * 109.46959 * 95.00268 * 23 21 19 25 25 H 1.48505 * 109.47105 * 215.00131 * 23 21 19 26 26 H 1.48497 * 109.47265 * 335.00250 * 23 21 19 27 27 C 1.46935 * 118.87008 * 54.23705 * 18 17 16 28 28 C 1.52272 * 110.20758 * 206.60609 * 14 13 12 29 29 H 1.08999 * 109.47143 * 85.74709 * 1 2 3 30 30 H 1.08999 * 109.47543 * 205.75697 * 1 2 3 31 31 H 1.09008 * 109.46774 * 325.75327 * 1 2 3 32 32 H 1.07996 * 120.36782 * 0.02562 * 3 2 1 33 33 H 0.96701 * 113.99923 * 89.99414 * 5 4 3 34 34 H 1.07995 * 119.69188 * 180.29305 * 7 6 4 35 35 H 1.08989 * 110.35767 * 274.88204 * 12 11 9 36 36 H 1.09000 * 110.35008 * 37.16742 * 12 11 9 37 37 H 1.08997 * 111.20539 * 278.57569 * 13 12 11 38 38 H 1.09000 * 110.94544 * 154.65308 * 13 12 11 39 39 H 1.09001 * 109.90404 * 300.83134 * 15 11 9 40 40 H 1.08987 * 109.91497 * 61.91306 * 15 11 9 41 41 H 1.08996 * 109.48221 * 302.17778 * 16 14 13 42 42 H 1.08996 * 109.48380 * 62.21542 * 16 14 13 43 43 H 1.08998 * 109.59943 * 186.72273 * 17 16 14 44 44 H 1.09002 * 109.59925 * 66.25509 * 17 16 14 45 45 H 0.97005 * 120.00369 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.59970 * 185.98978 * 27 18 17 47 47 H 1.09004 * 109.72836 * 65.59646 * 27 18 17 48 48 H 1.08998 * 109.48449 * 297.77924 * 28 14 13 49 49 H 1.09006 * 109.47995 * 57.79700 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1472 -0.0005 5 8 4.3045 2.3075 -0.0011 6 7 4.2548 -0.0068 -0.0062 7 6 3.6205 -1.1602 -0.0011 8 6 2.2255 -1.2045 -0.0006 9 6 1.5170 -2.4995 -0.0011 10 8 0.4812 -2.6254 -0.6252 11 7 2.0184 -3.5422 0.6901 12 6 3.2039 -3.5026 1.5665 13 6 3.0027 -4.6792 2.5589 14 6 2.3488 -5.7411 1.6465 15 6 1.4775 -4.9109 0.6906 16 6 3.4184 -6.5014 0.8742 17 6 2.7483 -7.5112 -0.0647 18 7 1.8320 -8.3491 0.7209 19 6 1.9335 -9.7142 0.6857 20 1 1.4494 -10.3114 1.4442 21 6 2.6583 -10.3304 -0.3251 22 7 2.7047 -9.7908 -1.5246 23 14 3.5680 -11.9257 0.0172 24 1 2.7158 -13.0760 -0.3776 25 1 4.8302 -11.9534 -0.7646 26 1 3.8811 -12.0159 1.4660 27 6 0.8046 -7.6972 1.5446 28 6 1.4875 -6.6864 2.4732 29 1 -0.3633 0.0762 -1.0248 30 1 -0.3634 -0.9255 0.4466 31 1 -0.3633 0.8496 0.5784 32 1 1.6937 2.1313 0.0004 33 1 4.5078 2.6446 0.8822 34 1 4.1847 -2.0810 -0.0012 35 1 4.1124 -3.6475 0.9821 36 1 3.2457 -2.5558 2.1051 37 1 2.3345 -4.3985 3.3730 38 1 3.9593 -5.0312 2.9450 39 1 0.4457 -4.9021 1.0420 40 1 1.5234 -5.3286 -0.3150 41 1 4.0122 -5.7994 0.2887 42 1 4.0657 -7.0298 1.5740 43 1 3.5087 -8.1382 -0.5302 44 1 2.1885 -6.9795 -0.8342 45 1 3.2116 -10.2212 -2.2309 46 1 0.2835 -8.4468 2.1402 47 1 0.0915 -7.1801 0.9024 48 1 2.1147 -7.2169 3.1897 49 1 0.7295 -6.1138 3.0078 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040846155.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:46 Heat of formation + Delta-G solvation = -7.333194 kcal Electronic energy + Delta-G solvation = -31114.312645 eV Core-core repulsion = 27042.459352 eV Total energy + Delta-G solvation = -4071.853293 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.26508 -40.14941 -38.61383 -37.28021 -36.02791 -34.16706 -33.27546 -31.44207 -30.70413 -30.04786 -29.37406 -28.36502 -26.62172 -25.17090 -24.07181 -22.93727 -22.57800 -22.30244 -20.74461 -19.98044 -18.78358 -18.25210 -17.81946 -17.12050 -16.54742 -16.27152 -16.13054 -15.49433 -14.89325 -14.83927 -14.43829 -14.09960 -14.02009 -13.73944 -13.43455 -13.35757 -13.27586 -13.08829 -13.00579 -12.88565 -12.71582 -12.39505 -12.28931 -12.09819 -11.96029 -11.69868 -11.41050 -11.27644 -11.01738 -10.66839 -10.49261 -10.33659 -10.23281 -10.21141 -9.93167 -9.84401 -9.64115 -9.56369 -9.45749 -9.30325 -8.62044 -8.34972 -6.85235 -5.85741 -3.06987 0.28946 0.78584 2.54319 2.84875 3.17182 3.37809 3.38049 3.47757 3.51040 4.14806 4.22613 4.33333 4.51656 4.56844 4.60420 4.76951 4.88055 4.92468 5.07021 5.23259 5.25842 5.29494 5.32271 5.37316 5.39085 5.42512 5.60218 5.63751 5.68928 5.85704 5.90969 5.94608 6.00414 6.04370 6.06139 6.16818 6.22303 6.24947 6.41633 6.53695 6.59960 6.68387 6.77621 6.91151 7.02988 7.29241 7.43591 7.47301 7.57256 7.80962 8.04967 8.34328 9.15835 9.85161 10.37225 11.23439 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020939 B = 0.002518 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.926134 B =11117.185481 C =11415.852393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.027 3.973 3 C -0.196 4.196 4 C 0.330 3.670 5 O -0.481 6.481 6 N -0.509 5.509 7 C 0.162 3.838 8 C -0.192 4.192 9 C 0.576 3.424 10 O -0.528 6.528 11 N -0.608 5.608 12 C 0.095 3.905 13 C -0.126 4.126 14 C -0.056 4.056 15 C 0.118 3.882 16 C -0.126 4.126 17 C 0.161 3.839 18 N -0.591 5.591 19 C -0.255 4.255 20 H 0.071 0.929 21 C 0.002 3.998 22 N -0.888 5.888 23 Si 0.883 3.117 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.143 3.857 28 C -0.117 4.117 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.147 0.853 33 H 0.403 0.597 34 H 0.170 0.830 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.050 0.950 42 H 0.062 0.938 43 H 0.094 0.906 44 H 0.018 0.982 45 H 0.253 0.747 46 H 0.055 0.945 47 H 0.019 0.981 48 H 0.065 0.935 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.896 22.443 8.907 24.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.019 3.981 3 C -0.217 4.217 4 C 0.152 3.848 5 O -0.288 6.288 6 N -0.228 5.228 7 C 0.003 3.997 8 C -0.197 4.197 9 C 0.364 3.636 10 O -0.405 6.405 11 N -0.341 5.341 12 C -0.028 4.028 13 C -0.164 4.164 14 C -0.057 4.057 15 C -0.003 4.003 16 C -0.165 4.165 17 C 0.035 3.965 18 N -0.314 5.314 19 C -0.383 4.383 20 H 0.089 0.911 21 C -0.197 4.197 22 N -0.532 5.532 23 Si 0.712 3.288 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.017 3.983 28 C -0.157 4.157 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.165 0.835 33 H 0.262 0.738 34 H 0.186 0.814 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.112 0.888 44 H 0.035 0.965 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.036 0.964 48 H 0.084 0.916 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.238 22.395 7.767 23.736 hybrid contribution -0.088 -0.665 0.499 0.836 sum 1.149 21.730 8.266 23.278 Atomic orbital electron populations 1.20970 0.88861 1.03923 1.03928 1.20298 0.97482 0.90647 0.89676 1.21936 0.93734 0.99468 1.06581 1.19363 0.87089 0.85264 0.93077 1.84729 1.75951 1.34090 1.34077 1.67214 1.41917 0.98187 1.15437 1.22991 0.90319 0.95413 0.90933 1.20904 0.95290 0.94377 1.09132 1.17500 0.84324 0.82402 0.79375 1.90812 1.23010 1.83317 1.43375 1.48516 1.29834 1.10079 1.45703 1.22612 0.88379 0.99725 0.92093 1.22932 1.01912 0.94538 0.97033 1.20999 0.96050 0.94043 0.94601 1.22202 0.97514 0.79092 1.01535 1.22070 0.96584 0.98340 0.99496 1.20952 0.93755 0.91103 0.90668 1.44184 1.33043 1.02411 1.51729 1.19162 1.30196 0.81790 1.07190 0.91136 1.24673 1.03093 0.97677 0.94234 1.70241 1.41804 1.41378 0.99804 0.86565 0.80297 0.83965 0.77936 1.21669 1.21569 1.20540 1.20918 0.90860 0.93926 0.92613 1.21912 0.98326 0.97300 0.98118 0.89346 0.89645 0.91042 0.83543 0.73833 0.81357 0.90853 0.90967 0.90782 0.89666 0.91333 0.90066 0.93156 0.91972 0.88824 0.96452 0.93666 0.92672 0.96361 0.91596 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.10 36.00 0.33 -0.80 16 2 C 0.03 0.28 5.94 -103.96 -0.62 -0.33 16 3 C -0.20 -1.74 9.74 -39.34 -0.38 -2.12 16 4 C 0.33 3.31 7.74 -16.96 -0.13 3.18 16 5 O -0.48 -3.90 13.55 -18.18 -0.25 -4.15 16 6 N -0.51 -5.91 10.37 -12.97 -0.13 -6.04 16 7 C 0.16 1.80 9.35 -17.14 -0.16 1.64 16 8 C -0.19 -2.30 5.43 -104.82 -0.57 -2.87 16 9 C 0.58 8.31 6.98 -12.44 -0.09 8.23 16 10 O -0.53 -9.26 15.12 5.29 0.08 -9.18 16 11 N -0.61 -8.21 3.33 -171.73 -0.57 -8.78 16 12 C 0.09 0.99 4.90 -2.32 -0.01 0.98 16 13 C -0.13 -1.39 6.00 -24.75 -0.15 -1.54 16 14 C -0.06 -0.82 0.53 -154.09 -0.08 -0.90 16 15 C 0.12 1.83 5.06 -3.31 -0.02 1.82 16 16 C -0.13 -2.16 4.78 -26.94 -0.13 -2.28 16 17 C 0.16 3.63 5.28 -3.64 -0.02 3.61 16 18 N -0.59 -14.10 3.02 -172.16 -0.52 -14.62 16 19 C -0.25 -6.81 9.59 -15.06 -0.14 -6.96 16 20 H 0.07 1.86 7.92 -52.49 -0.42 1.44 16 21 C 0.00 0.05 4.62 -17.43 -0.08 -0.03 16 22 N -0.89 -25.44 11.40 55.49 0.63 -24.81 16 23 Si 0.88 21.20 29.66 -169.99 -5.04 16.16 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 27 C 0.14 2.82 6.24 -3.64 -0.02 2.80 16 28 C -0.12 -1.82 4.70 -26.94 -0.13 -1.95 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.97 6.22 -51.93 -0.32 0.65 16 31 H 0.07 0.47 8.13 -51.92 -0.42 0.05 16 32 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 33 H 0.40 1.10 9.06 45.56 0.41 1.51 16 34 H 0.17 1.66 5.73 -52.49 -0.30 1.36 16 35 H 0.07 0.71 6.53 -51.94 -0.34 0.37 16 36 H 0.07 0.64 7.25 -51.93 -0.38 0.26 16 37 H 0.07 0.76 8.01 -51.93 -0.42 0.34 16 38 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 39 H 0.07 1.10 7.59 -51.93 -0.39 0.71 16 40 H 0.08 1.50 6.08 -51.94 -0.32 1.18 16 41 H 0.05 0.78 7.47 -51.93 -0.39 0.40 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.09 2.41 5.63 -51.93 -0.29 2.12 16 44 H 0.02 0.42 6.53 -51.93 -0.34 0.08 16 45 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.05 1.07 7.87 -51.93 -0.41 0.66 16 47 H 0.02 0.37 7.48 -51.93 -0.39 -0.02 16 48 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 49 H 0.05 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 378.14 15.07 5.70 5.70 Total: -1.00 -33.06 378.14 -8.87 -41.94 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.37 Total: 1.32 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -2.40 Total: 2.46 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -0.59 Total: -54.26 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.17 Total: -13.33 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.04 Total: 16.16 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.06 -8.87 -41.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040846155.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.603 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds