Wall clock time and date at job start Wed Apr 1 2020 03:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37998 * 120.82449 * 2 1 4 4 C 1.39129 * 119.26436 * 180.02562 * 3 2 1 5 5 O 1.35495 * 119.52690 * 179.97438 * 4 3 2 6 6 N 1.32441 * 120.94869 * 0.25860 * 4 3 2 7 7 C 1.31634 * 121.80138 * 359.47039 * 6 4 3 8 8 C 1.39567 * 120.62550 * 0.52580 * 7 6 4 9 9 C 1.47614 * 120.50054 * 179.72182 * 8 7 6 10 10 O 1.21584 * 119.99741 * 216.37053 * 9 8 7 11 11 N 1.34772 * 120.00055 * 36.36809 * 9 8 7 12 12 C 1.47485 * 125.66206 * 4.83128 * 11 9 8 13 13 C 1.55241 * 104.79094 * 155.92862 * 12 11 9 14 14 C 1.54521 * 101.43682 * 36.66880 * 13 12 11 15 15 C 1.47175 * 125.66018 * 185.14778 * 11 9 8 16 16 C 1.52273 * 110.20092 * 83.42280 * 14 13 12 17 17 C 1.53313 * 109.41666 * 182.19843 * 16 14 13 18 18 N 1.46932 * 108.70738 * 306.48926 * 17 16 14 19 19 C 1.36933 * 120.56305 * 234.21223 * 18 17 16 20 20 H 1.07999 * 119.99967 * 163.81966 * 19 18 17 21 21 C 1.38808 * 120.00114 * 343.80915 * 19 18 17 22 22 N 1.31613 * 120.00289 * 327.52940 * 21 19 18 23 23 Si 1.86805 * 119.99716 * 147.52560 * 21 19 18 24 24 H 1.48504 * 109.46959 * 95.00268 * 23 21 19 25 25 H 1.48505 * 109.47105 * 215.00131 * 23 21 19 26 26 H 1.48497 * 109.47265 * 335.00250 * 23 21 19 27 27 C 1.46935 * 118.87008 * 54.23705 * 18 17 16 28 28 C 1.52272 * 110.20758 * 206.60609 * 14 13 12 29 29 H 1.08999 * 109.47143 * 85.74709 * 1 2 3 30 30 H 1.08999 * 109.47543 * 205.75697 * 1 2 3 31 31 H 1.09008 * 109.46774 * 325.75327 * 1 2 3 32 32 H 1.07996 * 120.36782 * 0.02562 * 3 2 1 33 33 H 0.96701 * 113.99923 * 89.99414 * 5 4 3 34 34 H 1.07995 * 119.69188 * 180.29305 * 7 6 4 35 35 H 1.08989 * 110.35767 * 274.88204 * 12 11 9 36 36 H 1.09000 * 110.35008 * 37.16742 * 12 11 9 37 37 H 1.08997 * 111.20539 * 278.57569 * 13 12 11 38 38 H 1.09000 * 110.94544 * 154.65308 * 13 12 11 39 39 H 1.09001 * 109.90404 * 300.83134 * 15 11 9 40 40 H 1.08987 * 109.91497 * 61.91306 * 15 11 9 41 41 H 1.08996 * 109.48221 * 302.17778 * 16 14 13 42 42 H 1.08996 * 109.48380 * 62.21542 * 16 14 13 43 43 H 1.08998 * 109.59943 * 186.72273 * 17 16 14 44 44 H 1.09002 * 109.59925 * 66.25509 * 17 16 14 45 45 H 0.97005 * 120.00369 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.59970 * 185.98978 * 27 18 17 47 47 H 1.09004 * 109.72836 * 65.59646 * 27 18 17 48 48 H 1.08998 * 109.48449 * 297.77924 * 28 14 13 49 49 H 1.09006 * 109.47995 * 57.79700 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1472 -0.0005 5 8 4.3045 2.3075 -0.0011 6 7 4.2548 -0.0068 -0.0062 7 6 3.6205 -1.1602 -0.0011 8 6 2.2255 -1.2045 -0.0006 9 6 1.5170 -2.4995 -0.0011 10 8 0.4812 -2.6254 -0.6252 11 7 2.0184 -3.5422 0.6901 12 6 3.2039 -3.5026 1.5665 13 6 3.0027 -4.6792 2.5589 14 6 2.3488 -5.7411 1.6465 15 6 1.4775 -4.9109 0.6906 16 6 3.4184 -6.5014 0.8742 17 6 2.7483 -7.5112 -0.0647 18 7 1.8320 -8.3491 0.7209 19 6 1.9335 -9.7142 0.6857 20 1 1.4494 -10.3114 1.4442 21 6 2.6583 -10.3304 -0.3251 22 7 2.7047 -9.7908 -1.5246 23 14 3.5680 -11.9257 0.0172 24 1 2.7158 -13.0760 -0.3776 25 1 4.8302 -11.9534 -0.7646 26 1 3.8811 -12.0159 1.4660 27 6 0.8046 -7.6972 1.5446 28 6 1.4875 -6.6864 2.4732 29 1 -0.3633 0.0762 -1.0248 30 1 -0.3634 -0.9255 0.4466 31 1 -0.3633 0.8496 0.5784 32 1 1.6937 2.1313 0.0004 33 1 4.5078 2.6446 0.8822 34 1 4.1847 -2.0810 -0.0012 35 1 4.1124 -3.6475 0.9821 36 1 3.2457 -2.5558 2.1051 37 1 2.3345 -4.3985 3.3730 38 1 3.9593 -5.0312 2.9450 39 1 0.4457 -4.9021 1.0420 40 1 1.5234 -5.3286 -0.3150 41 1 4.0122 -5.7994 0.2887 42 1 4.0657 -7.0298 1.5740 43 1 3.5087 -8.1382 -0.5302 44 1 2.1885 -6.9795 -0.8342 45 1 3.2116 -10.2212 -2.2309 46 1 0.2835 -8.4468 2.1402 47 1 0.0915 -7.1801 0.9024 48 1 2.1147 -7.2169 3.1897 49 1 0.7295 -6.1138 3.0078 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040846155.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:45 Heat of formation + Delta-G solvation = -31.930520 kcal Electronic energy + Delta-G solvation = -31115.379265 eV Core-core repulsion = 27042.459352 eV Total energy + Delta-G solvation = -4072.919913 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.17567 -41.18624 -39.76116 -38.03256 -37.49497 -35.05816 -34.74697 -32.98879 -31.70706 -31.57645 -30.62862 -29.15074 -27.99251 -26.52959 -25.26495 -24.15269 -23.81857 -23.36649 -22.21536 -20.94855 -19.73964 -19.44455 -18.83939 -18.41652 -17.84075 -17.29872 -16.91499 -16.79661 -16.57768 -15.77287 -15.63567 -15.44418 -15.38823 -14.87364 -14.79949 -14.62155 -14.40656 -14.21553 -14.01722 -13.80682 -13.73888 -13.63925 -13.24305 -13.15910 -13.09015 -13.02843 -12.73617 -12.72158 -12.52385 -12.32265 -12.18251 -11.92759 -11.73444 -11.51300 -11.27281 -11.08980 -10.98951 -10.70144 -10.51007 -10.38662 -10.10814 -9.71132 -8.81683 -7.91690 -5.15128 -0.50842 0.02958 1.45537 1.50040 1.55363 1.60014 1.82528 2.44072 2.54248 2.59872 3.17795 3.27633 3.45102 3.54405 3.60207 3.66740 3.72511 3.82320 3.91188 4.16173 4.22891 4.23851 4.32793 4.44021 4.53653 4.55862 4.58451 4.65293 4.66407 4.67699 4.72234 4.75560 4.87745 4.93286 4.99861 5.03290 5.08425 5.15958 5.20799 5.27491 5.35272 5.36779 5.38249 5.42027 5.54221 5.67022 5.78447 6.32798 6.40311 6.52101 6.75949 6.96503 7.12792 7.89936 8.37654 9.15829 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020939 B = 0.002518 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.926134 B =11117.185481 C =11415.852393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.022 3.978 3 C -0.185 4.185 4 C 0.333 3.667 5 O -0.486 6.486 6 N -0.529 5.529 7 C 0.165 3.835 8 C -0.208 4.208 9 C 0.574 3.426 10 O -0.571 6.571 11 N -0.607 5.607 12 C 0.092 3.908 13 C -0.112 4.112 14 C -0.053 4.053 15 C 0.125 3.875 16 C -0.110 4.110 17 C 0.167 3.833 18 N -0.608 5.608 19 C -0.261 4.261 20 H 0.071 0.929 21 C -0.051 4.051 22 N -0.926 5.926 23 Si 0.950 3.050 24 H -0.291 1.291 25 H -0.294 1.294 26 H -0.269 1.269 27 C 0.137 3.863 28 C -0.104 4.104 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.177 0.823 33 H 0.427 0.573 34 H 0.178 0.822 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.060 0.940 40 H 0.041 0.959 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.057 0.943 44 H -0.012 1.012 45 H 0.249 0.751 46 H 0.054 0.946 47 H 0.006 0.994 48 H 0.072 0.928 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.153 24.969 11.645 27.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.014 3.986 3 C -0.206 4.206 4 C 0.155 3.845 5 O -0.298 6.298 6 N -0.249 5.249 7 C 0.007 3.993 8 C -0.214 4.214 9 C 0.363 3.637 10 O -0.452 6.452 11 N -0.339 5.339 12 C -0.029 4.029 13 C -0.150 4.150 14 C -0.054 4.054 15 C 0.003 3.997 16 C -0.149 4.149 17 C 0.041 3.959 18 N -0.331 5.331 19 C -0.390 4.390 20 H 0.089 0.911 21 C -0.247 4.247 22 N -0.572 5.572 23 Si 0.778 3.222 24 H -0.218 1.218 25 H -0.220 1.220 26 H -0.194 1.194 27 C 0.011 3.989 28 C -0.143 4.143 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.121 0.879 32 H 0.195 0.805 33 H 0.290 0.710 34 H 0.194 0.806 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.006 0.994 45 H 0.058 0.942 46 H 0.072 0.928 47 H 0.024 0.976 48 H 0.090 0.910 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.517 24.953 10.574 27.217 hybrid contribution -0.555 -1.359 -0.397 1.520 sum 1.962 23.594 10.177 25.770 Atomic orbital electron populations 1.20945 0.88415 1.04034 1.03926 1.20499 0.97961 0.90761 0.89385 1.22146 0.93305 0.99976 1.05159 1.19578 0.87671 0.85358 0.91903 1.84684 1.75706 1.33155 1.36245 1.67256 1.42422 0.98730 1.16451 1.23040 0.89860 0.95824 0.90574 1.20750 0.95680 0.93476 1.11452 1.17936 0.83876 0.83290 0.78554 1.90782 1.25066 1.84146 1.45174 1.48562 1.30549 1.08890 1.45914 1.22860 0.87366 1.00907 0.91805 1.22905 1.02875 0.92600 0.96579 1.20897 0.95192 0.94488 0.94819 1.21920 0.97635 0.80609 0.99567 1.21843 0.97006 0.97352 0.98702 1.20770 0.92544 0.91294 0.91296 1.44477 1.34435 1.01976 1.52214 1.19508 1.29587 0.83375 1.06579 0.91073 1.25388 1.04225 1.01038 0.94021 1.70368 1.43039 1.43224 1.00610 0.85531 0.78537 0.80167 0.77959 1.21842 1.21990 1.19395 1.21105 0.90366 0.94769 0.92630 1.21770 0.98906 0.96452 0.97191 0.89862 0.92030 0.87879 0.80529 0.71045 0.80571 0.89685 0.88476 0.88980 0.87574 0.92211 0.94042 0.91585 0.91556 0.92431 0.99407 0.94207 0.92753 0.97591 0.90956 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.06 9.10 71.23 0.65 -1.41 16 2 C 0.02 0.42 5.94 -19.43 -0.12 0.31 16 3 C -0.19 -2.73 9.74 22.43 0.22 -2.51 16 4 C 0.33 5.72 7.74 84.82 0.66 6.38 16 5 O -0.49 -6.32 13.55 -87.96 -1.19 -7.51 16 6 N -0.53 -11.09 10.37 -307.80 -3.19 -14.28 16 7 C 0.17 3.40 9.35 85.04 0.80 4.19 16 8 C -0.21 -4.77 5.43 -19.99 -0.11 -4.88 16 9 C 0.57 16.64 6.98 86.72 0.61 17.25 16 10 O -0.57 -20.93 15.12 -3.98 -0.06 -20.99 16 11 N -0.61 -15.98 3.33 -815.51 -2.72 -18.70 16 12 C 0.09 1.66 4.90 86.96 0.43 2.08 16 13 C -0.11 -2.04 6.00 31.88 0.19 -1.84 16 14 C -0.05 -1.48 0.53 -51.91 -0.03 -1.50 16 15 C 0.13 3.95 5.06 86.49 0.44 4.39 16 16 C -0.11 -3.72 4.78 30.46 0.15 -3.58 16 17 C 0.17 7.86 5.28 86.40 0.46 8.31 16 18 N -0.61 -29.86 3.02 -698.59 -2.11 -31.97 16 19 C -0.26 -14.26 9.59 84.03 0.81 -13.46 16 20 H 0.07 3.80 7.92 -2.91 -0.02 3.77 16 21 C -0.05 -2.88 4.62 84.86 0.39 -2.48 16 22 N -0.93 -55.48 11.40 21.65 0.25 -55.23 16 23 Si 0.95 44.67 29.66 68.60 2.03 46.70 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 27 C 0.14 5.45 6.24 86.40 0.54 5.99 16 28 C -0.10 -3.05 4.70 30.46 0.14 -2.91 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.06 1.40 6.22 -2.39 -0.01 1.39 16 31 H 0.10 1.10 8.13 -2.38 -0.02 1.08 16 32 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.43 0.82 9.06 -74.06 -0.67 0.15 16 34 H 0.18 3.15 5.73 -2.91 -0.02 3.14 16 35 H 0.09 1.37 6.53 -2.39 -0.02 1.36 16 36 H 0.10 1.35 7.25 -2.39 -0.02 1.33 16 37 H 0.09 1.43 8.01 -2.39 -0.02 1.41 16 38 H 0.11 1.59 8.01 -2.39 -0.02 1.57 16 39 H 0.06 1.97 7.59 -2.39 -0.02 1.95 16 40 H 0.04 1.64 6.08 -2.39 -0.01 1.62 16 41 H 0.07 2.01 7.47 -2.39 -0.02 1.99 16 42 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.06 3.13 5.63 -2.39 -0.01 3.11 16 44 H -0.01 -0.62 6.53 -2.39 -0.02 -0.64 16 45 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 46 H 0.05 2.13 7.87 -2.39 -0.02 2.11 16 47 H 0.01 0.26 7.48 -2.38 -0.02 0.24 16 48 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.08 1.97 8.10 -2.38 -0.02 1.95 16 Total: -1.00 -76.22 378.14 -0.46 -76.68 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 0.32 Total: 10.98 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 6.21 Total: 14.31 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -7.77 Total: -120.17 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -1.25 Total: -28.50 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -76.22 -0.46 -76.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040846155.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.746 kcal (2) G-P(sol) polarization free energy of solvation -76.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds