Wall clock time and date at job start Wed Apr 1 2020 06:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34865 * 119.10319 * 2 1 4 4 C 1.41662 * 119.34330 * 179.97438 * 3 2 1 5 5 O 1.22089 * 121.06951 * 180.02562 * 4 3 2 6 6 C 1.47098 * 117.86493 * 0.04460 * 4 3 2 7 7 C 1.47288 * 120.88325 * 180.25329 * 6 4 3 8 8 O 1.21616 * 119.99972 * 317.60328 * 7 6 4 9 9 N 1.34774 * 119.99846 * 137.61005 * 7 6 4 10 10 C 1.47165 * 125.59635 * 354.56896 * 9 7 6 11 11 C 1.54661 * 107.34903 * 180.88361 * 10 9 7 12 12 C 1.53299 * 102.72000 * 20.51143 * 11 10 9 13 13 C 1.53313 * 112.22693 * 88.17295 * 12 11 10 14 14 C 1.54649 * 102.71905 * 155.00493 * 13 12 11 15 15 N 1.47169 * 107.35168 * 339.49061 * 14 13 12 16 16 C 1.36945 * 125.59052 * 179.12295 * 15 14 13 17 17 H 1.08005 * 119.99382 * 185.97418 * 16 15 14 18 18 C 1.38808 * 120.00266 * 5.97062 * 16 15 14 19 19 N 1.31615 * 119.99831 * 6.64967 * 18 16 15 20 20 Si 1.86797 * 119.99784 * 186.65128 * 18 16 15 21 21 H 1.48499 * 109.47284 * 94.99141 * 20 18 16 22 22 H 1.48503 * 109.46974 * 214.99073 * 20 18 16 23 23 H 1.48502 * 109.47442 * 334.98672 * 20 18 16 24 24 C 1.47789 * 108.81359 * 359.10259 * 15 14 13 25 25 C 1.47793 * 125.59103 * 174.26298 * 9 7 6 26 26 C 1.37991 * 118.23630 * 359.97438 * 6 4 3 27 27 N 1.34351 * 120.36997 * 0.02562 * 26 6 4 28 28 C 1.46498 * 118.80343 * 179.97438 * 27 26 6 29 29 H 1.09005 * 109.47148 * 269.86946 * 1 2 3 30 30 H 1.08996 * 109.47152 * 29.87118 * 1 2 3 31 31 H 1.09001 * 109.47260 * 149.86848 * 1 2 3 32 32 H 1.08002 * 120.32627 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.86573 * 300.32716 * 10 9 7 34 34 H 1.09001 * 109.87024 * 61.44555 * 10 9 7 35 35 H 1.09004 * 110.76181 * 138.81411 * 11 10 9 36 36 H 1.08998 * 110.76740 * 262.01333 * 11 10 9 37 37 H 1.09007 * 110.75930 * 273.31273 * 13 12 11 38 38 H 1.09000 * 110.75939 * 36.50760 * 13 12 11 39 39 H 1.09000 * 109.87055 * 98.93422 * 14 13 12 40 40 H 1.09001 * 109.87178 * 219.91267 * 14 13 12 41 41 H 0.97001 * 119.99782 * 180.02562 * 19 18 16 42 42 H 1.09000 * 110.39747 * 263.37156 * 24 15 14 43 43 H 1.08996 * 110.39694 * 140.95921 * 24 15 14 44 44 H 1.08999 * 110.39841 * 276.63862 * 25 9 7 45 45 H 1.09004 * 110.40069 * 39.05229 * 25 9 7 46 46 H 1.07999 * 119.81668 * 179.97438 * 26 6 4 47 47 H 1.09000 * 109.46987 * 96.90977 * 28 27 26 48 48 H 1.09004 * 109.46884 * 216.90726 * 28 27 26 49 49 H 1.08996 * 109.47413 * 336.90658 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5795 1.1843 0.0006 5 8 4.2052 2.2327 0.0010 6 6 4.2725 -0.1132 0.0001 7 6 5.7436 -0.1846 0.0062 8 8 6.3917 0.5647 -0.6992 9 7 6.3715 -1.0804 0.7934 10 6 5.7204 -1.9642 1.7737 11 6 6.8321 -2.7972 2.4534 12 6 8.0905 -1.9640 2.1846 13 6 8.3316 -0.9102 3.2717 14 6 9.8581 -0.6773 3.1876 15 7 10.4451 -1.8509 2.5214 16 6 11.7738 -2.0257 2.2395 17 1 12.0953 -2.8793 1.6610 18 6 12.7073 -1.1059 2.6971 19 7 12.3354 -0.1397 3.5097 20 14 14.4912 -1.2396 2.1595 21 1 14.7223 -0.3580 0.9870 22 1 15.3772 -0.8213 3.2755 23 1 14.7926 -2.6456 1.7887 24 6 9.3656 -2.8101 2.2070 25 6 7.8262 -1.3409 0.8094 26 6 3.5077 -1.2618 -0.0003 27 7 2.1664 -1.1847 -0.0008 28 6 1.3881 -2.4258 -0.0018 29 1 -0.3634 -0.0023 1.0277 30 1 -0.3633 0.8911 -0.5118 31 1 -0.3634 -0.8888 -0.5159 32 1 1.6136 2.1083 -0.0004 33 1 5.1961 -1.3671 2.5198 34 1 5.0187 -2.6265 1.2666 35 1 6.6487 -2.8854 3.5243 36 1 6.9122 -3.7825 1.9943 37 1 7.7877 0.0075 3.0477 38 1 8.0500 -1.2950 4.2519 39 1 10.0642 0.2209 2.6053 40 1 10.2727 -0.5719 4.1901 41 1 12.9877 0.5032 3.8292 42 1 9.3003 -3.5754 2.9805 43 1 9.5356 -3.2672 1.2323 44 1 8.0962 -2.0374 0.0156 45 1 8.3804 -0.4083 0.7026 46 1 3.9900 -2.2281 -0.0011 47 1 1.0899 -2.6685 1.0182 48 1 0.4991 -2.2967 -0.6192 49 1 1.9960 -3.2357 -0.4050 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041383947.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:42:34 Heat of formation + Delta-G solvation = 11.706891 kcal Electronic energy + Delta-G solvation = -30945.275335 eV Core-core repulsion = 26874.247682 eV Total energy + Delta-G solvation = -4071.027653 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.52461 -40.04488 -38.44075 -37.61237 -35.57308 -33.85207 -33.04225 -32.37026 -30.55219 -29.18105 -28.82080 -28.02694 -27.29296 -25.62080 -24.64387 -23.69064 -22.39571 -21.92662 -20.21330 -19.84534 -18.85986 -18.03504 -17.55950 -16.79955 -16.61464 -16.43340 -15.97080 -15.45759 -15.11975 -14.75758 -14.50126 -14.29704 -14.18666 -13.97297 -13.78892 -13.62767 -13.49152 -13.44298 -13.02960 -12.85530 -12.77020 -12.36009 -12.32277 -12.20160 -11.95351 -11.86214 -11.66184 -11.31217 -11.16587 -10.80294 -10.71906 -10.20947 -10.00495 -9.95924 -9.84181 -9.74739 -9.69866 -9.53278 -9.30118 -8.54005 -8.42450 -8.14731 -6.75318 -5.63004 -2.98687 0.70556 1.04274 1.99186 2.89796 3.14568 3.46159 3.50953 3.53069 3.66495 3.71842 4.01769 4.15025 4.31202 4.41502 4.54726 4.58512 4.67005 4.70862 4.79269 4.84448 4.90394 4.95856 5.10134 5.21625 5.30876 5.40384 5.42547 5.49808 5.52938 5.57700 5.87885 5.92377 5.95408 6.02507 6.04941 6.21887 6.26232 6.27129 6.39729 6.46995 6.48004 6.58039 6.68798 6.78048 6.84870 7.59695 7.72540 7.73671 7.90339 8.03435 8.33432 8.44198 9.28003 9.89030 10.55073 11.47227 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022393 B = 0.002501 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.079306 B =11194.273347 C =11790.308015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.156 3.844 3 C -0.270 4.270 4 C 0.409 3.591 5 O -0.488 6.488 6 C -0.285 4.285 7 C 0.592 3.408 8 O -0.514 6.514 9 N -0.620 5.620 10 C 0.104 3.896 11 C -0.116 4.116 12 C -0.083 4.083 13 C -0.128 4.128 14 C 0.174 3.826 15 N -0.604 5.604 16 C -0.229 4.229 17 H 0.077 0.923 18 C -0.008 4.008 19 N -0.919 5.919 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.281 1.281 24 C 0.152 3.848 25 C 0.132 3.868 26 C 0.162 3.838 27 N -0.473 5.473 28 C 0.049 3.951 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.152 0.848 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.031 0.969 40 H 0.058 0.942 41 H 0.252 0.748 42 H 0.024 0.976 43 H 0.040 0.960 44 H 0.067 0.933 45 H 0.085 0.915 46 H 0.171 0.829 47 H 0.083 0.917 48 H 0.093 0.907 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.237 -9.659 -4.433 32.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.050 3.950 3 C -0.295 4.295 4 C 0.295 3.705 5 O -0.370 6.370 6 C -0.296 4.296 7 C 0.379 3.621 8 O -0.389 6.389 9 N -0.355 5.355 10 C -0.019 4.019 11 C -0.155 4.155 12 C -0.085 4.085 13 C -0.166 4.166 14 C 0.050 3.950 15 N -0.330 5.330 16 C -0.357 4.357 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.566 5.566 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.026 3.974 25 C 0.011 3.989 26 C 0.033 3.967 27 N -0.160 5.160 28 C -0.092 4.092 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.170 0.830 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.041 0.959 43 H 0.058 0.942 44 H 0.085 0.915 45 H 0.104 0.896 46 H 0.188 0.812 47 H 0.101 0.899 48 H 0.111 0.889 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -30.499 -8.667 -4.827 32.072 hybrid contribution 0.880 -0.184 -0.176 0.916 sum -29.619 -8.852 -5.003 31.316 Atomic orbital electron populations 1.21201 0.88076 1.04868 1.04329 1.20256 0.94819 0.85012 0.94935 1.22217 0.96145 0.97250 1.13844 1.18163 0.88358 0.87719 0.76215 1.90829 1.70035 1.33368 1.42777 1.22481 0.94331 0.95230 1.17584 1.17097 0.85766 0.79391 0.79805 1.90837 1.66663 1.39870 1.41500 1.48618 1.09034 1.38651 1.39242 1.22173 0.95997 0.92416 0.91357 1.22413 0.93751 0.98203 1.01086 1.21630 0.95074 0.96833 0.94942 1.22635 1.00348 0.97267 0.96393 1.21261 0.85700 0.89682 0.98395 1.44588 1.02317 1.16526 1.69607 1.19035 0.80997 1.07984 1.27680 0.90504 1.24809 0.98056 0.98237 0.99342 1.69963 1.32937 1.17955 1.35738 0.86120 0.84658 0.77428 0.77674 1.21638 1.21827 1.20668 1.21200 0.86352 0.92000 0.97878 1.21993 0.79098 1.01511 0.96330 1.22314 0.81886 1.00073 0.92398 1.42543 1.05249 1.07112 1.61134 1.22529 0.97786 0.84395 1.04478 0.89201 0.88892 0.90190 0.83028 0.91597 0.92591 0.89892 0.90503 0.92170 0.92122 0.95058 0.92367 0.93786 0.95864 0.94211 0.91492 0.89629 0.81171 0.89864 0.88873 0.88879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.25 9.45 36.00 0.34 0.09 16 2 C 0.16 0.98 6.64 -82.13 -0.55 0.44 16 3 C -0.27 -2.83 9.57 -39.47 -0.38 -3.21 16 4 C 0.41 6.54 6.94 -34.68 -0.24 6.30 16 5 O -0.49 -10.43 17.13 -3.60 -0.06 -10.49 16 6 C -0.29 -4.04 5.60 -102.72 -0.58 -4.62 16 7 C 0.59 10.69 7.31 -12.58 -0.09 10.60 16 8 O -0.51 -12.01 16.79 -3.18 -0.05 -12.06 16 9 N -0.62 -9.69 3.34 -172.23 -0.58 -10.26 16 10 C 0.10 1.13 5.86 -2.81 -0.02 1.12 16 11 C -0.12 -1.37 5.97 -25.70 -0.15 -1.52 16 12 C -0.08 -1.41 0.62 -154.03 -0.10 -1.50 16 13 C -0.13 -2.47 5.92 -25.70 -0.15 -2.63 16 14 C 0.17 4.38 5.42 -2.81 -0.02 4.36 16 15 N -0.60 -15.56 3.41 -170.60 -0.58 -16.14 16 16 C -0.23 -6.48 10.26 -15.06 -0.15 -6.63 16 17 H 0.08 2.09 7.84 -52.48 -0.41 1.68 16 18 C -0.01 -0.23 5.45 -17.43 -0.10 -0.33 16 19 N -0.92 -27.90 10.44 55.49 0.58 -27.32 16 20 Si 0.91 22.79 29.56 -169.99 -5.02 17.76 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 C 0.15 3.05 6.28 -3.31 -0.02 3.03 16 25 C 0.13 2.37 5.89 -3.19 -0.02 2.35 16 26 C 0.16 1.34 8.71 -16.54 -0.14 1.19 16 27 N -0.47 -2.55 2.97 -119.75 -0.36 -2.90 16 28 C 0.05 0.03 9.95 59.85 0.60 0.62 16 29 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 30 H 0.09 0.16 8.05 -51.93 -0.42 -0.26 16 31 H 0.08 -0.01 5.77 -51.93 -0.30 -0.31 16 32 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.40 5.62 -51.93 -0.29 0.11 16 35 H 0.08 0.89 7.78 -51.93 -0.40 0.49 16 36 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 37 H 0.06 1.18 8.01 -51.93 -0.42 0.76 16 38 H 0.06 1.06 7.82 -51.93 -0.41 0.66 16 39 H 0.03 0.89 7.88 -51.93 -0.41 0.48 16 40 H 0.06 1.62 7.01 -51.93 -0.36 1.26 16 41 H 0.25 7.44 8.31 -40.82 -0.34 7.11 16 42 H 0.02 0.46 8.07 -51.93 -0.42 0.04 16 43 H 0.04 0.77 7.80 -51.93 -0.41 0.37 16 44 H 0.07 1.15 7.85 -51.93 -0.41 0.74 16 45 H 0.09 1.88 7.91 -51.93 -0.41 1.47 16 46 H 0.17 0.93 5.75 -52.49 -0.30 0.63 16 47 H 0.08 -0.05 8.14 -51.93 -0.42 -0.48 16 48 H 0.09 -0.10 5.92 -51.93 -0.31 -0.41 16 49 H 0.09 -0.06 7.84 -51.93 -0.41 -0.47 16 LS Contribution 386.62 15.07 5.83 5.83 Total: -1.00 -41.70 386.62 -9.33 -51.03 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -7.32 Total: -5.10 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: -1.76 Total: 9.67 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.93 Total: -56.63 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.12 Total: -22.55 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -41.70 -9.33 -51.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041383947.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.737 kcal (2) G-P(sol) polarization free energy of solvation -41.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds