Wall clock time and date at job start Wed Apr 1 2020 06:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34865 * 119.10319 * 2 1 4 4 C 1.41662 * 119.34330 * 179.97438 * 3 2 1 5 5 O 1.22089 * 121.06951 * 180.02562 * 4 3 2 6 6 C 1.47098 * 117.86493 * 0.04460 * 4 3 2 7 7 C 1.47288 * 120.88325 * 180.25329 * 6 4 3 8 8 O 1.21616 * 119.99972 * 317.60328 * 7 6 4 9 9 N 1.34774 * 119.99846 * 137.61005 * 7 6 4 10 10 C 1.47165 * 125.59635 * 354.56896 * 9 7 6 11 11 C 1.54661 * 107.34903 * 180.88361 * 10 9 7 12 12 C 1.53299 * 102.72000 * 20.51143 * 11 10 9 13 13 C 1.53313 * 112.22693 * 88.17295 * 12 11 10 14 14 C 1.54649 * 102.71905 * 155.00493 * 13 12 11 15 15 N 1.47169 * 107.35168 * 339.49061 * 14 13 12 16 16 C 1.36945 * 125.59052 * 179.12295 * 15 14 13 17 17 H 1.08005 * 119.99382 * 185.97418 * 16 15 14 18 18 C 1.38808 * 120.00266 * 5.97062 * 16 15 14 19 19 N 1.31615 * 119.99831 * 6.64967 * 18 16 15 20 20 Si 1.86797 * 119.99784 * 186.65128 * 18 16 15 21 21 H 1.48499 * 109.47284 * 94.99141 * 20 18 16 22 22 H 1.48503 * 109.46974 * 214.99073 * 20 18 16 23 23 H 1.48502 * 109.47442 * 334.98672 * 20 18 16 24 24 C 1.47789 * 108.81359 * 359.10259 * 15 14 13 25 25 C 1.47793 * 125.59103 * 174.26298 * 9 7 6 26 26 C 1.37991 * 118.23630 * 359.97438 * 6 4 3 27 27 N 1.34351 * 120.36997 * 0.02562 * 26 6 4 28 28 C 1.46498 * 118.80343 * 179.97438 * 27 26 6 29 29 H 1.09005 * 109.47148 * 269.86946 * 1 2 3 30 30 H 1.08996 * 109.47152 * 29.87118 * 1 2 3 31 31 H 1.09001 * 109.47260 * 149.86848 * 1 2 3 32 32 H 1.08002 * 120.32627 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.86573 * 300.32716 * 10 9 7 34 34 H 1.09001 * 109.87024 * 61.44555 * 10 9 7 35 35 H 1.09004 * 110.76181 * 138.81411 * 11 10 9 36 36 H 1.08998 * 110.76740 * 262.01333 * 11 10 9 37 37 H 1.09007 * 110.75930 * 273.31273 * 13 12 11 38 38 H 1.09000 * 110.75939 * 36.50760 * 13 12 11 39 39 H 1.09000 * 109.87055 * 98.93422 * 14 13 12 40 40 H 1.09001 * 109.87178 * 219.91267 * 14 13 12 41 41 H 0.97001 * 119.99782 * 180.02562 * 19 18 16 42 42 H 1.09000 * 110.39747 * 263.37156 * 24 15 14 43 43 H 1.08996 * 110.39694 * 140.95921 * 24 15 14 44 44 H 1.08999 * 110.39841 * 276.63862 * 25 9 7 45 45 H 1.09004 * 110.40069 * 39.05229 * 25 9 7 46 46 H 1.07999 * 119.81668 * 179.97438 * 26 6 4 47 47 H 1.09000 * 109.46987 * 96.90977 * 28 27 26 48 48 H 1.09004 * 109.46884 * 216.90726 * 28 27 26 49 49 H 1.08996 * 109.47413 * 336.90658 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5795 1.1843 0.0006 5 8 4.2052 2.2327 0.0010 6 6 4.2725 -0.1132 0.0001 7 6 5.7436 -0.1846 0.0062 8 8 6.3917 0.5647 -0.6992 9 7 6.3715 -1.0804 0.7934 10 6 5.7204 -1.9642 1.7737 11 6 6.8321 -2.7972 2.4534 12 6 8.0905 -1.9640 2.1846 13 6 8.3316 -0.9102 3.2717 14 6 9.8581 -0.6773 3.1876 15 7 10.4451 -1.8509 2.5214 16 6 11.7738 -2.0257 2.2395 17 1 12.0953 -2.8793 1.6610 18 6 12.7073 -1.1059 2.6971 19 7 12.3354 -0.1397 3.5097 20 14 14.4912 -1.2396 2.1595 21 1 14.7223 -0.3580 0.9870 22 1 15.3772 -0.8213 3.2755 23 1 14.7926 -2.6456 1.7887 24 6 9.3656 -2.8101 2.2070 25 6 7.8262 -1.3409 0.8094 26 6 3.5077 -1.2618 -0.0003 27 7 2.1664 -1.1847 -0.0008 28 6 1.3881 -2.4258 -0.0018 29 1 -0.3634 -0.0023 1.0277 30 1 -0.3633 0.8911 -0.5118 31 1 -0.3634 -0.8888 -0.5159 32 1 1.6136 2.1083 -0.0004 33 1 5.1961 -1.3671 2.5198 34 1 5.0187 -2.6265 1.2666 35 1 6.6487 -2.8854 3.5243 36 1 6.9122 -3.7825 1.9943 37 1 7.7877 0.0075 3.0477 38 1 8.0500 -1.2950 4.2519 39 1 10.0642 0.2209 2.6053 40 1 10.2727 -0.5719 4.1901 41 1 12.9877 0.5032 3.8292 42 1 9.3003 -3.5754 2.9805 43 1 9.5356 -3.2672 1.2323 44 1 8.0962 -2.0374 0.0156 45 1 8.3804 -0.4083 0.7026 46 1 3.9900 -2.2281 -0.0011 47 1 1.0899 -2.6685 1.0182 48 1 0.4991 -2.2967 -0.6192 49 1 1.9960 -3.2357 -0.4050 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041383947.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:42:32 Heat of formation + Delta-G solvation = -19.943815 kcal Electronic energy + Delta-G solvation = -30946.647812 eV Core-core repulsion = 26874.247682 eV Total energy + Delta-G solvation = -4072.400130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.30830 -41.30172 -39.72330 -38.86537 -37.18378 -34.79071 -34.19905 -33.60531 -32.08271 -30.73848 -30.02261 -29.08671 -27.68941 -27.19510 -25.97260 -24.96035 -23.57546 -22.73459 -22.17113 -20.85002 -20.29038 -19.03338 -18.79301 -18.27171 -17.48740 -17.25038 -16.81122 -16.73110 -16.62671 -16.29743 -15.95877 -15.61355 -15.38449 -15.04661 -14.78385 -14.62001 -14.35999 -14.19485 -13.92877 -13.84132 -13.82027 -13.71737 -13.45833 -13.30986 -13.07835 -12.98643 -12.79291 -12.65141 -12.59789 -12.49400 -12.39221 -12.02216 -11.87142 -11.54613 -11.44008 -11.29991 -11.17341 -10.74228 -10.47713 -10.44241 -9.68341 -9.05920 -8.89139 -7.84544 -5.22037 -0.13866 0.30698 1.42015 1.44478 1.46124 1.53992 1.64422 1.99976 2.48535 2.66790 3.22795 3.30509 3.39656 3.50065 3.57718 3.66341 3.70665 3.78888 3.80967 4.13637 4.20185 4.25871 4.31692 4.40910 4.46213 4.51268 4.56822 4.63181 4.71285 4.75211 4.76116 4.76850 4.84944 4.91009 4.92369 4.99259 5.00252 5.06215 5.18859 5.22729 5.30363 5.37683 5.41110 5.44055 5.60703 5.73207 5.74993 5.80836 6.18946 6.51682 7.04155 7.07636 7.16493 7.77145 8.42111 9.24878 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022393 B = 0.002501 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.079306 B =11194.273347 C =11790.308015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.193 3.807 3 C -0.307 4.307 4 C 0.381 3.619 5 O -0.587 6.587 6 C -0.343 4.343 7 C 0.584 3.416 8 O -0.594 6.594 9 N -0.616 5.616 10 C 0.097 3.903 11 C -0.101 4.101 12 C -0.074 4.074 13 C -0.112 4.112 14 C 0.184 3.816 15 N -0.627 5.627 16 C -0.236 4.236 17 H 0.089 0.911 18 C -0.075 4.075 19 N -0.955 5.955 20 Si 0.977 3.023 21 H -0.296 1.296 22 H -0.294 1.294 23 H -0.259 1.259 24 C 0.149 3.851 25 C 0.134 3.866 26 C 0.218 3.782 27 N -0.453 5.453 28 C 0.031 3.969 29 H 0.113 0.887 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.153 0.847 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.047 0.953 38 H 0.090 0.910 39 H -0.025 1.025 40 H 0.023 0.977 41 H 0.244 0.756 42 H 0.048 0.952 43 H 0.049 0.951 44 H 0.076 0.924 45 H 0.022 0.978 46 H 0.215 0.785 47 H 0.111 0.889 48 H 0.119 0.881 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.591 -16.073 -4.225 40.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.085 3.915 3 C -0.331 4.331 4 C 0.276 3.724 5 O -0.477 6.477 6 C -0.354 4.354 7 C 0.375 3.625 8 O -0.475 6.475 9 N -0.349 5.349 10 C -0.024 4.024 11 C -0.139 4.139 12 C -0.075 4.075 13 C -0.150 4.150 14 C 0.059 3.941 15 N -0.353 5.353 16 C -0.365 4.365 17 H 0.106 0.894 18 C -0.267 4.267 19 N -0.604 5.604 20 Si 0.806 3.194 21 H -0.223 1.223 22 H -0.221 1.221 23 H -0.183 1.183 24 C 0.024 3.976 25 C 0.011 3.989 26 C 0.084 3.916 27 N -0.136 5.136 28 C -0.107 4.107 29 H 0.131 0.869 30 H 0.115 0.885 31 H 0.134 0.866 32 H 0.170 0.830 33 H 0.090 0.910 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.066 0.934 38 H 0.109 0.891 39 H -0.007 1.007 40 H 0.041 0.959 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.095 0.905 45 H 0.041 0.959 46 H 0.231 0.769 47 H 0.130 0.870 48 H 0.137 0.863 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -35.972 -15.225 -4.596 39.331 hybrid contribution 2.324 1.604 -0.265 2.836 sum -33.647 -13.621 -4.861 36.624 Atomic orbital electron populations 1.21433 0.83708 1.06891 1.06259 1.20838 0.97087 0.83854 0.89720 1.22045 0.93560 0.99709 1.17751 1.19025 0.90673 0.87552 0.75158 1.90767 1.71981 1.36033 1.48938 1.21979 0.92308 0.96730 1.24377 1.17825 0.87523 0.78349 0.78773 1.90774 1.68703 1.43015 1.44971 1.48651 1.07984 1.38853 1.39436 1.22584 0.96481 0.92356 0.90932 1.22478 0.89668 0.98547 1.03177 1.21511 0.96861 0.96194 0.92961 1.22445 0.95378 0.98102 0.99117 1.20937 0.89842 0.88119 0.95251 1.44905 1.02992 1.17860 1.69544 1.19518 0.82497 1.07829 1.26688 0.89369 1.25728 1.02522 0.98385 1.00085 1.70212 1.33821 1.18930 1.37444 0.85062 0.79526 0.78228 0.76590 1.22340 1.22119 1.18262 1.21475 0.85623 0.91687 0.98796 1.21779 0.80672 0.98757 0.97699 1.22671 0.82785 0.99320 0.86842 1.43241 1.04794 1.09069 1.56535 1.23173 0.98441 0.81876 1.07197 0.86924 0.88544 0.86599 0.82956 0.90958 0.86914 0.87517 0.86978 0.93440 0.89134 1.00711 0.95879 0.94694 0.93437 0.93234 0.90545 0.95915 0.76883 0.87044 0.86272 0.86365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.28 9.45 71.23 0.67 0.95 16 2 C 0.19 1.65 6.64 41.20 0.27 1.92 16 3 C -0.31 -6.52 9.57 22.34 0.21 -6.31 16 4 C 0.38 13.38 6.94 25.44 0.18 13.56 16 5 O -0.59 -28.97 17.13 2.46 0.04 -28.93 16 6 C -0.34 -9.86 5.60 -18.63 -0.10 -9.97 16 7 C 0.58 22.58 7.31 86.62 0.63 23.21 16 8 O -0.59 -31.31 16.79 3.99 0.07 -31.24 16 9 N -0.62 -19.16 3.34 -817.05 -2.73 -21.89 16 10 C 0.10 1.67 5.86 86.82 0.51 2.18 16 11 C -0.10 -1.81 5.97 31.26 0.19 -1.63 16 12 C -0.07 -2.40 0.62 -51.87 -0.03 -2.44 16 13 C -0.11 -4.44 5.92 31.26 0.19 -4.26 16 14 C 0.18 9.95 5.42 86.81 0.47 10.42 16 15 N -0.63 -33.37 3.41 -693.67 -2.37 -35.74 16 16 C -0.24 -13.75 10.26 84.03 0.86 -12.89 16 17 H 0.09 4.81 7.84 -2.91 -0.02 4.78 16 18 C -0.07 -4.52 5.45 84.86 0.46 -4.05 16 19 N -0.95 -61.87 10.44 21.65 0.23 -61.64 16 20 Si 0.98 48.55 29.56 68.60 2.03 50.58 16 21 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 22 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 23 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 24 C 0.15 5.74 6.28 86.15 0.54 6.28 16 25 C 0.13 4.98 5.89 86.22 0.51 5.49 16 26 C 0.22 2.57 8.71 84.25 0.73 3.30 16 27 N -0.45 -2.08 2.97 -532.77 -1.58 -3.66 16 28 C 0.03 -0.25 9.95 127.77 1.27 1.02 16 29 H 0.11 -0.54 8.14 -2.38 -0.02 -0.56 16 30 H 0.10 -0.12 8.05 -2.39 -0.02 -0.14 16 31 H 0.12 -0.99 5.77 -2.39 -0.01 -1.00 16 32 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.11 0.69 5.62 -2.39 -0.01 0.67 16 35 H 0.11 1.55 7.78 -2.38 -0.02 1.53 16 36 H 0.11 1.37 8.08 -2.39 -0.02 1.35 16 37 H 0.05 1.99 8.01 -2.38 -0.02 1.97 16 38 H 0.09 3.05 7.82 -2.39 -0.02 3.03 16 39 H -0.03 -1.62 7.88 -2.39 -0.02 -1.64 16 40 H 0.02 1.39 7.01 -2.39 -0.02 1.37 16 41 H 0.24 15.43 8.31 -92.71 -0.77 14.66 16 42 H 0.05 1.67 8.07 -2.39 -0.02 1.65 16 43 H 0.05 1.82 7.80 -2.39 -0.02 1.81 16 44 H 0.08 2.66 7.85 -2.39 -0.02 2.64 16 45 H 0.02 1.11 7.91 -2.38 -0.02 1.09 16 46 H 0.21 0.65 5.75 -2.91 -0.02 0.64 16 47 H 0.11 -1.25 8.14 -2.39 -0.02 -1.27 16 48 H 0.12 -1.39 5.92 -2.38 -0.01 -1.41 16 49 H 0.12 -1.33 7.84 -2.39 -0.02 -1.34 16 Total: -1.00 -115.06 386.62 4.21 -110.85 By element: Atomic # 1 Polarization: -6.09 SS G_CDS: 0.96 Total: -5.13 kcal Atomic # 6 Polarization: 19.23 SS G_CDS: 7.57 Total: 26.79 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -6.45 Total: -122.93 kcal Atomic # 8 Polarization: -60.28 SS G_CDS: 0.11 Total: -60.17 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.03 Total: 50.58 kcal Total: -115.06 4.21 -110.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041383947.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.904 kcal (2) G-P(sol) polarization free energy of solvation -115.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -110.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds