Wall clock time and date at job start Wed Apr 1 2020 06:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34851 * 119.10240 * 2 1 4 4 C 1.41680 * 119.33921 * 179.77696 * 3 2 1 5 5 O 1.22089 * 121.06690 * 180.21345 * 4 3 2 6 6 C 1.47096 * 117.85974 * 0.46006 * 4 3 2 7 7 C 1.47289 * 120.87878 * 179.77626 * 6 4 3 8 8 O 1.21619 * 120.00150 * 323.64343 * 7 6 4 9 9 N 1.34774 * 119.99983 * 143.64148 * 7 6 4 10 10 C 1.47563 * 125.67528 * 354.74961 * 9 7 6 11 11 C 1.55185 * 105.00731 * 203.85967 * 10 9 7 12 12 C 1.53722 * 101.43770 * 324.52664 * 11 10 9 13 13 C 1.53654 * 111.40304 * 272.72313 * 12 11 10 14 14 C 1.55184 * 101.42020 * 272.69973 * 13 12 11 15 15 N 1.47557 * 105.00597 * 324.50564 * 14 13 12 16 16 C 1.36940 * 125.67770 * 203.86032 * 15 14 13 17 17 H 1.08004 * 119.99961 * 179.97438 * 16 15 14 18 18 C 1.38812 * 119.99827 * 359.97438 * 16 15 14 19 19 N 1.31624 * 119.99817 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00051 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47057 * 89.99944 * 20 18 16 22 22 H 1.48497 * 109.47390 * 210.00023 * 20 18 16 23 23 H 1.48504 * 109.47396 * 330.00292 * 20 18 16 24 24 C 1.47410 * 108.65305 * 23.85876 * 15 14 13 25 25 C 1.47406 * 125.67450 * 174.75648 * 9 7 6 26 26 C 1.37991 * 118.23892 * 359.50305 * 6 4 3 27 27 N 1.34344 * 120.36952 * 0.26959 * 26 6 4 28 28 C 1.46500 * 118.80162 * 179.97438 * 27 26 6 29 29 H 1.09002 * 109.47528 * 263.97143 * 1 2 3 30 30 H 1.09000 * 109.47081 * 23.96667 * 1 2 3 31 31 H 1.08998 * 109.47464 * 143.97047 * 1 2 3 32 32 H 1.07998 * 120.33219 * 359.97438 * 3 2 1 33 33 H 1.08997 * 110.33468 * 322.74222 * 10 9 7 34 34 H 1.09000 * 110.33399 * 84.87573 * 10 9 7 35 35 H 1.08997 * 111.03466 * 82.53803 * 11 10 9 36 36 H 1.08998 * 111.03257 * 206.42753 * 11 10 9 37 37 H 1.09005 * 111.03947 * 30.73426 * 13 12 11 38 38 H 1.08995 * 111.03863 * 154.66470 * 13 12 11 39 39 H 1.08993 * 110.33788 * 205.62237 * 14 13 12 40 40 H 1.09001 * 110.42031 * 83.42837 * 14 13 12 41 41 H 0.96997 * 119.99390 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.98470 * 238.55071 * 24 15 14 43 43 H 1.09000 * 109.98964 * 117.23976 * 24 15 14 44 44 H 1.09002 * 109.98340 * 297.24051 * 25 9 7 45 45 H 1.08998 * 109.99293 * 58.50459 * 25 9 7 46 46 H 1.07998 * 119.81341 * 180.25718 * 26 6 4 47 47 H 1.09004 * 109.46858 * 96.11813 * 28 27 26 48 48 H 1.09007 * 109.47095 * 216.11044 * 28 27 26 49 49 H 1.08996 * 109.47537 * 336.11144 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1783 0.0000 4 6 3.5796 1.1841 0.0048 5 8 4.2053 2.2325 0.0088 6 6 4.2724 -0.1135 -0.0008 7 6 5.7436 -0.1849 -0.0012 8 8 6.3921 0.6355 -0.6221 9 7 6.3711 -1.1594 0.6865 10 6 5.7191 -2.1486 1.5663 11 6 6.8286 -2.6030 2.5516 12 6 8.0702 -2.5768 1.6456 13 6 8.2488 -3.9087 0.9005 14 6 9.0728 -4.7281 1.9291 15 7 9.9637 -3.7451 2.5750 16 6 11.1538 -4.0289 3.1900 17 1 11.7349 -3.2345 3.6346 18 6 11.6133 -5.3378 3.2420 19 7 10.9054 -6.3058 2.6997 20 14 13.2364 -5.7251 4.0815 21 1 12.9940 -6.0157 5.5175 22 1 13.8580 -6.9087 3.4350 23 1 14.1476 -4.5589 3.9595 24 6 9.3595 -2.4065 2.4481 25 6 7.8229 -1.4145 0.6850 26 6 3.5075 -1.2620 0.0001 27 7 2.1663 -1.1848 0.0005 28 6 1.3879 -2.4259 0.0010 29 1 -0.3634 -0.1079 1.0220 30 1 -0.3633 0.9391 -0.4174 31 1 -0.3634 -0.8310 -0.6044 32 1 1.6137 2.1082 -0.0004 33 1 4.8953 -1.6867 2.1104 34 1 5.3589 -2.9955 0.9824 35 1 6.9319 -1.8981 3.3765 36 1 6.6346 -3.6096 2.9220 37 1 7.2856 -4.3805 0.7060 38 1 8.8074 -3.7676 -0.0247 39 1 9.6588 -5.4939 1.4211 40 1 8.4135 -5.1843 2.6676 41 1 11.2267 -7.2203 2.7357 42 1 10.0408 -1.7387 1.9210 43 1 9.1332 -2.0047 3.4358 44 1 8.1529 -1.6838 -0.3183 45 1 8.3573 -0.5282 1.0272 46 1 3.9898 -2.2283 0.0003 47 1 1.1025 -2.6754 1.0229 48 1 0.4913 -2.2927 -0.6044 49 1 1.9907 -3.2330 -0.4153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041383948.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:42:38 Heat of formation + Delta-G solvation = 10.408700 kcal Electronic energy + Delta-G solvation = -30757.318123 eV Core-core repulsion = 26686.234177 eV Total energy + Delta-G solvation = -4071.083946 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.55908 -40.08910 -38.50968 -37.67123 -35.61464 -33.89278 -33.08428 -32.42582 -30.38921 -29.35514 -28.85286 -28.17729 -27.29886 -25.60896 -24.63675 -23.47042 -22.79367 -21.88700 -20.26571 -19.88598 -18.87666 -18.08057 -17.44228 -16.87834 -16.65218 -16.50389 -16.06374 -15.66692 -15.11503 -14.79137 -14.48873 -14.39884 -13.99161 -13.97167 -13.81024 -13.60559 -13.48912 -13.44604 -13.02113 -12.87409 -12.70638 -12.55565 -12.48042 -12.32617 -12.23206 -11.85658 -11.50793 -11.31568 -11.10972 -10.93823 -10.77217 -10.24568 -10.06608 -9.97200 -9.95430 -9.80359 -9.72809 -9.52471 -9.33152 -8.65633 -8.50955 -8.18933 -6.83554 -5.66184 -3.06909 0.65517 1.01702 1.97756 2.85847 3.06343 3.40145 3.45610 3.47395 3.63703 3.71302 4.02467 4.16363 4.30938 4.41792 4.48432 4.55754 4.68893 4.70623 4.77291 4.83766 4.88519 4.98507 5.07789 5.20349 5.25118 5.34903 5.39614 5.44082 5.48301 5.52225 5.80050 5.86182 5.98850 6.02214 6.05259 6.16377 6.23322 6.24319 6.32422 6.39955 6.45524 6.54797 6.61767 6.77118 6.85611 7.47878 7.62613 7.64295 7.84094 7.99205 8.34757 8.37310 9.21824 9.82261 10.47310 11.38078 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023516 B = 0.002343 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.373240 B =11945.888889 C =12726.586690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.156 3.844 3 C -0.271 4.271 4 C 0.410 3.590 5 O -0.490 6.490 6 C -0.291 4.291 7 C 0.591 3.409 8 O -0.518 6.518 9 N -0.618 5.618 10 C 0.098 3.902 11 C -0.113 4.113 12 C -0.081 4.081 13 C -0.131 4.131 14 C 0.155 3.845 15 N -0.604 5.604 16 C -0.219 4.219 17 H 0.077 0.923 18 C -0.013 4.013 19 N -0.924 5.924 20 Si 0.914 3.086 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.151 3.849 25 C 0.127 3.873 26 C 0.167 3.833 27 N -0.472 5.472 28 C 0.048 3.952 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.152 0.848 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.012 0.988 41 H 0.251 0.749 42 H 0.028 0.972 43 H 0.026 0.974 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.172 0.828 47 H 0.084 0.916 48 H 0.093 0.907 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.494 4.097 -5.329 28.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.050 3.950 3 C -0.295 4.295 4 C 0.297 3.703 5 O -0.372 6.372 6 C -0.302 4.302 7 C 0.380 3.620 8 O -0.393 6.393 9 N -0.354 5.354 10 C -0.025 4.025 11 C -0.150 4.150 12 C -0.082 4.082 13 C -0.169 4.169 14 C 0.030 3.970 15 N -0.330 5.330 16 C -0.348 4.348 17 H 0.095 0.905 18 C -0.208 4.208 19 N -0.573 5.573 20 Si 0.745 3.255 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.024 3.976 25 C 0.005 3.995 26 C 0.037 3.963 27 N -0.159 5.159 28 C -0.093 4.093 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.170 0.830 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.122 0.878 40 H 0.030 0.970 41 H 0.062 0.938 42 H 0.046 0.954 43 H 0.044 0.956 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.189 0.811 47 H 0.102 0.898 48 H 0.112 0.888 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -26.821 4.842 -5.671 27.838 hybrid contribution 0.723 -0.464 0.554 1.023 sum -26.097 4.378 -5.117 26.952 Atomic orbital electron populations 1.21188 0.88033 1.05053 1.04139 1.20275 0.94873 0.85013 0.94813 1.22230 0.96157 0.97233 1.13882 1.18152 0.88332 0.87703 0.76139 1.90813 1.70047 1.33363 1.42945 1.22437 0.94216 0.95184 1.18322 1.17109 0.85842 0.79969 0.79126 1.90822 1.66664 1.38528 1.43321 1.48589 1.08681 1.31343 1.46769 1.22543 0.96829 0.91112 0.92051 1.22636 0.93079 1.02567 0.96760 1.21546 0.96012 0.95265 0.95383 1.22907 0.99899 0.94740 0.99370 1.21960 0.91007 0.92212 0.91783 1.44603 1.21316 1.00953 1.66108 1.19095 0.94881 0.92840 1.27942 0.90476 1.24770 0.99056 0.95578 1.01363 1.69798 1.38150 0.99591 1.49763 0.86072 0.83010 0.77607 0.78830 1.21692 1.21692 1.20683 1.21064 0.90757 0.89724 0.96008 1.21840 0.79799 0.98018 0.99851 1.22433 0.81941 1.00325 0.91567 1.42582 1.05290 1.07206 1.60836 1.22558 0.97795 0.84351 1.04606 0.89268 0.88879 0.90103 0.83026 0.91095 0.91772 0.90545 0.89285 0.92374 0.91860 0.87769 0.97043 0.93810 0.95398 0.95597 0.91178 0.91204 0.81076 0.89761 0.88831 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.23 9.34 36.00 0.34 0.10 16 2 C 0.16 0.96 6.64 -82.13 -0.55 0.41 16 3 C -0.27 -2.71 9.57 -39.47 -0.38 -3.09 16 4 C 0.41 6.28 6.94 -34.68 -0.24 6.04 16 5 O -0.49 -9.98 16.97 -8.11 -0.14 -10.12 16 6 C -0.29 -3.96 5.59 -102.72 -0.57 -4.54 16 7 C 0.59 10.11 7.43 -12.58 -0.09 10.02 16 8 O -0.52 -11.35 16.65 -7.69 -0.13 -11.48 16 9 N -0.62 -9.16 3.34 -172.17 -0.58 -9.74 16 10 C 0.10 1.08 5.11 -2.30 -0.01 1.07 16 11 C -0.11 -1.54 5.89 -25.20 -0.15 -1.69 16 12 C -0.08 -1.34 0.62 -153.99 -0.10 -1.44 16 13 C -0.13 -2.30 5.89 -25.24 -0.15 -2.45 16 14 C 0.16 3.57 5.77 -2.31 -0.01 3.56 16 15 N -0.60 -15.12 3.41 -170.41 -0.58 -15.70 16 16 C -0.22 -6.06 10.28 -15.06 -0.15 -6.21 16 17 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 18 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 19 N -0.92 -26.46 10.10 55.49 0.56 -25.90 16 20 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.15 3.11 6.42 -3.64 -0.02 3.08 16 25 C 0.13 2.07 6.05 -3.64 -0.02 2.05 16 26 C 0.17 1.37 8.45 -16.54 -0.14 1.23 16 27 N -0.47 -2.54 2.97 -119.75 -0.36 -2.90 16 28 C 0.05 0.04 9.98 59.85 0.60 0.64 16 29 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16 30 H 0.09 0.14 7.97 -51.93 -0.41 -0.28 16 31 H 0.08 0.00 6.01 -51.93 -0.31 -0.31 16 32 H 0.15 1.29 8.01 -52.49 -0.42 0.87 16 33 H 0.07 0.68 7.28 -51.93 -0.38 0.30 16 34 H 0.06 0.55 6.88 -51.93 -0.36 0.19 16 35 H 0.08 1.06 7.79 -51.93 -0.40 0.66 16 36 H 0.09 1.20 7.89 -51.93 -0.41 0.79 16 37 H 0.06 0.86 7.89 -51.93 -0.41 0.45 16 38 H 0.06 1.15 7.79 -51.93 -0.40 0.74 16 39 H 0.10 2.75 5.89 -51.93 -0.31 2.45 16 40 H 0.01 0.28 8.10 -51.93 -0.42 -0.14 16 41 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.03 0.59 7.78 -51.93 -0.40 0.19 16 43 H 0.03 0.54 7.61 -51.93 -0.40 0.14 16 44 H 0.07 1.16 7.61 -51.93 -0.40 0.77 16 45 H 0.07 1.22 7.78 -51.93 -0.40 0.82 16 46 H 0.17 1.00 5.60 -52.49 -0.29 0.71 16 47 H 0.08 -0.02 8.14 -51.93 -0.42 -0.45 16 48 H 0.09 -0.08 5.94 -51.92 -0.31 -0.39 16 49 H 0.09 -0.02 7.86 -51.93 -0.41 -0.42 16 LS Contribution 383.85 15.07 5.78 5.78 Total: -1.00 -39.66 383.85 -9.44 -49.11 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -7.24 Total: -4.38 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -1.75 Total: 8.34 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.95 Total: -54.23 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.27 Total: -21.60 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.66 -9.44 -49.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041383948.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.517 kcal (2) G-P(sol) polarization free energy of solvation -39.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds