Wall clock time and date at job start Wed Apr 1 2020 06:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34851 * 119.10240 * 2 1 4 4 C 1.41680 * 119.33921 * 179.77696 * 3 2 1 5 5 O 1.22089 * 121.06690 * 180.21345 * 4 3 2 6 6 C 1.47096 * 117.85974 * 0.46006 * 4 3 2 7 7 C 1.47289 * 120.87878 * 179.77626 * 6 4 3 8 8 O 1.21619 * 120.00150 * 323.64343 * 7 6 4 9 9 N 1.34774 * 119.99983 * 143.64148 * 7 6 4 10 10 C 1.47563 * 125.67528 * 354.74961 * 9 7 6 11 11 C 1.55185 * 105.00731 * 203.85967 * 10 9 7 12 12 C 1.53722 * 101.43770 * 324.52664 * 11 10 9 13 13 C 1.53654 * 111.40304 * 272.72313 * 12 11 10 14 14 C 1.55184 * 101.42020 * 272.69973 * 13 12 11 15 15 N 1.47557 * 105.00597 * 324.50564 * 14 13 12 16 16 C 1.36940 * 125.67770 * 203.86032 * 15 14 13 17 17 H 1.08004 * 119.99961 * 179.97438 * 16 15 14 18 18 C 1.38812 * 119.99827 * 359.97438 * 16 15 14 19 19 N 1.31624 * 119.99817 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00051 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47057 * 89.99944 * 20 18 16 22 22 H 1.48497 * 109.47390 * 210.00023 * 20 18 16 23 23 H 1.48504 * 109.47396 * 330.00292 * 20 18 16 24 24 C 1.47410 * 108.65305 * 23.85876 * 15 14 13 25 25 C 1.47406 * 125.67450 * 174.75648 * 9 7 6 26 26 C 1.37991 * 118.23892 * 359.50305 * 6 4 3 27 27 N 1.34344 * 120.36952 * 0.26959 * 26 6 4 28 28 C 1.46500 * 118.80162 * 179.97438 * 27 26 6 29 29 H 1.09002 * 109.47528 * 263.97143 * 1 2 3 30 30 H 1.09000 * 109.47081 * 23.96667 * 1 2 3 31 31 H 1.08998 * 109.47464 * 143.97047 * 1 2 3 32 32 H 1.07998 * 120.33219 * 359.97438 * 3 2 1 33 33 H 1.08997 * 110.33468 * 322.74222 * 10 9 7 34 34 H 1.09000 * 110.33399 * 84.87573 * 10 9 7 35 35 H 1.08997 * 111.03466 * 82.53803 * 11 10 9 36 36 H 1.08998 * 111.03257 * 206.42753 * 11 10 9 37 37 H 1.09005 * 111.03947 * 30.73426 * 13 12 11 38 38 H 1.08995 * 111.03863 * 154.66470 * 13 12 11 39 39 H 1.08993 * 110.33788 * 205.62237 * 14 13 12 40 40 H 1.09001 * 110.42031 * 83.42837 * 14 13 12 41 41 H 0.96997 * 119.99390 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.98470 * 238.55071 * 24 15 14 43 43 H 1.09000 * 109.98964 * 117.23976 * 24 15 14 44 44 H 1.09002 * 109.98340 * 297.24051 * 25 9 7 45 45 H 1.08998 * 109.99293 * 58.50459 * 25 9 7 46 46 H 1.07998 * 119.81341 * 180.25718 * 26 6 4 47 47 H 1.09004 * 109.46858 * 96.11813 * 28 27 26 48 48 H 1.09007 * 109.47095 * 216.11044 * 28 27 26 49 49 H 1.08996 * 109.47537 * 336.11144 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1783 0.0000 4 6 3.5796 1.1841 0.0048 5 8 4.2053 2.2325 0.0088 6 6 4.2724 -0.1135 -0.0008 7 6 5.7436 -0.1849 -0.0012 8 8 6.3921 0.6355 -0.6221 9 7 6.3711 -1.1594 0.6865 10 6 5.7191 -2.1486 1.5663 11 6 6.8286 -2.6030 2.5516 12 6 8.0702 -2.5768 1.6456 13 6 8.2488 -3.9087 0.9005 14 6 9.0728 -4.7281 1.9291 15 7 9.9637 -3.7451 2.5750 16 6 11.1538 -4.0289 3.1900 17 1 11.7349 -3.2345 3.6346 18 6 11.6133 -5.3378 3.2420 19 7 10.9054 -6.3058 2.6997 20 14 13.2364 -5.7251 4.0815 21 1 12.9940 -6.0157 5.5175 22 1 13.8580 -6.9087 3.4350 23 1 14.1476 -4.5589 3.9595 24 6 9.3595 -2.4065 2.4481 25 6 7.8229 -1.4145 0.6850 26 6 3.5075 -1.2620 0.0001 27 7 2.1663 -1.1848 0.0005 28 6 1.3879 -2.4259 0.0010 29 1 -0.3634 -0.1079 1.0220 30 1 -0.3633 0.9391 -0.4174 31 1 -0.3634 -0.8310 -0.6044 32 1 1.6137 2.1082 -0.0004 33 1 4.8953 -1.6867 2.1104 34 1 5.3589 -2.9955 0.9824 35 1 6.9319 -1.8981 3.3765 36 1 6.6346 -3.6096 2.9220 37 1 7.2856 -4.3805 0.7060 38 1 8.8074 -3.7676 -0.0247 39 1 9.6588 -5.4939 1.4211 40 1 8.4135 -5.1843 2.6676 41 1 11.2267 -7.2203 2.7357 42 1 10.0408 -1.7387 1.9210 43 1 9.1332 -2.0047 3.4358 44 1 8.1529 -1.6838 -0.3183 45 1 8.3573 -0.5282 1.0272 46 1 3.9898 -2.2283 0.0003 47 1 1.1025 -2.6754 1.0229 48 1 0.4913 -2.2927 -0.6044 49 1 1.9907 -3.2330 -0.4153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041383948.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:42:36 Heat of formation + Delta-G solvation = -17.418060 kcal Electronic energy + Delta-G solvation = -30758.524782 eV Core-core repulsion = 26686.234177 eV Total energy + Delta-G solvation = -4072.290605 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.31210 -41.30024 -39.73710 -38.84757 -37.16036 -34.80279 -34.19169 -33.59046 -31.94987 -30.54598 -30.31929 -29.07011 -27.68548 -27.22816 -25.69246 -24.86728 -23.89177 -22.69794 -22.08221 -20.85887 -20.24925 -19.02099 -18.77478 -18.16637 -17.46071 -17.43324 -16.88946 -16.74475 -16.62212 -16.18855 -15.80812 -15.61777 -15.29412 -15.03234 -14.79293 -14.49900 -14.33675 -14.11262 -13.99823 -13.89731 -13.80462 -13.70011 -13.64384 -13.32212 -13.03189 -12.95342 -12.69194 -12.65262 -12.61053 -12.49619 -12.38287 -12.00539 -11.80040 -11.58541 -11.41538 -11.25732 -11.16189 -10.71742 -10.45678 -10.42379 -9.73066 -9.05428 -8.85781 -7.76519 -5.19373 -0.15180 0.31659 1.45468 1.47188 1.48223 1.56993 1.68550 1.95472 2.50218 2.68782 3.24496 3.28691 3.38982 3.53209 3.58592 3.63141 3.67362 3.79546 3.85609 4.13054 4.20534 4.25171 4.28556 4.38854 4.46398 4.50119 4.55155 4.67857 4.71871 4.74457 4.75745 4.75994 4.85410 4.86244 4.89968 4.91359 5.04031 5.06656 5.18294 5.21746 5.28564 5.32012 5.38409 5.48681 5.71111 5.72422 5.81645 5.86478 6.34474 6.48751 7.04806 7.13953 7.16732 7.79614 8.43406 9.25006 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023516 B = 0.002343 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.373240 B =11945.888889 C =12726.586690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.191 3.809 3 C -0.306 4.306 4 C 0.385 3.615 5 O -0.580 6.580 6 C -0.345 4.345 7 C 0.587 3.413 8 O -0.587 6.587 9 N -0.615 5.615 10 C 0.100 3.900 11 C -0.109 4.109 12 C -0.068 4.068 13 C -0.111 4.111 14 C 0.158 3.842 15 N -0.625 5.625 16 C -0.239 4.239 17 H 0.073 0.927 18 C -0.063 4.063 19 N -0.944 5.944 20 Si 0.976 3.024 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.276 1.276 24 C 0.146 3.854 25 C 0.132 3.868 26 C 0.216 3.784 27 N -0.454 5.454 28 C 0.031 3.969 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.113 0.887 32 H 0.155 0.845 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.001 0.999 41 H 0.248 0.752 42 H 0.015 0.985 43 H 0.026 0.974 44 H 0.065 0.935 45 H 0.046 0.954 46 H 0.209 0.791 47 H 0.109 0.891 48 H 0.120 0.880 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.276 0.880 -5.123 32.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.083 3.917 3 C -0.329 4.329 4 C 0.279 3.721 5 O -0.470 6.470 6 C -0.355 4.355 7 C 0.378 3.622 8 O -0.468 6.468 9 N -0.348 5.348 10 C -0.021 4.021 11 C -0.147 4.147 12 C -0.069 4.069 13 C -0.149 4.149 14 C 0.034 3.966 15 N -0.351 5.351 16 C -0.368 4.368 17 H 0.091 0.909 18 C -0.256 4.256 19 N -0.594 5.594 20 Si 0.805 3.195 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.201 1.201 24 C 0.020 3.980 25 C 0.009 3.991 26 C 0.082 3.918 27 N -0.137 5.137 28 C -0.107 4.107 29 H 0.130 0.870 30 H 0.116 0.884 31 H 0.132 0.868 32 H 0.172 0.828 33 H 0.114 0.886 34 H 0.127 0.873 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.019 0.981 41 H 0.058 0.942 42 H 0.033 0.967 43 H 0.043 0.957 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.226 0.774 47 H 0.128 0.872 48 H 0.138 0.862 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -31.697 1.558 -5.441 32.198 hybrid contribution 2.051 0.369 0.521 2.148 sum -29.645 1.927 -4.920 30.113 Atomic orbital electron populations 1.21413 0.83830 1.06822 1.06188 1.20850 0.97079 0.83874 0.89917 1.22089 0.93746 0.99571 1.17474 1.18952 0.90512 0.87510 0.75132 1.90755 1.71854 1.35798 1.48634 1.22007 0.92520 0.96538 1.24482 1.17712 0.87349 0.79053 0.78090 1.90767 1.68419 1.41168 1.46429 1.48593 1.07910 1.31643 1.46685 1.22842 0.96158 0.91590 0.91518 1.22626 0.92147 1.03269 0.96637 1.21346 0.95444 0.94723 0.95409 1.22751 1.00856 0.94048 0.97294 1.21776 0.90622 0.91970 0.92261 1.44891 1.21203 1.02946 1.66083 1.19395 0.96188 0.93066 1.28185 0.90893 1.25536 1.02187 0.95504 1.02341 1.70030 1.39323 0.99507 1.50565 0.85108 0.79397 0.77218 0.77776 1.21224 1.21743 1.20098 1.21194 0.92486 0.87748 0.96557 1.21603 0.81288 0.96875 0.99346 1.22739 0.82873 0.99581 0.86622 1.43230 1.04835 1.09082 1.56586 1.23156 0.98462 0.82009 1.07111 0.86959 0.88450 0.86824 0.82759 0.88623 0.87260 0.91170 0.88091 0.88033 0.92594 0.91360 0.98107 0.94249 0.96732 0.95652 0.91647 0.93589 0.77435 0.87238 0.86163 0.86622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.29 9.34 71.24 0.67 0.96 16 2 C 0.19 1.54 6.64 41.20 0.27 1.82 16 3 C -0.31 -6.03 9.57 22.34 0.21 -5.82 16 4 C 0.38 12.61 6.94 25.45 0.18 12.79 16 5 O -0.58 -26.67 16.97 6.77 0.11 -26.55 16 6 C -0.34 -9.32 5.59 -18.63 -0.10 -9.42 16 7 C 0.59 20.79 7.43 86.62 0.64 21.43 16 8 O -0.59 -28.08 16.65 8.29 0.14 -27.94 16 9 N -0.61 -17.69 3.34 -816.88 -2.73 -20.42 16 10 C 0.10 1.80 5.11 86.93 0.44 2.24 16 11 C -0.11 -2.68 5.89 31.59 0.19 -2.50 16 12 C -0.07 -2.21 0.62 -51.84 -0.03 -2.24 16 13 C -0.11 -3.72 5.89 31.56 0.19 -3.54 16 14 C 0.16 7.30 5.77 86.93 0.50 7.80 16 15 N -0.62 -31.97 3.41 -693.04 -2.36 -34.34 16 16 C -0.24 -13.55 10.28 84.03 0.86 -12.68 16 17 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 18 C -0.06 -3.55 5.49 84.86 0.47 -3.09 16 19 N -0.94 -54.95 10.10 21.65 0.22 -54.74 16 20 Si 0.98 45.79 29.55 68.60 2.03 47.82 16 21 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 C 0.15 6.17 6.42 86.14 0.55 6.72 16 25 C 0.13 4.38 6.05 86.14 0.52 4.90 16 26 C 0.22 2.57 8.45 84.25 0.71 3.28 16 27 N -0.45 -2.24 2.97 -532.77 -1.58 -3.82 16 28 C 0.03 -0.20 9.98 127.77 1.27 1.07 16 29 H 0.11 -0.57 8.14 -2.39 -0.02 -0.59 16 30 H 0.10 -0.16 7.97 -2.39 -0.02 -0.18 16 31 H 0.11 -0.90 6.01 -2.39 -0.01 -0.92 16 32 H 0.15 2.76 8.01 -2.91 -0.02 2.74 16 33 H 0.10 1.34 7.28 -2.39 -0.02 1.32 16 34 H 0.11 1.07 6.88 -2.39 -0.02 1.05 16 35 H 0.07 1.84 7.79 -2.39 -0.02 1.82 16 36 H 0.10 2.33 7.89 -2.39 -0.02 2.31 16 37 H 0.10 2.54 7.89 -2.38 -0.02 2.52 16 38 H 0.06 1.97 7.79 -2.39 -0.02 1.95 16 39 H 0.07 3.68 5.89 -2.39 -0.01 3.66 16 40 H 0.00 0.05 8.10 -2.39 -0.02 0.03 16 41 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 42 H 0.01 0.65 7.78 -2.39 -0.02 0.63 16 43 H 0.03 1.07 7.61 -2.39 -0.02 1.06 16 44 H 0.07 2.22 7.61 -2.39 -0.02 2.21 16 45 H 0.05 1.73 7.78 -2.39 -0.02 1.71 16 46 H 0.21 0.95 5.60 -2.91 -0.02 0.93 16 47 H 0.11 -1.04 8.14 -2.38 -0.02 -1.05 16 48 H 0.12 -1.28 5.94 -2.38 -0.01 -1.29 16 49 H 0.12 -1.06 7.86 -2.39 -0.02 -1.08 16 Total: -1.00 -101.65 383.85 4.33 -97.32 By element: Atomic # 1 Polarization: -2.04 SS G_CDS: 0.97 Total: -1.07 kcal Atomic # 6 Polarization: 16.19 SS G_CDS: 7.54 Total: 23.74 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -6.46 Total: -113.31 kcal Atomic # 8 Polarization: -54.74 SS G_CDS: 0.25 Total: -54.49 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -101.65 4.33 -97.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041383948.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.902 kcal (2) G-P(sol) polarization free energy of solvation -101.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds