Wall clock time and date at job start Wed Apr 1 2020 05:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35922 * 117.00091 * 2 1 4 4 C 1.38841 * 120.40580 * 359.97272 * 3 2 1 5 5 N 1.31884 * 121.00340 * 180.02562 * 4 3 2 6 6 C 1.31686 * 121.93574 * 359.76835 * 5 4 3 7 7 C 1.39527 * 120.69148 * 0.49774 * 6 5 4 8 8 C 1.47848 * 120.53167 * 179.77163 * 7 6 5 9 9 O 1.21550 * 120.00359 * 222.90061 * 8 7 6 10 10 N 1.34779 * 119.99982 * 42.89310 * 8 7 6 11 11 C 1.47559 * 125.67543 * 4.95139 * 10 8 7 12 12 C 1.55438 * 104.88184 * 156.03159 * 11 10 8 13 13 C 1.53655 * 101.31005 * 35.82726 * 12 11 10 14 14 C 1.53664 * 111.41038 * 87.06334 * 13 12 11 15 15 C 1.55186 * 101.41501 * 155.02446 * 14 13 12 16 16 N 1.47561 * 105.00712 * 324.50757 * 15 14 13 17 17 C 1.36941 * 125.67631 * 203.82707 * 16 15 14 18 18 H 1.07996 * 120.00360 * 180.02562 * 17 16 15 19 19 C 1.38811 * 119.99848 * 0.03985 * 17 16 15 20 20 N 1.31625 * 119.99630 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00293 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47185 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47068 * 120.00095 * 21 19 17 24 24 H 1.48503 * 109.47485 * 240.00437 * 21 19 17 25 25 C 1.47408 * 108.65481 * 23.86340 * 16 15 14 26 26 C 1.47412 * 125.67576 * 185.25963 * 10 8 7 27 27 C 1.38843 * 120.40375 * 180.02562 * 3 2 1 28 28 C 1.50701 * 120.87980 * 359.97438 * 27 3 2 29 29 H 1.08999 * 109.46965 * 300.00164 * 1 2 3 30 30 H 1.08996 * 109.46563 * 60.00257 * 1 2 3 31 31 H 1.08996 * 109.47055 * 180.02562 * 1 2 3 32 32 H 1.08007 * 119.50458 * 0.02926 * 4 3 2 33 33 H 1.08002 * 119.65206 * 180.27178 * 6 5 4 34 34 H 1.08998 * 110.33672 * 275.02660 * 11 10 8 35 35 H 1.09003 * 110.33275 * 37.25732 * 11 10 8 36 36 H 1.08997 * 111.25401 * 277.75646 * 12 11 10 37 37 H 1.09003 * 110.95023 * 153.76774 * 12 11 10 38 38 H 1.08993 * 111.03475 * 273.05805 * 14 13 12 39 39 H 1.08995 * 111.03390 * 36.99555 * 14 13 12 40 40 H 1.08997 * 110.33348 * 205.62194 * 15 14 13 41 41 H 1.08997 * 110.42136 * 83.43341 * 15 14 13 42 42 H 0.97002 * 119.99239 * 179.97438 * 20 19 17 43 43 H 1.08995 * 109.98634 * 238.53655 * 25 16 15 44 44 H 1.08997 * 109.98694 * 117.22695 * 25 16 15 45 45 H 1.09006 * 109.98006 * 301.45690 * 26 10 8 46 46 H 1.08994 * 109.98385 * 62.72080 * 26 10 8 47 47 H 1.08998 * 109.47318 * 264.06683 * 28 27 3 48 48 H 1.08996 * 109.47153 * 24.06568 * 28 27 3 49 49 H 1.09002 * 109.47101 * 144.07096 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2982 2.3808 -0.0006 5 7 1.8847 3.5621 -0.0011 6 6 3.1954 3.6891 0.0034 7 6 4.0200 2.5635 -0.0014 8 6 5.4912 2.7102 -0.0014 9 8 6.1722 2.0061 -0.7210 10 7 6.0772 3.6247 0.7965 11 6 5.3860 4.4693 1.7897 12 6 6.4839 4.8522 2.8212 13 6 7.7135 5.0004 1.9117 14 6 7.8156 6.4204 1.3334 15 6 9.3376 6.5280 1.0503 16 7 9.9838 5.7781 2.1446 17 6 11.2665 5.9595 2.5884 18 1 11.6477 5.3568 3.3994 19 6 12.0767 6.9185 1.9961 20 7 11.6119 7.6537 1.0082 21 14 13.8262 7.1665 2.6018 22 1 14.1036 6.2223 3.7140 23 1 14.7761 6.9124 1.4890 24 1 13.9902 8.5615 3.0838 25 6 9.0191 4.8006 2.6801 26 6 7.5143 3.9522 0.8178 27 6 3.4321 1.2935 -0.0005 28 6 4.2810 0.0483 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.2197 2.3226 -0.0005 33 1 3.6368 4.6748 0.0073 34 1 4.9829 5.3625 1.3124 35 1 4.5894 3.9067 2.2765 36 1 6.6323 4.0585 3.5534 37 1 6.2450 5.7953 3.3128 38 1 7.2391 6.5103 0.4128 39 1 7.5002 7.1643 2.0649 40 1 9.6533 7.5712 1.0679 41 1 9.5783 6.0764 0.0880 42 1 12.1780 8.3240 0.5946 43 1 8.8573 4.9807 3.7428 44 1 9.3908 3.7876 2.5259 45 1 8.0964 3.0595 1.0469 46 1 7.8184 4.3575 -0.1472 47 1 4.5738 -0.1919 1.0215 48 1 3.7102 -0.7805 -0.4192 49 1 5.1730 0.2167 -0.6039 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041409673.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:17 Heat of formation + Delta-G solvation = 3.234969 kcal Electronic energy + Delta-G solvation = -30658.962574 eV Core-core repulsion = 26587.567551 eV Total energy + Delta-G solvation = -4071.395023 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.36665 -40.19441 -38.77096 -38.01005 -35.78573 -34.01374 -32.85804 -31.27538 -30.43889 -29.14898 -28.46421 -28.12628 -27.95413 -25.85689 -24.52714 -23.36793 -22.72653 -22.36261 -20.34606 -19.91582 -18.91024 -18.11828 -17.80109 -16.90561 -16.67433 -16.57792 -16.26085 -15.72215 -15.47318 -14.89075 -14.63054 -14.40934 -14.26723 -13.92796 -13.76462 -13.31730 -13.19571 -13.06570 -12.95543 -12.88832 -12.48749 -12.40973 -12.11451 -12.01877 -11.93211 -11.90526 -11.74496 -11.36062 -11.23478 -10.93974 -10.81265 -10.40005 -10.26304 -10.04756 -9.94722 -9.78173 -9.70375 -9.59512 -9.48293 -8.83409 -8.67097 -8.61398 -6.84080 -5.65727 -3.07157 0.38535 0.87036 2.46764 2.67542 2.99741 3.39926 3.40399 3.45546 3.47949 4.00701 4.13875 4.27853 4.42055 4.48219 4.50552 4.62496 4.65959 4.71757 4.89119 4.93375 4.97083 5.04856 5.22398 5.27872 5.34045 5.42724 5.45070 5.48604 5.50851 5.75289 5.82578 5.87117 5.91522 5.92928 5.99023 6.09844 6.15978 6.20623 6.21839 6.32877 6.52900 6.57882 6.72625 6.73280 6.80375 7.43498 7.50070 7.50687 7.62342 7.84878 8.02732 8.35072 9.21502 9.82112 10.46847 11.38374 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.030014 B = 0.002202 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.663394 B =12714.546702 C =13045.735722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.068 3.932 4 C 0.036 3.964 5 N -0.454 5.454 6 C 0.100 3.900 7 C -0.141 4.141 8 C 0.578 3.422 9 O -0.527 6.527 10 N -0.607 5.607 11 C 0.097 3.903 12 C -0.116 4.116 13 C -0.081 4.081 14 C -0.131 4.131 15 C 0.152 3.848 16 N -0.604 5.604 17 C -0.221 4.221 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.151 3.849 26 C 0.129 3.871 27 C -0.020 4.020 28 C -0.128 4.128 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.106 0.894 41 H 0.012 0.988 42 H 0.251 0.749 43 H 0.030 0.970 44 H 0.024 0.976 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.484 -11.433 0.136 27.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.020 3.980 4 C -0.121 4.121 5 N -0.163 5.163 6 C -0.058 4.058 7 C -0.146 4.146 8 C 0.366 3.634 9 O -0.404 6.404 10 N -0.340 5.340 11 C -0.026 4.026 12 C -0.155 4.155 13 C -0.082 4.082 14 C -0.170 4.170 15 C 0.027 3.973 16 N -0.331 5.331 17 C -0.349 4.349 18 H 0.096 0.904 19 C -0.208 4.208 20 N -0.571 5.571 21 Si 0.745 3.255 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.025 3.975 26 C 0.007 3.993 27 C -0.029 4.029 28 C -0.184 4.184 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.179 0.821 33 H 0.182 0.818 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.124 0.876 41 H 0.030 0.970 42 H 0.062 0.938 43 H 0.048 0.952 44 H 0.042 0.958 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.094 0.906 48 H 0.095 0.905 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -24.388 -11.217 -0.340 26.846 hybrid contribution 1.016 -0.443 0.240 1.134 sum -23.372 -11.660 -0.100 26.120 Atomic orbital electron populations 1.23154 0.77874 1.04549 1.01622 1.86097 1.21601 1.25532 1.88604 1.19715 0.92236 0.86066 0.99934 1.23063 1.00686 0.87103 1.01287 1.67572 1.11790 1.25887 1.11051 1.22954 0.88430 0.98352 0.96081 1.20685 0.94757 0.93885 1.05316 1.17537 0.86239 0.79627 0.80032 1.90762 1.64402 1.43895 1.41367 1.48617 1.09946 1.37764 1.37708 1.22614 0.95929 0.94327 0.89682 1.22703 0.93608 1.02556 0.96604 1.21548 0.95651 0.96267 0.94754 1.22926 1.01138 0.93467 0.99470 1.21997 0.85215 1.00682 0.89371 1.44637 1.10268 1.39597 1.38555 1.19115 0.86714 1.15499 1.13594 0.90433 1.24790 0.98657 0.98925 0.98391 1.69813 1.35074 1.25701 1.26464 0.86001 0.84193 0.77519 0.77802 1.20545 1.21786 1.21776 1.21088 0.87454 0.93546 0.95404 1.21932 0.79283 0.98147 0.99889 1.19729 0.90866 0.95599 0.96698 1.20964 1.00464 0.93300 1.03645 0.92300 0.92314 0.87733 0.82130 0.81756 0.90812 0.90902 0.90567 0.89378 0.92234 0.91600 0.87640 0.96964 0.93793 0.95208 0.95787 0.90868 0.90613 0.90628 0.90549 0.88089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.82 101.05 0.99 1.09 16 2 O -0.31 -2.65 9.57 -19.50 -0.19 -2.84 16 3 C 0.07 0.69 6.68 -39.13 -0.26 0.43 16 4 C 0.04 0.34 10.21 -17.31 -0.18 0.16 16 5 N -0.45 -5.02 10.34 -12.79 -0.13 -5.15 16 6 C 0.10 1.12 9.50 -17.13 -0.16 0.96 16 7 C -0.14 -1.76 5.25 -104.84 -0.55 -2.31 16 8 C 0.58 8.50 7.09 -12.33 -0.09 8.42 16 9 O -0.53 -9.38 14.97 5.32 0.08 -9.30 16 10 N -0.61 -8.38 3.34 -171.80 -0.57 -8.95 16 11 C 0.10 1.06 5.31 -2.17 -0.01 1.05 16 12 C -0.12 -1.41 5.94 -25.10 -0.15 -1.56 16 13 C -0.08 -1.30 0.61 -154.02 -0.09 -1.39 16 14 C -0.13 -2.30 5.85 -25.23 -0.15 -2.45 16 15 C 0.15 3.57 5.85 -2.30 -0.01 3.56 16 16 N -0.60 -15.06 3.41 -170.41 -0.58 -15.64 16 17 C -0.22 -6.07 10.28 -15.06 -0.15 -6.23 16 18 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 19 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 20 N -0.92 -26.66 10.09 55.49 0.56 -26.10 16 21 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C 0.15 3.00 6.51 -3.64 -0.02 2.98 16 26 C 0.13 2.07 6.03 -3.64 -0.02 2.05 16 27 C -0.02 -0.24 5.96 -103.76 -0.62 -0.85 16 28 C -0.13 -1.44 9.42 36.01 0.34 -1.10 16 29 H 0.06 0.19 7.67 -51.93 -0.40 -0.21 16 30 H 0.06 0.20 7.67 -51.93 -0.40 -0.20 16 31 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.16 0.99 6.30 -52.48 -0.33 0.66 16 33 H 0.17 1.61 6.42 -52.49 -0.34 1.27 16 34 H 0.07 0.71 7.14 -51.93 -0.37 0.34 16 35 H 0.07 0.70 7.49 -51.93 -0.39 0.31 16 36 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 37 H 0.09 0.98 7.78 -51.93 -0.40 0.58 16 38 H 0.06 0.95 7.94 -51.93 -0.41 0.53 16 39 H 0.07 1.11 7.82 -51.93 -0.41 0.71 16 40 H 0.11 2.81 5.89 -51.93 -0.31 2.51 16 41 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.03 0.58 7.86 -51.93 -0.41 0.17 16 44 H 0.02 0.49 7.41 -51.93 -0.39 0.10 16 45 H 0.07 1.26 7.44 -51.93 -0.39 0.87 16 46 H 0.08 1.34 7.78 -51.93 -0.40 0.93 16 47 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.08 0.77 7.45 -51.93 -0.39 0.38 16 49 H 0.10 1.34 5.69 -51.93 -0.30 1.05 16 LS Contribution 382.81 15.07 5.77 5.77 Total: -1.00 -32.80 382.81 -8.58 -41.37 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -7.25 Total: -0.50 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -1.24 Total: 4.36 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: -0.73 Total: -55.84 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.11 Total: -12.14 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.80 -8.58 -41.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041409673.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.608 kcal (2) G-P(sol) polarization free energy of solvation -32.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds