Wall clock time and date at job start Wed Apr 1 2020 05:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35922 * 117.00091 * 2 1 4 4 C 1.38841 * 120.40580 * 359.97272 * 3 2 1 5 5 N 1.31884 * 121.00340 * 180.02562 * 4 3 2 6 6 C 1.31686 * 121.93574 * 359.76835 * 5 4 3 7 7 C 1.39527 * 120.69148 * 0.49774 * 6 5 4 8 8 C 1.47848 * 120.53167 * 179.77163 * 7 6 5 9 9 O 1.21550 * 120.00359 * 222.90061 * 8 7 6 10 10 N 1.34779 * 119.99982 * 42.89310 * 8 7 6 11 11 C 1.47559 * 125.67543 * 4.95139 * 10 8 7 12 12 C 1.55438 * 104.88184 * 156.03159 * 11 10 8 13 13 C 1.53655 * 101.31005 * 35.82726 * 12 11 10 14 14 C 1.53664 * 111.41038 * 87.06334 * 13 12 11 15 15 C 1.55186 * 101.41501 * 155.02446 * 14 13 12 16 16 N 1.47561 * 105.00712 * 324.50757 * 15 14 13 17 17 C 1.36941 * 125.67631 * 203.82707 * 16 15 14 18 18 H 1.07996 * 120.00360 * 180.02562 * 17 16 15 19 19 C 1.38811 * 119.99848 * 0.03985 * 17 16 15 20 20 N 1.31625 * 119.99630 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00293 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47185 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47068 * 120.00095 * 21 19 17 24 24 H 1.48503 * 109.47485 * 240.00437 * 21 19 17 25 25 C 1.47408 * 108.65481 * 23.86340 * 16 15 14 26 26 C 1.47412 * 125.67576 * 185.25963 * 10 8 7 27 27 C 1.38843 * 120.40375 * 180.02562 * 3 2 1 28 28 C 1.50701 * 120.87980 * 359.97438 * 27 3 2 29 29 H 1.08999 * 109.46965 * 300.00164 * 1 2 3 30 30 H 1.08996 * 109.46563 * 60.00257 * 1 2 3 31 31 H 1.08996 * 109.47055 * 180.02562 * 1 2 3 32 32 H 1.08007 * 119.50458 * 0.02926 * 4 3 2 33 33 H 1.08002 * 119.65206 * 180.27178 * 6 5 4 34 34 H 1.08998 * 110.33672 * 275.02660 * 11 10 8 35 35 H 1.09003 * 110.33275 * 37.25732 * 11 10 8 36 36 H 1.08997 * 111.25401 * 277.75646 * 12 11 10 37 37 H 1.09003 * 110.95023 * 153.76774 * 12 11 10 38 38 H 1.08993 * 111.03475 * 273.05805 * 14 13 12 39 39 H 1.08995 * 111.03390 * 36.99555 * 14 13 12 40 40 H 1.08997 * 110.33348 * 205.62194 * 15 14 13 41 41 H 1.08997 * 110.42136 * 83.43341 * 15 14 13 42 42 H 0.97002 * 119.99239 * 179.97438 * 20 19 17 43 43 H 1.08995 * 109.98634 * 238.53655 * 25 16 15 44 44 H 1.08997 * 109.98694 * 117.22695 * 25 16 15 45 45 H 1.09006 * 109.98006 * 301.45690 * 26 10 8 46 46 H 1.08994 * 109.98385 * 62.72080 * 26 10 8 47 47 H 1.08998 * 109.47318 * 264.06683 * 28 27 3 48 48 H 1.08996 * 109.47153 * 24.06568 * 28 27 3 49 49 H 1.09002 * 109.47101 * 144.07096 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2982 2.3808 -0.0006 5 7 1.8847 3.5621 -0.0011 6 6 3.1954 3.6891 0.0034 7 6 4.0200 2.5635 -0.0014 8 6 5.4912 2.7102 -0.0014 9 8 6.1722 2.0061 -0.7210 10 7 6.0772 3.6247 0.7965 11 6 5.3860 4.4693 1.7897 12 6 6.4839 4.8522 2.8212 13 6 7.7135 5.0004 1.9117 14 6 7.8156 6.4204 1.3334 15 6 9.3376 6.5280 1.0503 16 7 9.9838 5.7781 2.1446 17 6 11.2665 5.9595 2.5884 18 1 11.6477 5.3568 3.3994 19 6 12.0767 6.9185 1.9961 20 7 11.6119 7.6537 1.0082 21 14 13.8262 7.1665 2.6018 22 1 14.1036 6.2223 3.7140 23 1 14.7761 6.9124 1.4890 24 1 13.9902 8.5615 3.0838 25 6 9.0191 4.8006 2.6801 26 6 7.5143 3.9522 0.8178 27 6 3.4321 1.2935 -0.0005 28 6 4.2810 0.0483 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.2197 2.3226 -0.0005 33 1 3.6368 4.6748 0.0073 34 1 4.9829 5.3625 1.3124 35 1 4.5894 3.9067 2.2765 36 1 6.6323 4.0585 3.5534 37 1 6.2450 5.7953 3.3128 38 1 7.2391 6.5103 0.4128 39 1 7.5002 7.1643 2.0649 40 1 9.6533 7.5712 1.0679 41 1 9.5783 6.0764 0.0880 42 1 12.1780 8.3240 0.5946 43 1 8.8573 4.9807 3.7428 44 1 9.3908 3.7876 2.5259 45 1 8.0964 3.0595 1.0469 46 1 7.8184 4.3575 -0.1472 47 1 4.5738 -0.1919 1.0215 48 1 3.7102 -0.7805 -0.4192 49 1 5.1730 0.2167 -0.6039 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041409673.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:16 Heat of formation + Delta-G solvation = -18.018216 kcal Electronic energy + Delta-G solvation = -30659.884181 eV Core-core repulsion = 26587.567551 eV Total energy + Delta-G solvation = -4072.316630 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.23801 -41.27837 -39.87694 -38.88672 -37.28653 -34.85614 -34.57160 -32.55079 -31.58819 -30.69073 -29.78195 -28.99400 -28.49550 -27.38598 -25.99788 -24.50135 -23.66884 -23.33319 -22.18729 -20.88404 -20.23736 -19.10756 -18.71147 -18.56910 -17.57912 -17.45781 -16.89415 -16.84932 -16.73636 -16.56351 -15.97567 -15.59085 -15.33155 -15.07393 -14.85712 -14.57585 -14.25420 -14.03798 -13.94616 -13.83427 -13.79487 -13.71124 -13.45907 -13.06995 -13.03266 -12.90892 -12.83762 -12.74192 -12.66844 -12.45655 -12.35854 -11.97864 -11.81897 -11.55123 -11.47407 -11.35091 -11.16161 -10.73422 -10.57975 -10.49537 -9.78753 -9.52936 -8.86968 -7.76387 -5.20128 -0.45157 0.07510 1.46712 1.47653 1.47903 1.57814 1.71127 2.24062 2.50150 2.57884 3.18321 3.32111 3.40372 3.43605 3.53805 3.58294 3.64318 3.65434 3.78839 3.96717 4.12918 4.20747 4.29254 4.36159 4.38958 4.42348 4.51713 4.57907 4.60497 4.61152 4.65576 4.73027 4.77343 4.79300 4.89288 4.93817 5.01710 5.02588 5.06783 5.12533 5.21574 5.29237 5.33333 5.36310 5.48606 5.66080 5.84618 6.14103 6.32729 6.35550 6.71232 6.91479 7.12319 7.79574 8.43389 9.25629 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.030014 B = 0.002202 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.663394 B =12714.546702 C =13045.735722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.073 3.927 4 C 0.045 3.955 5 N -0.463 5.463 6 C 0.102 3.898 7 C -0.153 4.153 8 C 0.578 3.422 9 O -0.569 6.569 10 N -0.604 5.604 11 C 0.098 3.902 12 C -0.106 4.106 13 C -0.070 4.070 14 C -0.111 4.111 15 C 0.153 3.847 16 N -0.626 5.626 17 C -0.234 4.234 18 H 0.081 0.919 19 C -0.070 4.070 20 N -0.949 5.949 21 Si 0.979 3.021 22 H -0.267 1.267 23 H -0.296 1.296 24 H -0.289 1.289 25 C 0.147 3.853 26 C 0.135 3.865 27 C -0.039 4.039 28 C -0.121 4.121 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.123 0.877 32 H 0.195 0.805 33 H 0.178 0.822 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.072 0.928 41 H -0.022 1.022 42 H 0.246 0.754 43 H 0.043 0.957 44 H 0.016 0.984 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.079 0.921 48 H 0.085 0.915 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.931 -11.714 1.672 30.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.025 3.975 4 C -0.112 4.112 5 N -0.172 5.172 6 C -0.056 4.056 7 C -0.158 4.158 8 C 0.366 3.634 9 O -0.450 6.450 10 N -0.336 5.336 11 C -0.023 4.023 12 C -0.144 4.144 13 C -0.071 4.071 14 C -0.150 4.150 15 C 0.028 3.972 16 N -0.353 5.353 17 C -0.363 4.363 18 H 0.098 0.902 19 C -0.262 4.262 20 N -0.599 5.599 21 Si 0.807 3.193 22 H -0.191 1.191 23 H -0.224 1.224 24 H -0.216 1.216 25 C 0.022 3.978 26 C 0.012 3.988 27 C -0.048 4.048 28 C -0.178 4.178 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.141 0.859 32 H 0.212 0.788 33 H 0.195 0.805 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.128 0.872 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.090 0.910 41 H -0.004 1.004 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.034 0.966 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.097 0.903 48 H 0.104 0.896 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -27.880 -11.508 1.234 30.187 hybrid contribution 2.002 -0.478 -0.262 2.075 sum -25.878 -11.986 0.972 28.535 Atomic orbital electron populations 1.23520 0.75483 1.06348 1.02953 1.86095 1.24037 1.24839 1.88221 1.19697 0.91601 0.87037 0.99168 1.23591 1.02165 0.86230 0.99259 1.67661 1.11484 1.26628 1.11476 1.23087 0.88490 0.98325 0.95681 1.20474 0.93049 0.94846 1.07413 1.17950 0.87238 0.78904 0.79271 1.90741 1.65604 1.45505 1.43104 1.48621 1.08952 1.37916 1.38128 1.22846 0.95726 0.94970 0.88774 1.22718 0.91274 1.04150 0.96298 1.21367 0.95673 0.94946 0.95098 1.22738 0.96496 0.94806 1.00925 1.21779 0.89419 0.98104 0.87861 1.44952 1.10497 1.40940 1.38876 1.19484 0.88217 1.15176 1.13462 0.90151 1.25623 1.02493 0.99153 0.98954 1.70072 1.36030 1.26197 1.27612 0.84998 0.79491 0.77459 0.77322 1.19100 1.22355 1.21632 1.21277 0.88246 0.91895 0.96413 1.21646 0.80948 0.97345 0.98824 1.19863 0.92045 0.95331 0.97560 1.20856 0.99608 0.93882 1.03423 0.90764 0.91057 0.85925 0.78804 0.80510 0.88602 0.88678 0.89660 0.87186 0.90300 0.89998 0.91004 1.00399 0.94444 0.93891 0.96586 0.92677 0.92885 0.90269 0.89574 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.82 113.37 1.11 1.17 16 2 O -0.32 -4.72 9.57 -92.67 -0.89 -5.60 16 3 C 0.07 1.30 6.68 22.56 0.15 1.45 16 4 C 0.05 0.69 10.21 84.83 0.87 1.56 16 5 N -0.46 -8.78 10.34 -194.39 -2.01 -10.79 16 6 C 0.10 2.03 9.50 85.03 0.81 2.84 16 7 C -0.15 -3.63 5.25 -20.01 -0.11 -3.73 16 8 C 0.58 16.97 7.09 86.79 0.62 17.58 16 9 O -0.57 -21.17 14.97 -3.87 -0.06 -21.23 16 10 N -0.60 -16.10 3.34 -815.73 -2.72 -18.83 16 11 C 0.10 1.82 5.31 87.02 0.46 2.28 16 12 C -0.11 -2.23 5.94 31.65 0.19 -2.04 16 13 C -0.07 -2.16 0.61 -51.87 -0.03 -2.19 16 14 C -0.11 -3.80 5.85 31.57 0.18 -3.61 16 15 C 0.15 7.48 5.85 86.93 0.51 7.98 16 16 N -0.63 -31.99 3.41 -693.06 -2.36 -34.35 16 17 C -0.23 -13.16 10.28 84.03 0.86 -12.30 16 18 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 19 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 20 N -0.95 -57.01 10.09 21.65 0.22 -56.79 16 21 Si 0.98 46.13 29.55 68.60 2.03 48.16 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 25 C 0.15 5.82 6.51 86.14 0.56 6.38 16 26 C 0.13 4.40 6.03 86.14 0.52 4.92 16 27 C -0.04 -0.88 5.96 -19.30 -0.12 -1.00 16 28 C -0.12 -2.75 9.42 71.24 0.67 -2.08 16 29 H 0.07 0.18 7.67 -2.39 -0.02 0.16 16 30 H 0.07 0.21 7.67 -2.39 -0.02 0.19 16 31 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.20 1.51 6.30 -2.91 -0.02 1.49 16 33 H 0.18 2.92 6.42 -2.91 -0.02 2.90 16 34 H 0.10 1.43 7.14 -2.39 -0.02 1.41 16 35 H 0.09 1.44 7.49 -2.39 -0.02 1.42 16 36 H 0.08 1.69 8.08 -2.39 -0.02 1.67 16 37 H 0.11 1.92 7.78 -2.39 -0.02 1.90 16 38 H 0.08 2.40 7.94 -2.39 -0.02 2.38 16 39 H 0.08 2.57 7.82 -2.39 -0.02 2.55 16 40 H 0.07 4.00 5.89 -2.39 -0.01 3.99 16 41 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 42 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 43 H 0.04 1.61 7.86 -2.39 -0.02 1.59 16 44 H 0.02 0.67 7.41 -2.39 -0.02 0.65 16 45 H 0.05 1.98 7.44 -2.38 -0.02 1.96 16 46 H 0.05 1.96 7.78 -2.39 -0.02 1.94 16 47 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.09 1.70 7.45 -2.39 -0.02 1.68 16 49 H 0.08 2.12 5.69 -2.39 -0.01 2.11 16 Total: -1.00 -75.43 382.81 2.89 -72.53 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.97 Total: 11.21 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 7.73 Total: 15.70 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -6.88 Total: -120.77 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.95 Total: -26.83 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -75.43 2.89 -72.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041409673.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.515 kcal (2) G-P(sol) polarization free energy of solvation -75.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds