Wall clock time and date at job start Wed Apr 1 2020 05:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40197 * 120.36624 * 2 1 4 4 C 1.35346 * 119.94702 * 179.97438 * 3 2 1 5 5 N 1.35753 * 120.70498 * 0.02562 * 4 3 2 6 6 C 1.46499 * 119.62617 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47615 * 90.00150 * 6 5 4 8 8 O 1.21286 * 119.99247 * 359.97438 * 7 6 5 9 9 N 1.34768 * 120.00348 * 179.97438 * 7 6 5 10 10 C 1.48257 * 127.00320 * 0.02562 * 9 7 6 11 11 C 1.55250 * 103.44935 * 141.54190 * 10 9 7 12 12 C 1.53239 * 102.46140 * 36.19837 * 11 10 9 13 13 C 1.53717 * 111.51942 * 101.30378 * 12 11 10 14 14 C 1.54581 * 102.78513 * 86.20226 * 13 12 11 15 15 N 1.47131 * 107.32664 * 20.89107 * 14 13 12 16 16 C 1.36934 * 125.60583 * 180.91579 * 15 14 13 17 17 H 1.08004 * 120.00269 * 173.99766 * 16 15 14 18 18 C 1.38807 * 120.00401 * 353.99875 * 16 15 14 19 19 N 1.31619 * 119.99583 * 6.88278 * 18 16 15 20 20 Si 1.86796 * 120.00502 * 186.88260 * 18 16 15 21 21 H 1.48495 * 109.47358 * 94.98334 * 20 18 16 22 22 H 1.48506 * 109.47418 * 214.98538 * 20 18 16 23 23 H 1.48506 * 109.46851 * 334.98270 * 20 18 16 24 24 C 1.47705 * 108.78552 * 1.17497 * 15 14 13 25 25 C 1.47891 * 127.00319 * 179.97438 * 9 7 6 26 26 C 1.34661 * 120.75108 * 0.25293 * 5 4 3 27 27 O 1.22057 * 119.98882 * 179.70613 * 26 5 4 28 28 C 1.36393 * 120.36947 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47563 * 90.00025 * 1 2 3 30 30 H 1.09006 * 109.47307 * 209.99895 * 1 2 3 31 31 H 1.09003 * 109.47403 * 329.99707 * 1 2 3 32 32 H 1.08004 * 120.02375 * 359.95656 * 3 2 1 33 33 H 1.08001 * 119.64765 * 180.02562 * 4 3 2 34 34 H 1.09002 * 109.47047 * 329.99763 * 6 5 4 35 35 H 1.09008 * 109.46747 * 210.00214 * 6 5 4 36 36 H 1.08999 * 110.61823 * 260.03287 * 10 9 7 37 37 H 1.08995 * 110.62240 * 23.04660 * 10 9 7 38 38 H 1.09002 * 110.81440 * 277.95693 * 11 10 9 39 39 H 1.09001 * 110.81013 * 154.44058 * 11 10 9 40 40 H 1.09006 * 110.75113 * 327.87617 * 13 12 11 41 41 H 1.09001 * 110.74756 * 204.52863 * 13 12 11 42 42 H 1.09002 * 109.87242 * 261.46037 * 14 13 12 43 43 H 1.09000 * 109.98943 * 140.39216 * 14 13 12 44 44 H 0.97005 * 119.99957 * 180.02562 * 19 18 16 45 45 H 1.09009 * 110.38678 * 95.95499 * 24 15 14 46 46 H 1.08997 * 110.39273 * 218.33314 * 24 15 14 47 47 H 1.08994 * 110.04537 * 85.88541 * 25 9 7 48 48 H 1.09000 * 110.09266 * 324.43071 * 25 9 7 49 49 H 1.08006 * 120.34464 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5691 1.1997 0.0005 5 7 4.2537 0.0275 0.0005 6 6 5.7186 0.0443 0.0005 7 6 6.2211 0.0501 1.4213 8 8 5.4329 0.0415 2.3432 9 7 7.5460 0.0648 1.6676 10 6 8.6395 0.0774 0.6665 11 6 9.6936 1.0281 1.2952 12 6 9.5773 0.7090 2.7895 13 6 10.7127 -0.2147 3.2589 14 6 11.8473 0.7805 3.5932 15 7 11.2258 2.0960 3.8122 16 6 11.8934 3.2528 4.1141 17 1 11.3573 4.1892 4.1612 18 6 13.2593 3.2222 4.3594 19 7 13.9370 2.1098 4.1704 20 14 14.1356 4.7594 4.9579 21 1 14.2274 4.7317 6.4398 22 1 15.5020 4.8079 4.3782 23 1 13.3741 5.9610 4.5315 24 6 9.7628 1.9623 3.6591 25 6 8.2053 0.0728 2.9914 26 6 3.6017 -1.1507 -0.0051 27 8 4.2312 -2.1964 -0.0104 28 6 2.1965 -1.1768 0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.6821 2.1486 -0.0007 33 1 4.1102 2.1344 0.0009 34 1 6.0717 0.9384 -0.5133 35 1 6.0922 -0.8415 -0.5134 36 1 9.0531 -0.9228 0.5373 37 1 8.2844 0.4731 -0.2850 38 1 9.4400 2.0702 1.1009 39 1 10.6929 0.7964 0.9264 40 1 11.0156 -0.8913 2.4597 41 1 10.4146 -0.7728 4.1464 42 1 12.5487 0.8361 2.7606 43 1 12.3684 0.4620 4.4960 44 1 14.8915 2.0882 4.3422 45 1 9.2901 1.8260 4.6319 46 1 9.3521 2.8375 3.1557 47 1 8.3173 -0.9471 3.3591 48 1 7.6203 0.6623 3.6974 49 1 1.6682 -2.1188 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041715383.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:51 Heat of formation + Delta-G solvation = 2.398265 kcal Electronic energy + Delta-G solvation = -30325.417853 eV Core-core repulsion = 26253.986549 eV Total energy + Delta-G solvation = -4071.431305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.72669 -40.17986 -38.46181 -37.23007 -35.81797 -35.44607 -32.78349 -31.03537 -30.33511 -29.71183 -29.27106 -28.63942 -27.27264 -25.37924 -23.96944 -23.73125 -22.82253 -21.85664 -20.27900 -19.70123 -18.88561 -17.80492 -17.75406 -17.31999 -16.76530 -16.27744 -15.99516 -15.73973 -15.05897 -14.73735 -14.55484 -14.42174 -14.27830 -13.95070 -13.87014 -13.71329 -13.42142 -13.00579 -12.86221 -12.71666 -12.60078 -12.37063 -12.27292 -12.00291 -11.97165 -11.90659 -11.58199 -11.32949 -11.19344 -10.92776 -10.81221 -10.42886 -10.23174 -10.16509 -10.05698 -9.95118 -9.86375 -9.74731 -9.64667 -8.74978 -8.60521 -8.20850 -6.85339 -5.75613 -3.07765 0.56717 1.65224 2.18338 2.42263 2.88959 3.37753 3.43340 3.44944 3.45044 4.20098 4.21805 4.29302 4.42960 4.46740 4.66149 4.70491 4.79167 4.86691 4.93062 4.94421 5.04832 5.17490 5.21228 5.25788 5.36777 5.39904 5.47130 5.52348 5.67651 5.72752 5.77301 5.79868 5.89401 5.97919 5.99348 6.10189 6.17578 6.25570 6.28673 6.35150 6.46992 6.52176 6.69323 6.79095 6.82053 7.41195 7.51578 7.60201 7.79301 7.83103 7.97011 8.22359 9.18751 9.78954 10.45544 11.36390 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.026183 B = 0.002086 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.157739 B =13421.273007 C =13967.073611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.015 3.985 3 C -0.230 4.230 4 C 0.146 3.854 5 N -0.482 5.482 6 C 0.075 3.925 7 C 0.519 3.481 8 O -0.532 6.532 9 N -0.615 5.615 10 C 0.094 3.906 11 C -0.107 4.107 12 C -0.086 4.086 13 C -0.132 4.132 14 C 0.179 3.821 15 N -0.604 5.604 16 C -0.228 4.228 17 H 0.077 0.923 18 C -0.007 4.007 19 N -0.920 5.920 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.151 3.849 25 C 0.124 3.876 26 C 0.522 3.478 27 O -0.552 6.552 28 C -0.249 4.249 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.145 0.855 33 H 0.161 0.839 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.043 0.957 43 H 0.045 0.955 44 H 0.252 0.748 45 H 0.021 0.979 46 H 0.038 0.962 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.767 -2.931 -13.280 25.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.012 3.988 3 C -0.253 4.253 4 C 0.019 3.981 5 N -0.192 5.192 6 C -0.050 4.050 7 C 0.305 3.695 8 O -0.409 6.409 9 N -0.349 5.349 10 C -0.028 4.028 11 C -0.145 4.145 12 C -0.088 4.088 13 C -0.171 4.171 14 C 0.054 3.946 15 N -0.331 5.331 16 C -0.356 4.356 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.567 5.567 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.025 3.975 25 C 0.002 3.998 26 C 0.325 3.675 27 O -0.435 6.435 28 C -0.270 4.270 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.163 0.837 33 H 0.179 0.821 34 H 0.139 0.861 35 H 0.147 0.853 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.038 0.962 46 H 0.057 0.943 47 H 0.087 0.913 48 H 0.096 0.904 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -21.629 -3.559 -12.763 25.365 hybrid contribution 0.687 0.880 0.448 1.203 sum -20.942 -2.679 -12.316 24.443 Atomic orbital electron populations 1.20928 0.90354 1.03616 1.03027 1.20206 0.96774 0.92667 0.89169 1.20521 0.92311 0.98948 1.13557 1.21907 0.93654 0.89504 0.93013 1.45053 1.07191 1.07348 1.59620 1.21773 0.79586 1.07256 0.96423 1.20187 0.81159 0.77116 0.90998 1.90755 1.54301 1.49986 1.45858 1.48919 1.04222 1.72196 1.09612 1.22821 0.87534 1.00826 0.91663 1.22473 0.98871 0.99114 0.94023 1.21654 0.93169 0.97961 0.95983 1.22830 0.96569 0.97756 0.99899 1.21205 0.90783 0.82511 1.00085 1.44536 0.99351 1.05993 1.83179 1.19037 0.90800 0.85654 1.40145 0.90530 1.24813 0.96468 0.97344 1.01736 1.69973 1.07197 1.25517 1.54013 0.86136 0.79037 0.82135 0.78681 1.21642 1.21801 1.20675 1.21438 0.87457 0.93410 0.95239 1.21972 0.92504 1.01016 0.84320 1.17091 0.89372 0.82406 0.78658 1.90955 1.69156 1.30275 1.53091 1.21904 0.92203 0.99569 1.13342 0.90120 0.90815 0.90730 0.83680 0.82119 0.86080 0.85277 0.90429 0.90502 0.90630 0.89316 0.91865 0.92182 0.93887 0.93664 0.93762 0.96182 0.94335 0.91279 0.90353 0.83577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 10.03 36.00 0.36 -0.26 16 2 C 0.02 0.13 5.89 -104.55 -0.62 -0.49 16 3 C -0.23 -1.67 9.71 -39.88 -0.39 -2.06 16 4 C 0.15 1.18 10.28 -16.85 -0.17 1.01 16 5 N -0.48 -5.34 2.07 -121.06 -0.25 -5.59 16 6 C 0.08 0.75 4.76 -5.19 -0.02 0.72 16 7 C 0.52 7.20 7.96 -10.99 -0.09 7.11 16 8 O -0.53 -9.59 16.78 5.55 0.09 -9.50 16 9 N -0.62 -8.08 3.31 -170.00 -0.56 -8.64 16 10 C 0.09 0.98 6.96 -1.88 -0.01 0.97 16 11 C -0.11 -1.44 6.12 -25.42 -0.16 -1.59 16 12 C -0.09 -1.37 0.75 -153.88 -0.12 -1.48 16 13 C -0.13 -2.28 5.65 -25.53 -0.14 -2.43 16 14 C 0.18 4.12 5.33 -2.87 -0.02 4.10 16 15 N -0.60 -14.78 3.41 -170.36 -0.58 -15.36 16 16 C -0.23 -6.19 10.26 -15.06 -0.15 -6.35 16 17 H 0.08 2.02 7.84 -52.48 -0.41 1.61 16 18 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 19 N -0.92 -26.42 10.35 55.49 0.57 -25.85 16 20 Si 0.91 21.76 29.56 -169.99 -5.02 16.74 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 24 C 0.15 2.99 6.10 -3.03 -0.02 2.97 16 25 C 0.12 1.84 6.31 -3.50 -0.02 1.82 16 26 C 0.52 7.21 7.40 -15.44 -0.11 7.10 16 27 O -0.55 -9.63 16.63 4.87 0.08 -9.55 16 28 C -0.25 -2.75 9.65 -39.38 -0.38 -3.13 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 31 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 32 H 0.15 0.65 8.06 -52.48 -0.42 0.22 16 33 H 0.16 0.78 8.04 -52.49 -0.42 0.36 16 34 H 0.12 0.70 7.77 -51.93 -0.40 0.29 16 35 H 0.13 1.28 7.38 -51.92 -0.38 0.89 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.56 7.25 -51.93 -0.38 0.19 16 38 H 0.08 1.04 7.66 -51.93 -0.40 0.65 16 39 H 0.09 1.25 7.79 -51.93 -0.40 0.85 16 40 H 0.06 0.97 7.95 -51.93 -0.41 0.55 16 41 H 0.06 1.01 7.91 -51.93 -0.41 0.60 16 42 H 0.04 1.09 7.55 -51.93 -0.39 0.69 16 43 H 0.05 1.18 7.35 -51.93 -0.38 0.80 16 44 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.02 0.41 7.90 -51.92 -0.41 0.00 16 46 H 0.04 0.75 7.72 -51.93 -0.40 0.35 16 47 H 0.07 1.02 7.62 -51.93 -0.40 0.62 16 48 H 0.08 1.26 7.54 -51.93 -0.39 0.86 16 49 H 0.15 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 394.25 15.07 5.94 5.94 Total: -1.00 -36.53 394.25 -9.55 -46.07 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -7.66 Total: -1.99 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -2.16 Total: 7.71 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.82 Total: -55.43 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: 0.17 Total: -19.05 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.53 -9.55 -46.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041715383.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.473 kcal (2) G-P(sol) polarization free energy of solvation -36.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds