Wall clock time and date at job start Wed Apr 1 2020 05:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40197 * 120.36624 * 2 1 4 4 C 1.35346 * 119.94702 * 179.97438 * 3 2 1 5 5 N 1.35753 * 120.70498 * 0.02562 * 4 3 2 6 6 C 1.46499 * 119.62617 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47615 * 90.00150 * 6 5 4 8 8 O 1.21286 * 119.99247 * 359.97438 * 7 6 5 9 9 N 1.34768 * 120.00348 * 179.97438 * 7 6 5 10 10 C 1.48257 * 127.00320 * 0.02562 * 9 7 6 11 11 C 1.55250 * 103.44935 * 141.54190 * 10 9 7 12 12 C 1.53239 * 102.46140 * 36.19837 * 11 10 9 13 13 C 1.53717 * 111.51942 * 101.30378 * 12 11 10 14 14 C 1.54581 * 102.78513 * 86.20226 * 13 12 11 15 15 N 1.47131 * 107.32664 * 20.89107 * 14 13 12 16 16 C 1.36934 * 125.60583 * 180.91579 * 15 14 13 17 17 H 1.08004 * 120.00269 * 173.99766 * 16 15 14 18 18 C 1.38807 * 120.00401 * 353.99875 * 16 15 14 19 19 N 1.31619 * 119.99583 * 6.88278 * 18 16 15 20 20 Si 1.86796 * 120.00502 * 186.88260 * 18 16 15 21 21 H 1.48495 * 109.47358 * 94.98334 * 20 18 16 22 22 H 1.48506 * 109.47418 * 214.98538 * 20 18 16 23 23 H 1.48506 * 109.46851 * 334.98270 * 20 18 16 24 24 C 1.47705 * 108.78552 * 1.17497 * 15 14 13 25 25 C 1.47891 * 127.00319 * 179.97438 * 9 7 6 26 26 C 1.34661 * 120.75108 * 0.25293 * 5 4 3 27 27 O 1.22057 * 119.98882 * 179.70613 * 26 5 4 28 28 C 1.36393 * 120.36947 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47563 * 90.00025 * 1 2 3 30 30 H 1.09006 * 109.47307 * 209.99895 * 1 2 3 31 31 H 1.09003 * 109.47403 * 329.99707 * 1 2 3 32 32 H 1.08004 * 120.02375 * 359.95656 * 3 2 1 33 33 H 1.08001 * 119.64765 * 180.02562 * 4 3 2 34 34 H 1.09002 * 109.47047 * 329.99763 * 6 5 4 35 35 H 1.09008 * 109.46747 * 210.00214 * 6 5 4 36 36 H 1.08999 * 110.61823 * 260.03287 * 10 9 7 37 37 H 1.08995 * 110.62240 * 23.04660 * 10 9 7 38 38 H 1.09002 * 110.81440 * 277.95693 * 11 10 9 39 39 H 1.09001 * 110.81013 * 154.44058 * 11 10 9 40 40 H 1.09006 * 110.75113 * 327.87617 * 13 12 11 41 41 H 1.09001 * 110.74756 * 204.52863 * 13 12 11 42 42 H 1.09002 * 109.87242 * 261.46037 * 14 13 12 43 43 H 1.09000 * 109.98943 * 140.39216 * 14 13 12 44 44 H 0.97005 * 119.99957 * 180.02562 * 19 18 16 45 45 H 1.09009 * 110.38678 * 95.95499 * 24 15 14 46 46 H 1.08997 * 110.39273 * 218.33314 * 24 15 14 47 47 H 1.08994 * 110.04537 * 85.88541 * 25 9 7 48 48 H 1.09000 * 110.09266 * 324.43071 * 25 9 7 49 49 H 1.08006 * 120.34464 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5691 1.1997 0.0005 5 7 4.2537 0.0275 0.0005 6 6 5.7186 0.0443 0.0005 7 6 6.2211 0.0501 1.4213 8 8 5.4329 0.0415 2.3432 9 7 7.5460 0.0648 1.6676 10 6 8.6395 0.0774 0.6665 11 6 9.6936 1.0281 1.2952 12 6 9.5773 0.7090 2.7895 13 6 10.7127 -0.2147 3.2589 14 6 11.8473 0.7805 3.5932 15 7 11.2258 2.0960 3.8122 16 6 11.8934 3.2528 4.1141 17 1 11.3573 4.1892 4.1612 18 6 13.2593 3.2222 4.3594 19 7 13.9370 2.1098 4.1704 20 14 14.1356 4.7594 4.9579 21 1 14.2274 4.7317 6.4398 22 1 15.5020 4.8079 4.3782 23 1 13.3741 5.9610 4.5315 24 6 9.7628 1.9623 3.6591 25 6 8.2053 0.0728 2.9914 26 6 3.6017 -1.1507 -0.0051 27 8 4.2312 -2.1964 -0.0104 28 6 2.1965 -1.1768 0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.6821 2.1486 -0.0007 33 1 4.1102 2.1344 0.0009 34 1 6.0717 0.9384 -0.5133 35 1 6.0922 -0.8415 -0.5134 36 1 9.0531 -0.9228 0.5373 37 1 8.2844 0.4731 -0.2850 38 1 9.4400 2.0702 1.1009 39 1 10.6929 0.7964 0.9264 40 1 11.0156 -0.8913 2.4597 41 1 10.4146 -0.7728 4.1464 42 1 12.5487 0.8361 2.7606 43 1 12.3684 0.4620 4.4960 44 1 14.8915 2.0882 4.3422 45 1 9.2901 1.8260 4.6319 46 1 9.3521 2.8375 3.1557 47 1 8.3173 -0.9471 3.3591 48 1 7.6203 0.6623 3.6974 49 1 1.6682 -2.1188 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041715383.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:49 Heat of formation + Delta-G solvation = -21.001011 kcal Electronic energy + Delta-G solvation = -30326.432522 eV Core-core repulsion = 26253.986549 eV Total energy + Delta-G solvation = -4072.445974 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -42.54653 -41.34635 -39.73002 -38.10673 -37.24989 -36.22441 -34.52996 -32.28021 -31.35250 -30.62694 -30.56124 -29.98192 -28.22985 -26.98287 -25.14262 -24.65959 -24.02860 -22.60896 -22.10609 -20.69273 -20.21942 -18.86664 -18.62322 -18.53935 -18.10034 -17.16373 -16.97938 -16.76099 -16.69257 -16.03302 -15.76835 -15.59679 -15.29730 -15.16569 -15.02068 -14.49855 -14.33171 -14.18303 -14.11322 -13.79701 -13.58891 -13.43413 -13.34242 -13.11671 -13.01734 -12.96230 -12.84459 -12.62779 -12.56022 -12.48824 -12.46094 -12.00429 -11.84107 -11.56740 -11.37248 -11.31765 -11.28695 -11.09556 -10.67676 -10.58886 -9.83525 -8.99144 -8.87275 -7.85514 -5.19100 -0.12448 0.91494 1.37730 1.41985 1.45736 1.47897 1.56144 1.95753 2.49483 2.65891 3.26914 3.33584 3.52312 3.59991 3.62555 3.68486 3.73052 3.86119 3.91895 4.05237 4.14673 4.23210 4.25851 4.33836 4.38996 4.39809 4.58350 4.62547 4.72126 4.76592 4.77644 4.84143 4.84879 4.89452 4.91494 4.98612 5.06491 5.11146 5.17745 5.24862 5.32618 5.38905 5.47529 5.49308 5.65901 5.69757 5.79596 6.04974 6.20638 6.40088 6.90015 6.98227 7.11453 7.78165 8.43358 9.25078 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.026183 B = 0.002086 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.157739 B =13421.273007 C =13967.073611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.033 3.967 3 C -0.229 4.229 4 C 0.138 3.862 5 N -0.484 5.484 6 C 0.078 3.922 7 C 0.515 3.485 8 O -0.582 6.582 9 N -0.614 5.614 10 C 0.101 3.899 11 C -0.105 4.105 12 C -0.072 4.072 13 C -0.118 4.118 14 C 0.188 3.812 15 N -0.623 5.623 16 C -0.239 4.239 17 H 0.080 0.920 18 C -0.064 4.064 19 N -0.948 5.948 20 Si 0.974 3.026 21 H -0.292 1.292 22 H -0.294 1.294 23 H -0.267 1.267 24 C 0.147 3.853 25 C 0.130 3.870 26 C 0.503 3.497 27 O -0.611 6.611 28 C -0.291 4.291 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.182 0.818 33 H 0.200 0.800 34 H 0.174 0.826 35 H 0.131 0.869 36 H 0.091 0.909 37 H 0.120 0.880 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.015 0.985 43 H 0.003 0.997 44 H 0.246 0.754 45 H 0.013 0.987 46 H 0.043 0.957 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.769 -0.970 -15.333 28.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.029 3.971 3 C -0.251 4.251 4 C 0.012 3.988 5 N -0.193 5.193 6 C -0.046 4.046 7 C 0.304 3.696 8 O -0.462 6.462 9 N -0.347 5.347 10 C -0.020 4.020 11 C -0.143 4.143 12 C -0.074 4.074 13 C -0.156 4.156 14 C 0.063 3.937 15 N -0.349 5.349 16 C -0.368 4.368 17 H 0.098 0.902 18 C -0.258 4.258 19 N -0.597 5.597 20 Si 0.803 3.197 21 H -0.219 1.219 22 H -0.221 1.221 23 H -0.191 1.191 24 C 0.022 3.978 25 C 0.006 3.994 26 C 0.308 3.692 27 O -0.499 6.499 28 C -0.313 4.313 29 H 0.117 0.883 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.199 0.801 33 H 0.217 0.783 34 H 0.191 0.809 35 H 0.148 0.852 36 H 0.109 0.891 37 H 0.138 0.862 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.033 0.967 43 H 0.021 0.979 44 H 0.056 0.944 45 H 0.031 0.969 46 H 0.061 0.939 47 H 0.089 0.911 48 H 0.081 0.919 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -23.663 -1.555 -14.845 27.977 hybrid contribution 1.225 0.380 1.136 1.713 sum -22.438 -1.175 -13.709 26.321 Atomic orbital electron populations 1.21041 0.87957 1.04533 1.04394 1.20644 0.98542 0.92078 0.85843 1.21061 0.92383 0.99864 1.11839 1.22676 0.94477 0.89669 0.91954 1.45095 1.07833 1.07551 1.58844 1.21975 0.79103 1.09774 0.93772 1.20909 0.80719 0.75780 0.92195 1.90732 1.55518 1.52252 1.47734 1.48967 1.04737 1.71621 1.09372 1.22977 0.85664 1.01004 0.92317 1.22439 0.99816 1.00002 0.92039 1.21479 0.93253 0.95480 0.97171 1.22695 0.94826 0.96924 1.01154 1.20948 0.92191 0.83528 0.97038 1.44812 1.01417 1.05764 1.82938 1.19404 0.91249 0.86834 1.39356 0.90211 1.25619 0.97374 1.00260 1.02518 1.70183 1.06914 1.27373 1.55190 0.85123 0.77649 0.79344 0.77616 1.21904 1.22091 1.19135 1.21589 0.84786 0.95659 0.95776 1.21724 0.91577 1.00622 0.85434 1.17517 0.90327 0.82616 0.78698 1.90896 1.70232 1.32188 1.56576 1.21901 0.91519 1.00818 1.17014 0.88292 0.90905 0.88822 0.80060 0.78302 0.80883 0.85161 0.89091 0.86160 0.90686 0.89819 0.89139 0.91711 0.96667 0.97858 0.94437 0.96926 0.93850 0.91085 0.91880 0.84133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 10.03 71.24 0.71 -0.20 16 2 C 0.03 0.48 5.89 -19.82 -0.12 0.36 16 3 C -0.23 -2.51 9.71 22.08 0.21 -2.29 16 4 C 0.14 1.75 10.28 83.42 0.86 2.60 16 5 N -0.48 -9.84 2.07 -655.06 -1.36 -11.19 16 6 C 0.08 1.33 4.76 85.63 0.41 1.74 16 7 C 0.52 13.32 7.96 87.66 0.70 14.02 16 8 O -0.58 -20.71 16.78 -3.05 -0.05 -20.76 16 9 N -0.61 -14.63 3.31 -810.14 -2.68 -17.31 16 10 C 0.10 1.73 6.96 86.81 0.60 2.33 16 11 C -0.10 -2.56 6.12 31.45 0.19 -2.37 16 12 C -0.07 -2.21 0.75 -51.78 -0.04 -2.25 16 13 C -0.12 -4.01 5.65 31.37 0.18 -3.83 16 14 C 0.19 8.92 5.33 86.80 0.46 9.39 16 15 N -0.62 -31.04 3.41 -692.91 -2.36 -33.40 16 16 C -0.24 -13.18 10.26 84.03 0.86 -12.31 16 17 H 0.08 4.22 7.84 -2.91 -0.02 4.20 16 18 C -0.06 -3.63 5.48 84.86 0.47 -3.16 16 19 N -0.95 -56.23 10.35 21.65 0.22 -56.00 16 20 Si 0.97 45.29 29.56 68.60 2.03 47.32 16 21 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 22 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 24 C 0.15 5.81 6.10 86.37 0.53 6.34 16 25 C 0.13 3.69 6.31 85.97 0.54 4.24 16 26 C 0.50 14.07 7.40 84.82 0.63 14.70 16 27 O -0.61 -22.32 16.63 -5.50 -0.09 -22.41 16 28 C -0.29 -6.52 9.65 22.40 0.22 -6.31 16 29 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.07 0.59 8.09 -2.38 -0.02 0.57 16 31 H 0.09 0.38 8.10 -2.39 -0.02 0.36 16 32 H 0.18 0.65 8.06 -2.91 -0.02 0.62 16 33 H 0.20 0.87 8.04 -2.91 -0.02 0.85 16 34 H 0.17 1.03 7.77 -2.39 -0.02 1.01 16 35 H 0.13 2.27 7.38 -2.38 -0.02 2.25 16 36 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.12 1.08 7.25 -2.39 -0.02 1.06 16 38 H 0.07 1.87 7.66 -2.39 -0.02 1.85 16 39 H 0.08 2.18 7.79 -2.39 -0.02 2.16 16 40 H 0.09 2.61 7.95 -2.38 -0.02 2.59 16 41 H 0.06 2.15 7.91 -2.39 -0.02 2.13 16 42 H 0.02 0.79 7.55 -2.39 -0.02 0.77 16 43 H 0.00 0.17 7.35 -2.39 -0.02 0.16 16 44 H 0.25 14.26 8.31 -92.70 -0.77 13.48 16 45 H 0.01 0.53 7.90 -2.38 -0.02 0.51 16 46 H 0.04 1.66 7.72 -2.39 -0.02 1.64 16 47 H 0.07 2.02 7.62 -2.39 -0.02 2.00 16 48 H 0.06 2.01 7.54 -2.39 -0.02 1.99 16 49 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -86.57 394.25 4.06 -82.51 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: 0.94 Total: 8.25 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 7.41 Total: 22.99 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -6.18 Total: -117.90 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -0.14 Total: -43.17 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -86.57 4.06 -82.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041715383.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.508 kcal (2) G-P(sol) polarization free energy of solvation -86.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds