Wall clock time and date at job start Wed Apr 1 2020 05:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.40195 * 120.36257 * 2 1 4 4 C 1.35360 * 119.94236 * 179.76832 * 3 2 1 5 5 N 1.35754 * 120.69914 * 0.53261 * 4 3 2 6 6 C 1.46506 * 119.62264 * 179.72147 * 5 4 3 7 7 C 1.50706 * 109.46597 * 269.72765 * 6 5 4 8 8 O 1.21278 * 120.00077 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99527 * 179.97438 * 7 6 5 10 10 C 1.47607 * 126.92124 * 0.02725 * 9 7 6 11 11 C 1.54354 * 107.05274 * 154.97520 * 10 9 7 12 12 C 1.53092 * 104.62479 * 2.21995 * 11 10 9 13 13 C 1.53634 * 111.77385 * 259.50131 * 12 11 10 14 14 C 1.55179 * 101.41798 * 272.04968 * 13 12 11 15 15 N 1.47564 * 105.01106 * 324.52733 * 14 13 12 16 16 C 1.36933 * 125.67366 * 203.84141 * 15 14 13 17 17 H 1.08002 * 120.00011 * 170.08830 * 16 15 14 18 18 C 1.38813 * 120.00437 * 350.08503 * 16 15 14 19 19 N 1.31622 * 119.99600 * 350.39165 * 18 16 15 20 20 Si 1.86796 * 120.00135 * 170.38650 * 18 16 15 21 21 H 1.48497 * 109.46874 * 94.14625 * 20 18 16 22 22 H 1.48500 * 109.47323 * 214.14443 * 20 18 16 23 23 H 1.48497 * 109.47286 * 334.14495 * 20 18 16 24 24 C 1.47410 * 108.65001 * 23.85669 * 15 14 13 25 25 C 1.48407 * 126.91649 * 179.97438 * 9 7 6 26 26 C 1.34656 * 120.75507 * 359.44164 * 5 4 3 27 27 O 1.22060 * 119.98932 * 180.27698 * 26 5 4 28 28 C 1.36392 * 120.36851 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47267 * 269.97683 * 1 2 3 30 30 H 1.08999 * 109.47050 * 29.97650 * 1 2 3 31 31 H 1.09000 * 109.46726 * 149.97156 * 1 2 3 32 32 H 1.07993 * 120.03143 * 0.02562 * 3 2 1 33 33 H 1.08003 * 119.64573 * 180.24535 * 4 3 2 34 34 H 1.08994 * 109.47590 * 149.73001 * 6 5 4 35 35 H 1.08997 * 109.46979 * 29.72004 * 6 5 4 36 36 H 1.08995 * 109.92600 * 35.62245 * 10 9 7 37 37 H 1.09001 * 109.91764 * 274.32488 * 10 9 7 38 38 H 1.09007 * 110.40310 * 121.00486 * 11 10 9 39 39 H 1.08992 * 110.40324 * 243.31354 * 11 10 9 40 40 H 1.09002 * 111.03914 * 30.08682 * 13 12 11 41 41 H 1.08999 * 111.03514 * 154.01623 * 13 12 11 42 42 H 1.08999 * 110.33777 * 205.63622 * 14 13 12 43 43 H 1.09010 * 110.42038 * 83.45385 * 14 13 12 44 44 H 0.96996 * 119.99788 * 179.97438 * 19 18 16 45 45 H 1.08992 * 109.98839 * 238.53245 * 24 15 14 46 46 H 1.08997 * 110.01878 * 117.23762 * 24 15 14 47 47 H 1.09000 * 110.68304 * 99.19374 * 25 9 7 48 48 H 1.09004 * 110.68621 * 336.01697 * 25 9 7 49 49 H 1.08007 * 120.34744 * 359.95480 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2157 1.2097 0.0000 4 6 3.5693 1.1997 0.0047 5 7 4.2538 0.0274 -0.0013 6 6 5.7188 0.0443 -0.0022 7 6 6.2201 0.0501 -1.4234 8 8 5.4315 0.0406 -2.3447 9 7 7.5450 0.0658 -1.6705 10 6 8.6329 0.0783 -0.6729 11 6 9.8775 -0.5310 -1.3529 12 6 9.4299 -0.8237 -2.7873 13 6 9.0856 -2.3078 -2.9853 14 6 10.4703 -2.8964 -3.3649 15 7 11.1277 -1.8431 -4.1623 16 6 12.1252 -2.0412 -5.0793 17 1 12.4318 -1.2329 -5.7267 18 6 12.7424 -3.2807 -5.1768 19 7 12.5073 -4.2060 -4.2707 20 14 13.9064 -3.6356 -6.5940 21 1 15.3013 -3.3496 -6.1723 22 1 13.7903 -5.0637 -6.9842 23 1 13.5532 -2.7757 -7.7520 24 6 10.5322 -0.5422 -3.8073 25 6 8.2037 0.0730 -3.0003 26 6 3.6017 -1.1507 -0.0009 27 8 4.2312 -2.1965 -0.0013 28 6 2.1966 -1.1768 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8897 -0.5143 32 1 1.6822 2.1486 0.0004 33 1 4.1104 2.1345 0.0087 34 1 6.0927 -0.8415 0.5113 35 1 6.0721 0.9384 0.5114 36 1 8.3509 -0.5222 0.1918 37 1 8.8423 1.1026 -0.3647 38 1 10.7004 0.1839 -1.3499 39 1 10.1729 -1.4515 -0.8497 40 1 8.7127 -2.7496 -2.0612 41 1 8.3692 -2.4385 -3.7964 42 1 10.3471 -3.8010 -3.9604 43 1 11.0514 -3.1107 -2.4679 44 1 12.9382 -5.0723 -4.3390 45 1 10.1078 -0.0722 -4.6943 46 1 11.2893 0.1072 -3.3679 47 1 8.5085 1.0833 -3.2735 48 1 7.5448 -0.3498 -3.7587 49 1 1.6683 -2.1188 -0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041715384.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:55 Heat of formation + Delta-G solvation = 2.221577 kcal Electronic energy + Delta-G solvation = -30473.550733 eV Core-core repulsion = 26402.111767 eV Total energy + Delta-G solvation = -4071.438967 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.70842 -40.19622 -38.42143 -37.20206 -35.79441 -35.43331 -32.74540 -31.03955 -30.37524 -29.69743 -29.23947 -28.62065 -27.28705 -25.31895 -23.95610 -23.76960 -22.70767 -21.83966 -20.33539 -19.71954 -18.86348 -17.78685 -17.73029 -17.30300 -16.67101 -16.26072 -15.89670 -15.77473 -14.95538 -14.80120 -14.51788 -14.42424 -14.30374 -14.12979 -13.84899 -13.69965 -13.32588 -13.03023 -12.85285 -12.73879 -12.52903 -12.45124 -12.23990 -11.99564 -11.89670 -11.83719 -11.48591 -11.42724 -11.11992 -10.85024 -10.77324 -10.41824 -10.26792 -10.12242 -10.04301 -9.99798 -9.75902 -9.74425 -9.62528 -8.72760 -8.56147 -8.18661 -6.79545 -5.73725 -3.06121 0.58097 1.67048 2.19627 2.42551 2.90064 3.40092 3.46108 3.47294 3.48297 4.19048 4.21879 4.30176 4.44252 4.50036 4.65733 4.69508 4.79934 4.87631 4.93716 4.96058 5.07763 5.18849 5.20573 5.25544 5.35220 5.44577 5.48888 5.50117 5.68417 5.76476 5.79531 5.84979 5.87966 5.92298 6.01239 6.11518 6.20664 6.26665 6.32257 6.34262 6.53534 6.64437 6.72960 6.83763 6.84094 7.41855 7.52394 7.59241 7.79791 7.86745 7.97930 8.26477 9.19931 9.81811 10.49788 11.39354 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025886 B = 0.002139 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.409001 B =13088.984187 C =13414.668251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.013 3.987 3 C -0.230 4.230 4 C 0.144 3.856 5 N -0.482 5.482 6 C 0.075 3.925 7 C 0.520 3.480 8 O -0.531 6.531 9 N -0.614 5.614 10 C 0.097 3.903 11 C -0.115 4.115 12 C -0.082 4.082 13 C -0.130 4.130 14 C 0.176 3.824 15 N -0.602 5.602 16 C -0.229 4.229 17 H 0.076 0.924 18 C -0.008 4.008 19 N -0.917 5.917 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.152 3.848 25 C 0.123 3.877 26 C 0.521 3.479 27 O -0.547 6.547 28 C -0.246 4.246 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.145 0.855 33 H 0.160 0.840 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.027 0.973 44 H 0.253 0.747 45 H 0.026 0.974 46 H 0.026 0.974 47 H 0.073 0.927 48 H 0.084 0.916 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.710 15.056 14.522 28.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.010 3.990 3 C -0.253 4.253 4 C 0.018 3.982 5 N -0.193 5.193 6 C -0.050 4.050 7 C 0.306 3.694 8 O -0.407 6.407 9 N -0.348 5.348 10 C -0.026 4.026 11 C -0.153 4.153 12 C -0.083 4.083 13 C -0.169 4.169 14 C 0.051 3.949 15 N -0.329 5.329 16 C -0.357 4.357 17 H 0.093 0.907 18 C -0.204 4.204 19 N -0.564 5.564 20 Si 0.741 3.259 21 H -0.217 1.217 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.026 3.974 25 C 0.001 3.999 26 C 0.323 3.677 27 O -0.429 6.429 28 C -0.267 4.267 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.162 0.838 33 H 0.177 0.823 34 H 0.148 0.852 35 H 0.138 0.862 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.045 0.955 44 H 0.063 0.937 45 H 0.044 0.956 46 H 0.044 0.956 47 H 0.091 0.909 48 H 0.103 0.897 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -19.660 14.185 13.981 27.986 hybrid contribution 0.796 -0.140 -0.698 1.068 sum -18.864 14.045 13.282 27.010 Atomic orbital electron populations 1.20923 0.90369 1.03601 1.03000 1.20197 0.96761 0.92662 0.89403 1.20503 0.92308 0.98898 1.13624 1.21868 0.93621 0.89443 0.93304 1.45060 1.07154 1.07341 1.59748 1.21767 0.79632 1.07200 0.96418 1.20182 0.81171 0.77029 0.90989 1.90756 1.54183 1.49892 1.45898 1.48851 1.04166 1.72274 1.09551 1.22348 0.87477 1.00856 0.91886 1.22366 0.95851 1.01892 0.95148 1.21548 0.94735 0.96750 0.95258 1.22855 1.00395 0.93305 1.00324 1.21450 0.86554 0.92223 0.94695 1.44580 1.41486 1.00311 1.46484 1.19002 1.10048 0.97058 1.09619 0.90657 1.24824 0.99733 0.97144 0.98734 1.69961 1.46725 1.05558 1.34194 0.86135 0.80511 0.77401 0.81897 1.21651 1.21633 1.20617 1.21044 0.92105 0.90232 0.94020 1.22369 0.93277 0.99673 0.84561 1.17107 0.89386 0.82448 0.78734 1.90985 1.69076 1.30202 1.52612 1.21927 0.92221 0.99608 1.12993 0.90152 0.90782 0.90796 0.83763 0.82268 0.85234 0.86223 0.90893 0.91201 0.90108 0.89909 0.92223 0.92149 0.91504 0.95496 0.93717 0.95639 0.95584 0.90907 0.89714 0.83530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.03 36.01 0.36 -0.28 16 2 C 0.01 0.11 5.89 -104.55 -0.62 -0.50 16 3 C -0.23 -1.64 9.71 -39.87 -0.39 -2.02 16 4 C 0.14 1.12 10.28 -16.84 -0.17 0.95 16 5 N -0.48 -5.38 2.07 -121.06 -0.25 -5.63 16 6 C 0.08 0.75 4.89 -5.19 -0.03 0.73 16 7 C 0.52 7.23 7.96 -10.98 -0.09 7.14 16 8 O -0.53 -9.62 16.65 5.56 0.09 -9.53 16 9 N -0.61 -8.00 3.31 -170.16 -0.56 -8.57 16 10 C 0.10 0.99 6.77 -2.73 -0.02 0.97 16 11 C -0.11 -1.53 6.04 -25.97 -0.16 -1.69 16 12 C -0.08 -1.35 0.68 -154.03 -0.10 -1.45 16 13 C -0.13 -2.54 5.94 -25.25 -0.15 -2.69 16 14 C 0.18 4.26 5.39 -2.31 -0.01 4.25 16 15 N -0.60 -15.27 3.41 -170.42 -0.58 -15.85 16 16 C -0.23 -6.38 10.24 -15.06 -0.15 -6.54 16 17 H 0.08 2.03 7.85 -52.49 -0.41 1.62 16 18 C -0.01 -0.22 5.40 -17.43 -0.09 -0.31 16 19 N -0.92 -27.11 10.68 55.49 0.59 -26.52 16 20 Si 0.91 22.20 29.56 -169.99 -5.03 17.18 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.15 3.05 6.51 -3.65 -0.02 3.02 16 25 C 0.12 1.83 5.91 -2.79 -0.02 1.81 16 26 C 0.52 7.44 7.40 -15.45 -0.11 7.33 16 27 O -0.55 -10.02 16.64 4.86 0.08 -9.94 16 28 C -0.25 -2.81 9.65 -39.38 -0.38 -3.19 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 31 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 32 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 33 H 0.16 0.66 8.03 -52.48 -0.42 0.24 16 34 H 0.13 1.35 7.16 -51.93 -0.37 0.98 16 35 H 0.12 0.63 8.01 -51.93 -0.42 0.21 16 36 H 0.07 0.62 7.55 -51.93 -0.39 0.23 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 1.02 7.47 -51.92 -0.39 0.63 16 39 H 0.08 1.18 7.79 -51.93 -0.40 0.78 16 40 H 0.06 1.10 7.93 -51.93 -0.41 0.68 16 41 H 0.06 1.23 7.84 -51.93 -0.41 0.82 16 42 H 0.07 1.84 6.95 -51.93 -0.36 1.48 16 43 H 0.03 0.70 8.06 -51.92 -0.42 0.28 16 44 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.03 0.51 7.87 -51.93 -0.41 0.10 16 46 H 0.03 0.51 7.43 -51.93 -0.39 0.13 16 47 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 48 H 0.08 1.44 7.54 -51.93 -0.39 1.05 16 49 H 0.15 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 394.80 15.07 5.95 5.95 Total: -1.00 -37.68 394.80 -9.53 -47.21 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -7.68 Total: -1.83 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -2.15 Total: 7.52 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.80 Total: -56.56 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: 0.17 Total: -19.47 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.68 -9.53 -47.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041715384.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.436 kcal (2) G-P(sol) polarization free energy of solvation -37.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds