Wall clock time and date at job start Wed Apr 1 2020 05:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.40195 * 120.36257 * 2 1 4 4 C 1.35360 * 119.94236 * 179.76832 * 3 2 1 5 5 N 1.35754 * 120.69914 * 0.53261 * 4 3 2 6 6 C 1.46506 * 119.62264 * 179.72147 * 5 4 3 7 7 C 1.50706 * 109.46597 * 269.72765 * 6 5 4 8 8 O 1.21278 * 120.00077 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99527 * 179.97438 * 7 6 5 10 10 C 1.47607 * 126.92124 * 0.02725 * 9 7 6 11 11 C 1.54354 * 107.05274 * 154.97520 * 10 9 7 12 12 C 1.53092 * 104.62479 * 2.21995 * 11 10 9 13 13 C 1.53634 * 111.77385 * 259.50131 * 12 11 10 14 14 C 1.55179 * 101.41798 * 272.04968 * 13 12 11 15 15 N 1.47564 * 105.01106 * 324.52733 * 14 13 12 16 16 C 1.36933 * 125.67366 * 203.84141 * 15 14 13 17 17 H 1.08002 * 120.00011 * 170.08830 * 16 15 14 18 18 C 1.38813 * 120.00437 * 350.08503 * 16 15 14 19 19 N 1.31622 * 119.99600 * 350.39165 * 18 16 15 20 20 Si 1.86796 * 120.00135 * 170.38650 * 18 16 15 21 21 H 1.48497 * 109.46874 * 94.14625 * 20 18 16 22 22 H 1.48500 * 109.47323 * 214.14443 * 20 18 16 23 23 H 1.48497 * 109.47286 * 334.14495 * 20 18 16 24 24 C 1.47410 * 108.65001 * 23.85669 * 15 14 13 25 25 C 1.48407 * 126.91649 * 179.97438 * 9 7 6 26 26 C 1.34656 * 120.75507 * 359.44164 * 5 4 3 27 27 O 1.22060 * 119.98932 * 180.27698 * 26 5 4 28 28 C 1.36392 * 120.36851 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47267 * 269.97683 * 1 2 3 30 30 H 1.08999 * 109.47050 * 29.97650 * 1 2 3 31 31 H 1.09000 * 109.46726 * 149.97156 * 1 2 3 32 32 H 1.07993 * 120.03143 * 0.02562 * 3 2 1 33 33 H 1.08003 * 119.64573 * 180.24535 * 4 3 2 34 34 H 1.08994 * 109.47590 * 149.73001 * 6 5 4 35 35 H 1.08997 * 109.46979 * 29.72004 * 6 5 4 36 36 H 1.08995 * 109.92600 * 35.62245 * 10 9 7 37 37 H 1.09001 * 109.91764 * 274.32488 * 10 9 7 38 38 H 1.09007 * 110.40310 * 121.00486 * 11 10 9 39 39 H 1.08992 * 110.40324 * 243.31354 * 11 10 9 40 40 H 1.09002 * 111.03914 * 30.08682 * 13 12 11 41 41 H 1.08999 * 111.03514 * 154.01623 * 13 12 11 42 42 H 1.08999 * 110.33777 * 205.63622 * 14 13 12 43 43 H 1.09010 * 110.42038 * 83.45385 * 14 13 12 44 44 H 0.96996 * 119.99788 * 179.97438 * 19 18 16 45 45 H 1.08992 * 109.98839 * 238.53245 * 24 15 14 46 46 H 1.08997 * 110.01878 * 117.23762 * 24 15 14 47 47 H 1.09000 * 110.68304 * 99.19374 * 25 9 7 48 48 H 1.09004 * 110.68621 * 336.01697 * 25 9 7 49 49 H 1.08007 * 120.34744 * 359.95480 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2157 1.2097 0.0000 4 6 3.5693 1.1997 0.0047 5 7 4.2538 0.0274 -0.0013 6 6 5.7188 0.0443 -0.0022 7 6 6.2201 0.0501 -1.4234 8 8 5.4315 0.0406 -2.3447 9 7 7.5450 0.0658 -1.6705 10 6 8.6329 0.0783 -0.6729 11 6 9.8775 -0.5310 -1.3529 12 6 9.4299 -0.8237 -2.7873 13 6 9.0856 -2.3078 -2.9853 14 6 10.4703 -2.8964 -3.3649 15 7 11.1277 -1.8431 -4.1623 16 6 12.1252 -2.0412 -5.0793 17 1 12.4318 -1.2329 -5.7267 18 6 12.7424 -3.2807 -5.1768 19 7 12.5073 -4.2060 -4.2707 20 14 13.9064 -3.6356 -6.5940 21 1 15.3013 -3.3496 -6.1723 22 1 13.7903 -5.0637 -6.9842 23 1 13.5532 -2.7757 -7.7520 24 6 10.5322 -0.5422 -3.8073 25 6 8.2037 0.0730 -3.0003 26 6 3.6017 -1.1507 -0.0009 27 8 4.2312 -2.1965 -0.0013 28 6 2.1966 -1.1768 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8897 -0.5143 32 1 1.6822 2.1486 0.0004 33 1 4.1104 2.1345 0.0087 34 1 6.0927 -0.8415 0.5113 35 1 6.0721 0.9384 0.5114 36 1 8.3509 -0.5222 0.1918 37 1 8.8423 1.1026 -0.3647 38 1 10.7004 0.1839 -1.3499 39 1 10.1729 -1.4515 -0.8497 40 1 8.7127 -2.7496 -2.0612 41 1 8.3692 -2.4385 -3.7964 42 1 10.3471 -3.8010 -3.9604 43 1 11.0514 -3.1107 -2.4679 44 1 12.9382 -5.0723 -4.3390 45 1 10.1078 -0.0722 -4.6943 46 1 11.2893 0.1072 -3.3679 47 1 8.5085 1.0833 -3.2735 48 1 7.5448 -0.3498 -3.7587 49 1 1.6683 -2.1188 -0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041715384.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:54 Heat of formation + Delta-G solvation = -22.796273 kcal Electronic energy + Delta-G solvation = -30474.635589 eV Core-core repulsion = 26402.111767 eV Total energy + Delta-G solvation = -4072.523822 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.54519 -41.37663 -39.71107 -38.11348 -37.26947 -36.22280 -34.53202 -32.33669 -31.33730 -30.70927 -30.54496 -30.02180 -28.25314 -26.95043 -25.21890 -24.65462 -23.94415 -22.59913 -22.26754 -20.71569 -20.21180 -18.88021 -18.60945 -18.53152 -18.10134 -17.06471 -16.88713 -16.85000 -16.74648 -16.06975 -15.88263 -15.60927 -15.34231 -15.14777 -15.01821 -14.51494 -14.34107 -14.17645 -14.12947 -13.74048 -13.60285 -13.55314 -13.33749 -13.20212 -13.02268 -12.88097 -12.84938 -12.65782 -12.60723 -12.50314 -12.46219 -12.03337 -11.86344 -11.64261 -11.45743 -11.35496 -11.25731 -11.10333 -10.69670 -10.58038 -9.77368 -8.98731 -8.87301 -7.89604 -5.23674 -0.12008 0.92180 1.36380 1.44060 1.44791 1.46378 1.55629 1.97569 2.48265 2.66280 3.23656 3.33354 3.51160 3.60794 3.63527 3.70203 3.74503 3.80697 3.87633 4.06444 4.14744 4.23205 4.27868 4.32028 4.34401 4.39726 4.54568 4.57968 4.68952 4.77443 4.79197 4.83817 4.84315 4.88015 4.92665 4.98042 5.03325 5.11008 5.16032 5.24463 5.30105 5.39162 5.45294 5.49442 5.54997 5.67172 5.68924 6.05557 6.17797 6.41801 6.91664 6.99483 7.05784 7.74405 8.41764 9.22756 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025886 B = 0.002139 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.409001 B =13088.984187 C =13414.668251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.034 3.966 3 C -0.230 4.230 4 C 0.141 3.859 5 N -0.484 5.484 6 C 0.079 3.921 7 C 0.515 3.485 8 O -0.583 6.583 9 N -0.613 5.613 10 C 0.102 3.898 11 C -0.114 4.114 12 C -0.073 4.073 13 C -0.117 4.117 14 C 0.186 3.814 15 N -0.625 5.625 16 C -0.241 4.241 17 H 0.082 0.918 18 C -0.068 4.068 19 N -0.950 5.950 20 Si 0.978 3.022 21 H -0.283 1.283 22 H -0.297 1.297 23 H -0.269 1.269 24 C 0.149 3.851 25 C 0.130 3.870 26 C 0.500 3.500 27 O -0.614 6.614 28 C -0.295 4.295 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.185 0.815 33 H 0.206 0.794 34 H 0.123 0.877 35 H 0.181 0.819 36 H 0.094 0.906 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.044 0.956 42 H 0.022 0.978 43 H 0.005 0.995 44 H 0.247 0.753 45 H 0.029 0.971 46 H 0.041 0.959 47 H 0.099 0.901 48 H 0.055 0.945 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.636 19.609 16.077 32.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.030 3.970 3 C -0.252 4.252 4 C 0.015 3.985 5 N -0.193 5.193 6 C -0.046 4.046 7 C 0.304 3.696 8 O -0.463 6.463 9 N -0.346 5.346 10 C -0.019 4.019 11 C -0.152 4.152 12 C -0.074 4.074 13 C -0.155 4.155 14 C 0.061 3.939 15 N -0.351 5.351 16 C -0.370 4.370 17 H 0.100 0.900 18 C -0.261 4.261 19 N -0.598 5.598 20 Si 0.806 3.194 21 H -0.210 1.210 22 H -0.223 1.223 23 H -0.194 1.194 24 C 0.024 3.976 25 C 0.007 3.993 26 C 0.306 3.694 27 O -0.502 6.502 28 C -0.316 4.316 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.202 0.798 33 H 0.223 0.777 34 H 0.141 0.859 35 H 0.198 0.802 36 H 0.113 0.887 37 H 0.133 0.867 38 H 0.114 0.886 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.063 0.937 42 H 0.041 0.959 43 H 0.023 0.977 44 H 0.056 0.944 45 H 0.047 0.953 46 H 0.059 0.941 47 H 0.117 0.883 48 H 0.074 0.926 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.593 18.821 15.562 31.945 hybrid contribution 1.018 -1.448 -1.211 2.144 sum -19.575 17.374 14.351 29.849 Atomic orbital electron populations 1.21042 0.87985 1.04511 1.04392 1.20655 0.98534 0.92105 0.85718 1.21079 0.92456 0.99742 1.11942 1.22747 0.94428 0.89632 0.91697 1.45101 1.07880 1.07556 1.58777 1.21983 0.79049 1.09721 0.93818 1.20891 0.80823 0.75778 0.92133 1.90732 1.55473 1.52279 1.47802 1.48899 1.04685 1.71656 1.09357 1.22554 0.84606 1.03644 0.91080 1.22370 0.98107 1.02103 0.92623 1.21424 0.94642 0.94520 0.96848 1.22644 0.97031 0.95797 1.00040 1.21147 0.88781 0.91108 0.92857 1.44873 1.41277 1.02658 1.46332 1.19415 1.10153 0.97305 1.10105 0.89997 1.25689 1.01964 0.97162 1.01285 1.70165 1.48037 1.05651 1.35972 0.85082 0.78521 0.76702 0.79125 1.20971 1.22330 1.19360 1.21246 0.93128 0.88046 0.95187 1.22163 0.91763 1.00136 0.85248 1.17548 0.90368 0.82733 0.78751 1.90922 1.70283 1.32421 1.56542 1.21880 0.91537 1.00851 1.17351 0.88276 0.88603 0.91163 0.79762 0.77680 0.85913 0.80211 0.88747 0.86709 0.88587 0.91245 0.91211 0.93689 0.95913 0.97695 0.94393 0.95348 0.94144 0.88332 0.92625 0.84533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 10.03 71.24 0.71 -0.26 16 2 C 0.03 0.51 5.89 -19.82 -0.12 0.39 16 3 C -0.23 -2.38 9.71 22.08 0.21 -2.16 16 4 C 0.14 1.64 10.28 83.42 0.86 2.50 16 5 N -0.48 -9.99 2.07 -655.05 -1.36 -11.35 16 6 C 0.08 1.36 4.89 85.63 0.42 1.77 16 7 C 0.52 13.39 7.96 87.66 0.70 14.09 16 8 O -0.58 -21.01 16.65 -3.02 -0.05 -21.06 16 9 N -0.61 -14.38 3.31 -810.66 -2.68 -17.06 16 10 C 0.10 1.64 6.77 86.63 0.59 2.23 16 11 C -0.11 -2.76 6.04 31.08 0.19 -2.57 16 12 C -0.07 -2.36 0.68 -51.87 -0.04 -2.39 16 13 C -0.12 -4.71 5.94 31.55 0.19 -4.52 16 14 C 0.19 9.54 5.39 86.92 0.47 10.00 16 15 N -0.62 -32.48 3.41 -693.07 -2.36 -34.85 16 16 C -0.24 -13.67 10.24 84.03 0.86 -12.81 16 17 H 0.08 4.42 7.85 -2.91 -0.02 4.40 16 18 C -0.07 -3.94 5.40 84.86 0.46 -3.48 16 19 N -0.95 -58.54 10.68 21.65 0.23 -58.31 16 20 Si 0.98 46.60 29.56 68.60 2.03 48.63 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 24 C 0.15 5.88 6.51 86.14 0.56 6.44 16 25 C 0.13 3.65 5.91 86.14 0.51 4.16 16 26 C 0.50 14.86 7.40 84.82 0.63 15.49 16 27 O -0.61 -24.26 16.64 -5.51 -0.09 -24.35 16 28 C -0.29 -7.06 9.65 22.40 0.22 -6.84 16 29 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.10 0.39 8.10 -2.39 -0.02 0.37 16 31 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 32 H 0.19 0.43 8.06 -2.91 -0.02 0.41 16 33 H 0.21 0.40 8.03 -2.91 -0.02 0.38 16 34 H 0.12 2.37 7.16 -2.39 -0.02 2.36 16 35 H 0.18 0.80 8.01 -2.39 -0.02 0.78 16 36 H 0.09 1.19 7.55 -2.39 -0.02 1.17 16 37 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.10 2.07 7.47 -2.38 -0.02 2.06 16 39 H 0.07 1.89 7.79 -2.39 -0.02 1.87 16 40 H 0.07 2.65 7.93 -2.39 -0.02 2.63 16 41 H 0.04 1.93 7.84 -2.39 -0.02 1.91 16 42 H 0.02 1.33 6.95 -2.39 -0.02 1.32 16 43 H 0.01 0.28 8.06 -2.38 -0.02 0.26 16 44 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 45 H 0.03 1.11 7.87 -2.39 -0.02 1.09 16 46 H 0.04 1.50 7.43 -2.39 -0.02 1.49 16 47 H 0.10 2.31 8.09 -2.39 -0.02 2.29 16 48 H 0.06 1.91 7.54 -2.38 -0.02 1.89 16 49 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -91.86 394.80 4.07 -87.79 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.94 Total: 8.52 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: 7.41 Total: 22.04 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -6.17 Total: -121.57 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -0.14 Total: -45.41 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -91.86 4.07 -87.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041715384.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.997 kcal (2) G-P(sol) polarization free energy of solvation -91.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds