Wall clock time and date at job start Wed Apr 1 2020 03:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37997 * 120.82343 * 2 1 4 4 C 1.39123 * 119.26623 * 179.97438 * 3 2 1 5 5 O 1.35498 * 119.52654 * 179.97438 * 4 3 2 6 6 N 1.32437 * 120.94934 * 0.02562 * 4 3 2 7 7 C 1.31643 * 121.79850 * 359.69271 * 6 4 3 8 8 C 1.50701 * 119.68494 * 180.29305 * 7 6 4 9 9 C 1.39557 * 120.62581 * 0.59385 * 7 6 4 10 10 C 1.47614 * 120.49940 * 179.70266 * 9 7 6 11 11 O 1.21582 * 119.99608 * 269.71909 * 10 9 7 12 12 N 1.34777 * 120.00257 * 89.72478 * 10 9 7 13 13 C 1.48266 * 127.72406 * 0.02562 * 12 10 9 14 14 C 1.54760 * 104.67382 * 141.29040 * 13 12 10 15 15 C 1.52879 * 104.40643 * 23.63901 * 14 13 12 16 16 C 1.53707 * 111.74756 * 237.42374 * 15 14 13 17 17 C 1.54586 * 102.95098 * 273.44701 * 16 15 14 18 18 N 1.47139 * 107.32940 * 339.04176 * 17 16 15 19 19 C 1.36942 * 125.60313 * 179.08879 * 18 17 16 20 20 H 1.07998 * 119.99192 * 179.97438 * 19 18 17 21 21 C 1.38812 * 119.99950 * 359.97159 * 19 18 17 22 22 N 1.31615 * 120.00294 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99540 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47467 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46855 * 120.00091 * 23 21 19 26 26 H 1.48496 * 109.47277 * 239.99591 * 23 21 19 27 27 C 1.47708 * 108.78545 * 359.06280 * 18 17 16 28 28 C 1.48491 * 127.71944 * 180.02562 * 12 10 9 29 29 H 1.08996 * 109.47372 * 270.02319 * 1 2 3 30 30 H 1.08996 * 109.46932 * 30.02126 * 1 2 3 31 31 H 1.08999 * 109.47135 * 150.02320 * 1 2 3 32 32 H 1.08002 * 120.36139 * 359.95481 * 3 2 1 33 33 H 0.96702 * 114.00032 * 89.99894 * 5 4 3 34 34 H 1.08990 * 109.47590 * 270.29586 * 8 7 6 35 35 H 1.09000 * 109.46882 * 30.30101 * 8 7 6 36 36 H 1.09007 * 109.47114 * 150.29449 * 8 7 6 37 37 H 1.09005 * 110.39272 * 22.49972 * 13 12 10 38 38 H 1.08996 * 110.50143 * 260.14186 * 13 12 10 39 39 H 1.08998 * 110.44793 * 264.90340 * 14 13 12 40 40 H 1.09004 * 110.54857 * 142.42302 * 14 13 12 41 41 H 1.09002 * 110.74940 * 155.03206 * 16 15 14 42 42 H 1.08999 * 110.74824 * 31.86685 * 16 15 14 43 43 H 1.08997 * 109.86768 * 98.47246 * 17 16 15 44 44 H 1.08992 * 109.87275 * 219.45909 * 17 16 15 45 45 H 0.97001 * 120.00142 * 179.97438 * 22 21 19 46 46 H 1.09007 * 110.38406 * 141.40179 * 27 18 17 47 47 H 1.08995 * 110.38778 * 263.77636 * 27 18 17 48 48 H 1.08997 * 110.47466 * 99.56513 * 28 12 10 49 49 H 1.08996 * 110.47310 * 336.95014 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6048 1.1472 0.0005 5 8 4.3044 2.3077 0.0000 6 7 4.2548 -0.0067 0.0005 7 6 3.6204 -1.1601 0.0060 8 6 4.4080 -2.4450 0.0125 9 6 2.2256 -1.2044 -0.0003 10 6 1.5171 -2.4995 -0.0007 11 8 1.2258 -3.0326 -1.0539 12 7 1.1932 -3.0908 1.1663 13 6 1.4618 -2.5976 2.5384 14 6 0.1926 -2.9669 3.3432 15 6 -0.4231 -4.1324 2.5689 16 6 -1.8664 -3.8293 2.1358 17 6 -2.6959 -4.2658 3.3651 18 7 -1.8690 -5.2030 4.1415 19 6 -2.2353 -5.8053 5.3155 20 1 -1.5542 -6.4813 5.8109 21 6 -3.4819 -5.5469 5.8686 22 7 -4.3117 -4.7227 5.2650 23 14 -3.9818 -6.3691 7.4697 24 1 -2.8785 -7.2432 7.9429 25 1 -4.2631 -5.3301 8.4929 26 1 -5.2010 -7.1870 7.2466 27 6 -0.5791 -5.3878 3.4459 28 6 0.4874 -4.3820 1.3652 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6936 2.1313 -0.0007 33 1 4.5071 2.6451 0.8833 34 1 4.6026 -2.7570 -1.0135 35 1 5.3542 -2.2885 0.5304 36 1 3.8367 -3.2188 0.5254 37 1 1.6067 -1.5173 2.5322 38 1 2.3360 -3.0950 2.9585 39 1 -0.4973 -2.1236 3.3743 40 1 0.4574 -3.2785 4.3536 41 1 -2.1378 -4.4166 1.2586 42 1 -1.9956 -2.7647 1.9410 43 1 -2.9412 -3.3959 3.9743 44 1 -3.6112 -4.7590 3.0382 45 1 -5.1830 -4.5424 5.6514 46 1 0.2358 -5.4502 4.1673 47 1 -0.6072 -6.2834 2.8253 48 1 1.2005 -5.1764 1.5850 49 1 -0.1046 -4.6325 0.4850 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041838847.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:33 Heat of formation + Delta-G solvation = -31.963959 kcal Electronic energy + Delta-G solvation = -31204.952960 eV Core-core repulsion = 27132.031597 eV Total energy + Delta-G solvation = -4072.921363 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.15677 -41.09677 -39.70345 -38.13546 -37.19090 -35.39178 -34.47482 -33.01866 -31.77801 -30.78703 -30.00415 -29.11010 -28.89274 -27.24252 -25.81139 -24.26078 -23.86615 -22.40753 -22.10081 -20.89778 -20.19273 -19.42888 -18.85039 -18.34908 -18.26818 -17.24853 -16.77416 -16.64313 -16.56843 -15.75474 -15.66217 -15.33772 -15.19879 -14.90797 -14.53237 -14.36234 -14.28937 -14.19146 -13.99925 -13.86853 -13.74541 -13.38521 -13.27960 -13.19336 -13.12730 -12.94745 -12.92138 -12.76934 -12.62922 -12.51491 -12.30219 -11.96352 -11.81265 -11.54807 -11.39916 -11.33762 -11.22910 -10.67647 -10.64772 -10.54299 -9.90386 -9.82467 -8.84852 -7.81548 -5.16064 -0.34115 0.02563 1.36702 1.48014 1.48709 1.58634 1.77024 2.33428 2.52036 2.56570 3.24324 3.37023 3.37549 3.45267 3.55522 3.67408 3.71202 3.89322 3.95989 4.15675 4.23373 4.25667 4.29613 4.38117 4.39670 4.50520 4.57235 4.58530 4.61035 4.65225 4.70059 4.79117 4.82431 4.89879 4.91127 4.95996 5.01635 5.05587 5.08460 5.10084 5.21201 5.33518 5.39459 5.43508 5.50514 5.69452 5.81048 6.22608 6.40258 6.55131 6.79112 6.93917 7.13901 7.81557 8.46141 9.28947 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020409 B = 0.002547 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.640537 B =10989.761994 C =11235.689117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.010 3.990 3 C -0.188 4.188 4 C 0.330 3.670 5 O -0.487 6.487 6 N -0.527 5.527 7 C 0.187 3.813 8 C -0.109 4.109 9 C -0.201 4.201 10 C 0.599 3.401 11 O -0.573 6.573 12 N -0.607 5.607 13 C 0.110 3.890 14 C -0.105 4.105 15 C -0.072 4.072 16 C -0.116 4.116 17 C 0.192 3.808 18 N -0.624 5.624 19 C -0.233 4.233 20 H 0.085 0.915 21 C -0.068 4.068 22 N -0.952 5.952 23 Si 0.974 3.026 24 H -0.264 1.264 25 H -0.293 1.293 26 H -0.297 1.297 27 C 0.147 3.853 28 C 0.127 3.873 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.174 0.826 33 H 0.425 0.575 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.013 0.987 44 H -0.002 1.002 45 H 0.244 0.756 46 H 0.055 0.945 47 H 0.024 0.976 48 H 0.094 0.906 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.177 12.664 -7.941 22.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.002 3.998 3 C -0.209 4.209 4 C 0.152 3.848 5 O -0.298 6.298 6 N -0.248 5.248 7 C 0.049 3.951 8 C -0.166 4.166 9 C -0.206 4.206 10 C 0.387 3.613 11 O -0.453 6.453 12 N -0.339 5.339 13 C -0.012 4.012 14 C -0.143 4.143 15 C -0.074 4.074 16 C -0.155 4.155 17 C 0.067 3.933 18 N -0.350 5.350 19 C -0.362 4.362 20 H 0.103 0.897 21 C -0.261 4.261 22 N -0.602 5.602 23 Si 0.803 3.197 24 H -0.188 1.188 25 H -0.221 1.221 26 H -0.225 1.225 27 C 0.022 3.978 28 C 0.005 3.995 29 H 0.114 0.886 30 H 0.120 0.880 31 H 0.074 0.926 32 H 0.192 0.808 33 H 0.288 0.712 34 H 0.104 0.896 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.031 0.969 44 H 0.016 0.984 45 H 0.054 0.946 46 H 0.073 0.927 47 H 0.042 0.958 48 H 0.112 0.888 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 17.781 12.454 -9.030 23.512 hybrid contribution -1.804 -0.410 1.254 2.235 sum 15.977 12.044 -7.777 21.466 Atomic orbital electron populations 1.20976 0.88438 1.04224 1.04346 1.20425 0.97641 0.90755 0.90974 1.22096 0.93318 0.99976 1.05484 1.19456 0.87636 0.85138 0.92617 1.84684 1.75766 1.33145 1.36178 1.67025 1.42335 0.98321 1.17083 1.21204 0.89050 0.93736 0.91117 1.20876 1.00792 0.90828 1.04135 1.20564 0.95076 0.93764 1.11219 1.17590 0.77801 0.83814 0.82056 1.90809 1.56515 1.66119 1.31835 1.49089 1.56426 1.22494 1.05892 1.22633 0.98215 1.00754 0.79614 1.22246 0.96170 0.97036 0.98875 1.21551 0.94512 0.96455 0.94897 1.22662 0.94592 1.00826 0.97378 1.20874 0.91436 0.91609 0.89422 1.44813 1.14255 1.52019 1.23897 1.19485 0.99127 1.20071 0.97550 0.89729 1.25595 0.97097 1.00967 1.02392 1.70194 1.08631 1.40463 1.40871 0.85063 0.77767 0.77495 0.79344 1.18834 1.22062 1.22476 1.21632 0.88114 0.94479 0.93556 1.22132 0.94771 0.85594 0.97007 0.88618 0.87974 0.92599 0.80812 0.71237 0.89626 0.88274 0.90374 0.89474 0.88511 0.91356 0.90035 0.92134 0.90856 0.96897 0.98357 0.94642 0.92674 0.95843 0.88795 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.10 9.69 71.24 0.69 -1.41 16 2 C 0.01 0.19 5.95 -19.43 -0.12 0.07 16 3 C -0.19 -2.96 9.72 22.43 0.22 -2.74 16 4 C 0.33 6.04 7.74 84.81 0.66 6.70 16 5 O -0.49 -6.86 13.55 -87.99 -1.19 -8.06 16 6 N -0.53 -11.57 10.29 -295.89 -3.04 -14.61 16 7 C 0.19 4.08 6.82 42.91 0.29 4.37 16 8 C -0.11 -1.96 9.78 71.24 0.70 -1.26 16 9 C -0.20 -4.57 4.55 -20.00 -0.09 -4.66 16 10 C 0.60 15.85 4.42 86.72 0.38 16.24 16 11 O -0.57 -19.66 17.39 -3.97 -0.07 -19.73 16 12 N -0.61 -14.19 3.33 -812.40 -2.70 -16.89 16 13 C 0.11 2.08 6.93 86.64 0.60 2.68 16 14 C -0.11 -2.64 6.28 31.15 0.20 -2.45 16 15 C -0.07 -2.14 0.82 -51.68 -0.04 -2.19 16 16 C -0.12 -4.09 5.83 31.37 0.18 -3.91 16 17 C 0.19 9.16 5.34 86.80 0.46 9.62 16 18 N -0.62 -30.27 3.41 -692.38 -2.36 -32.63 16 19 C -0.23 -12.54 10.28 84.03 0.86 -11.67 16 20 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 21 C -0.07 -3.77 5.49 84.86 0.47 -3.31 16 22 N -0.95 -56.43 10.31 21.65 0.22 -56.20 16 23 Si 0.97 44.86 29.55 68.60 2.03 46.89 16 24 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 26 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 27 C 0.15 5.37 6.07 86.46 0.52 5.90 16 28 C 0.13 3.25 6.19 85.99 0.53 3.78 16 29 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.10 1.26 8.10 -2.39 -0.02 1.24 16 31 H 0.05 1.23 7.18 -2.39 -0.02 1.22 16 32 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.43 1.46 9.06 -74.06 -0.67 0.79 16 34 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.38 7.06 -2.38 -0.02 1.36 16 37 H 0.09 1.45 7.45 -2.38 -0.02 1.43 16 38 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.07 1.81 7.51 -2.39 -0.02 1.79 16 40 H 0.08 2.17 7.55 -2.39 -0.02 2.16 16 41 H 0.06 2.10 7.73 -2.39 -0.02 2.08 16 42 H 0.07 2.36 7.71 -2.39 -0.02 2.34 16 43 H 0.01 0.69 7.39 -2.39 -0.02 0.67 16 44 H 0.00 -0.10 7.50 -2.39 -0.02 -0.12 16 45 H 0.24 14.16 8.31 -92.71 -0.77 13.39 16 46 H 0.06 1.87 7.76 -2.38 -0.02 1.85 16 47 H 0.02 0.86 8.06 -2.39 -0.02 0.84 16 48 H 0.09 2.08 7.95 -2.39 -0.02 2.06 16 49 H 0.07 2.10 7.35 -2.39 -0.02 2.08 16 Total: -1.00 -74.75 393.14 -0.30 -75.05 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.30 Total: 10.41 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 6.52 Total: 15.77 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -7.88 Total: -120.33 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -1.26 Total: -27.78 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -74.75 -0.30 -75.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041838847.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.084 kcal (2) G-P(sol) polarization free energy of solvation -74.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds