Wall clock time and date at job start Wed Apr 1 2020 06:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34867 * 119.10059 * 2 1 4 4 C 1.41672 * 119.33905 * 180.02562 * 3 2 1 5 5 O 1.22086 * 121.06758 * 179.97438 * 4 3 2 6 6 C 1.47101 * 117.86233 * 359.77097 * 4 3 2 7 7 C 1.47283 * 120.88202 * 180.24294 * 6 4 3 8 8 O 1.21619 * 120.00370 * 315.65107 * 7 6 4 9 9 N 1.34782 * 119.99932 * 135.65306 * 7 6 4 10 10 C 1.46592 * 119.75497 * 354.37471 * 9 7 6 11 11 C 1.53495 * 110.93369 * 227.68507 * 10 9 7 12 12 C 1.51989 * 107.36876 * 308.44332 * 11 10 9 13 13 H 1.09003 * 111.57157 * 302.99705 * 12 11 10 14 14 C 1.53701 * 114.99522 * 175.28943 * 12 11 10 15 15 C 1.55298 * 101.81360 * 206.55003 * 14 12 11 16 16 N 1.48159 * 107.04204 * 22.44615 * 15 14 12 17 17 C 1.36934 * 126.39668 * 184.97771 * 16 15 14 18 18 H 1.08006 * 120.00152 * 184.79401 * 17 16 15 19 19 C 1.38816 * 120.00029 * 4.80024 * 17 16 15 20 20 N 1.31610 * 120.00000 * 6.01135 * 19 17 16 21 21 Si 1.86801 * 119.99824 * 186.01250 * 19 17 16 22 22 H 1.48498 * 109.47299 * 94.99264 * 21 19 17 23 23 H 1.48501 * 109.46875 * 214.99033 * 21 19 17 24 24 H 1.48502 * 109.47334 * 334.99037 * 21 19 17 25 25 C 1.45503 * 107.20536 * 4.99926 * 16 15 14 26 26 H 1.09001 * 109.56578 * 85.84016 * 25 16 15 27 27 C 1.47799 * 119.75624 * 174.64974 * 9 7 6 28 28 C 1.37994 * 118.23474 * 0.46426 * 6 4 3 29 29 N 1.34341 * 120.37060 * 359.52254 * 28 6 4 30 30 C 1.46504 * 118.80456 * 180.27583 * 29 28 6 31 31 H 1.09000 * 109.47002 * 263.96471 * 1 2 3 32 32 H 1.08999 * 109.47026 * 23.95541 * 1 2 3 33 33 H 1.08999 * 109.47365 * 143.95680 * 1 2 3 34 34 H 1.07993 * 120.33358 * 0.04466 * 3 2 1 35 35 H 1.09001 * 109.22987 * 348.08434 * 10 9 7 36 36 H 1.09002 * 109.22731 * 107.44875 * 10 9 7 37 37 H 1.09005 * 109.97197 * 188.91271 * 11 10 9 38 38 H 1.08996 * 109.80817 * 67.88342 * 11 10 9 39 39 H 1.09000 * 110.96186 * 88.42251 * 14 12 11 40 40 H 1.09001 * 110.96071 * 324.68375 * 14 12 11 41 41 H 1.08997 * 109.92068 * 263.09398 * 15 14 12 42 42 H 1.09004 * 109.91999 * 141.79266 * 15 14 12 43 43 H 0.97007 * 120.00216 * 179.97438 * 20 19 17 44 44 H 1.08998 * 110.06846 * 247.94014 * 27 9 7 45 45 H 1.09008 * 110.06626 * 9.39524 * 27 9 7 46 46 H 1.08005 * 119.81204 * 179.79703 * 28 6 4 47 47 H 1.08997 * 109.47346 * 96.20097 * 30 29 28 48 48 H 1.09001 * 109.47140 * 216.20452 * 30 29 28 49 49 H 1.08999 * 109.46941 * 336.19924 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 -0.0006 5 8 4.2053 2.2327 -0.0010 6 6 4.2725 -0.1133 0.0041 7 6 5.7436 -0.1847 0.0092 8 8 6.3900 0.5367 -0.7262 9 7 6.3734 -1.0497 0.8288 10 6 5.5983 -1.8277 1.7998 11 6 6.2447 -1.7688 3.1908 12 6 7.7075 -2.1478 3.0278 13 1 7.8182 -3.1302 2.5686 14 6 8.5537 -2.0357 4.3060 15 6 9.9733 -1.7886 3.7268 16 7 9.7960 -1.2401 2.3620 17 6 10.7897 -0.9698 1.4595 18 1 10.5505 -0.4975 0.5181 19 6 12.1046 -1.3030 1.7544 20 7 12.3820 -1.9837 2.8461 21 14 13.4803 -0.7853 0.6017 22 1 14.0701 0.4920 1.0770 23 1 14.5290 -1.8365 0.5790 24 1 12.9357 -0.5999 -0.7674 25 6 8.3688 -1.0416 2.1600 26 1 8.0770 -0.0664 2.5499 27 6 7.8412 -1.2024 0.7460 28 6 3.5076 -1.2618 -0.0011 29 7 2.1664 -1.1847 -0.0006 30 6 1.3879 -2.4258 0.0000 31 1 -0.3633 -0.1080 1.0220 32 1 -0.3633 0.9391 -0.4173 33 1 -0.3634 -0.8309 -0.6047 34 1 1.6137 2.1083 0.0007 35 1 4.5871 -1.4248 1.8574 36 1 5.5521 -2.8664 1.4726 37 1 5.7515 -2.4732 3.8606 38 1 6.1659 -0.7585 3.5922 39 1 8.5218 -2.9633 4.8774 40 1 8.2292 -1.1925 4.9158 41 1 10.5243 -2.7279 3.6809 42 1 10.5085 -1.0711 4.3488 43 1 13.3008 -2.2169 3.0521 44 1 8.0934 -2.1912 0.3629 45 1 8.2614 -0.4326 0.0985 46 1 3.9899 -2.2282 -0.0012 47 1 1.1013 -2.6745 1.0217 48 1 0.4921 -2.2931 -0.6067 49 1 1.9913 -3.2332 -0.4149 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042102741.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:43:59 Heat of formation + Delta-G solvation = 11.811896 kcal Electronic energy + Delta-G solvation = -31349.701957 eV Core-core repulsion = 27278.678858 eV Total energy + Delta-G solvation = -4071.023099 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.53725 -39.87567 -38.32737 -37.59407 -35.31538 -33.78418 -32.98355 -32.67362 -31.19615 -29.68047 -28.62488 -27.92702 -27.24746 -24.96572 -24.40159 -23.43619 -22.24605 -21.83541 -20.20252 -19.88741 -19.22568 -18.03437 -17.45083 -16.72646 -16.53481 -16.37168 -15.85766 -15.41157 -14.91538 -14.59246 -14.50398 -14.29379 -14.08245 -13.91843 -13.81797 -13.61863 -13.54375 -13.31464 -13.10349 -12.89943 -12.79859 -12.55215 -12.35667 -12.22530 -12.09693 -11.81485 -11.47369 -11.23199 -10.91603 -10.73356 -10.69480 -10.08524 -9.92562 -9.89023 -9.80055 -9.60741 -9.57985 -9.42365 -9.23303 -8.58790 -8.32821 -8.09725 -6.78264 -5.63850 -3.00188 0.74954 1.07325 2.02732 2.94523 3.22732 3.47399 3.53209 3.55573 3.69327 3.77123 4.06473 4.22255 4.36091 4.45078 4.57415 4.63628 4.75263 4.85100 4.86793 4.90579 5.00240 5.06677 5.17606 5.24983 5.42589 5.44479 5.48738 5.56057 5.64244 5.73125 5.80748 5.96432 6.04868 6.10009 6.16216 6.19564 6.24260 6.29782 6.47334 6.51313 6.57073 6.62231 6.81248 6.84180 7.14217 7.53442 7.68600 7.73992 7.87366 8.07046 8.31006 8.53699 9.25320 9.88705 10.55392 11.45875 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018204 B = 0.002882 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.755970 B = 9711.869089 C =10533.903166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.155 3.845 3 C -0.271 4.271 4 C 0.409 3.591 5 O -0.489 6.489 6 C -0.286 4.286 7 C 0.575 3.425 8 O -0.517 6.517 9 N -0.607 5.607 10 C 0.106 3.894 11 C -0.120 4.120 12 C -0.113 4.113 13 H 0.077 0.923 14 C -0.137 4.137 15 C 0.170 3.830 16 N -0.591 5.591 17 C -0.225 4.225 18 H 0.080 0.920 19 C -0.008 4.008 20 N -0.922 5.922 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.155 3.845 26 H 0.025 0.975 27 C 0.120 3.880 28 C 0.163 3.837 29 N -0.473 5.473 30 C 0.050 3.950 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.152 0.848 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.027 0.973 43 H 0.251 0.749 44 H 0.071 0.929 45 H 0.093 0.907 46 H 0.171 0.829 47 H 0.083 0.917 48 H 0.092 0.908 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.436 -6.872 -1.658 31.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.050 3.950 3 C -0.295 4.295 4 C 0.295 3.705 5 O -0.371 6.371 6 C -0.297 4.297 7 C 0.362 3.638 8 O -0.392 6.392 9 N -0.342 5.342 10 C -0.017 4.017 11 C -0.158 4.158 12 C -0.133 4.133 13 H 0.095 0.905 14 C -0.175 4.175 15 C 0.046 3.954 16 N -0.316 5.316 17 C -0.353 4.353 18 H 0.098 0.902 19 C -0.204 4.204 20 N -0.569 5.569 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.205 1.205 25 C 0.046 3.954 26 H 0.042 0.958 27 C -0.002 4.002 28 C 0.034 3.966 29 N -0.161 5.161 30 C -0.092 4.092 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.169 0.831 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.045 0.955 43 H 0.061 0.939 44 H 0.089 0.911 45 H 0.111 0.889 46 H 0.188 0.812 47 H 0.101 0.899 48 H 0.111 0.889 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -29.599 -6.110 -2.093 30.295 hybrid contribution 0.762 0.058 -0.408 0.866 sum -28.837 -6.052 -2.501 29.571 Atomic orbital electron populations 1.21178 0.88101 1.05000 1.04064 1.20246 0.94798 0.85010 0.94996 1.22229 0.96176 0.97214 1.13865 1.18169 0.88337 0.87743 0.76211 1.90823 1.70050 1.33387 1.42840 1.22527 0.94717 0.95174 1.17315 1.17545 0.85867 0.79684 0.80674 1.90814 1.66627 1.40595 1.41151 1.48211 1.08404 1.41696 1.35918 1.21767 0.95049 0.95186 0.89729 1.21729 0.96564 1.02158 0.95357 1.22273 0.92753 0.99894 0.98339 0.90452 1.22704 0.98620 1.00101 0.96067 1.21649 0.90290 0.99277 0.84182 1.44181 0.98932 1.75353 1.13104 1.19086 0.86051 1.32590 0.97576 0.90231 1.24777 0.97303 1.00291 0.97992 1.69928 1.18022 1.42880 1.26096 0.86124 0.82020 0.77696 0.80175 1.21659 1.21841 1.20451 1.21023 0.86417 0.95475 0.92450 0.95756 1.21703 0.76451 1.02502 0.99572 1.22243 0.81876 1.00049 0.92394 1.42535 1.05233 1.07117 1.61211 1.22526 0.97756 0.84424 1.04468 0.89326 0.88917 0.90172 0.83074 0.90618 0.92063 0.90999 0.91373 0.92261 0.92688 0.91224 0.95472 0.93864 0.91124 0.88892 0.81238 0.89870 0.88922 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.27 9.34 36.00 0.34 0.07 16 2 C 0.16 1.01 6.64 -82.13 -0.55 0.47 16 3 C -0.27 -2.88 9.57 -39.47 -0.38 -3.26 16 4 C 0.41 6.63 6.94 -34.68 -0.24 6.39 16 5 O -0.49 -10.56 17.18 -1.52 -0.03 -10.59 16 6 C -0.29 -4.15 5.05 -102.72 -0.52 -4.67 16 7 C 0.58 10.74 7.12 -12.58 -0.09 10.65 16 8 O -0.52 -12.31 15.98 -1.10 -0.02 -12.33 16 9 N -0.61 -10.16 3.01 -174.30 -0.53 -10.68 16 10 C 0.11 1.26 4.86 -3.73 -0.02 1.25 16 11 C -0.12 -1.58 5.70 -26.99 -0.15 -1.73 16 12 C -0.11 -1.95 2.62 -89.51 -0.23 -2.18 16 13 H 0.08 1.35 8.13 -51.93 -0.42 0.93 16 14 C -0.14 -2.54 6.54 -25.15 -0.16 -2.70 16 15 C 0.17 4.17 5.56 -1.91 -0.01 4.16 16 16 N -0.59 -15.40 3.35 -162.91 -0.55 -15.94 16 17 C -0.22 -6.43 9.84 -15.06 -0.15 -6.58 16 18 H 0.08 2.26 7.49 -52.48 -0.39 1.87 16 19 C -0.01 -0.22 5.47 -17.43 -0.10 -0.31 16 20 N -0.92 -27.45 10.51 55.49 0.58 -26.87 16 21 Si 0.91 22.99 29.56 -169.99 -5.02 17.97 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.16 3.36 2.77 -67.83 -0.19 3.18 16 26 H 0.03 0.59 7.90 -51.93 -0.41 0.18 16 27 C 0.12 2.42 5.73 -3.95 -0.02 2.39 16 28 C 0.16 1.40 7.78 -16.54 -0.13 1.27 16 29 N -0.47 -2.66 2.97 -119.74 -0.36 -3.01 16 30 C 0.05 0.04 9.98 59.85 0.60 0.64 16 31 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 32 H 0.09 0.17 7.97 -51.93 -0.41 -0.24 16 33 H 0.08 0.02 6.01 -51.93 -0.31 -0.30 16 34 H 0.15 1.39 8.01 -52.49 -0.42 0.97 16 35 H 0.08 0.75 5.14 -51.93 -0.27 0.48 16 36 H 0.06 0.57 7.99 -51.93 -0.41 0.16 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.99 7.97 -51.93 -0.41 0.58 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 41 H 0.07 1.88 6.78 -51.93 -0.35 1.52 16 42 H 0.03 0.73 8.08 -51.93 -0.42 0.31 16 43 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.09 2.16 6.76 -51.92 -0.35 1.81 16 46 H 0.17 1.00 6.74 -52.48 -0.35 0.64 16 47 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 48 H 0.09 -0.08 5.95 -51.93 -0.31 -0.39 16 49 H 0.09 -0.03 7.85 -51.93 -0.41 -0.44 16 LS Contribution 381.29 15.07 5.75 5.75 Total: -1.00 -41.03 381.29 -9.50 -50.53 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -7.33 Total: -3.83 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: -2.00 Total: 9.01 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.84 Total: -56.50 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.04 Total: -22.92 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -41.03 -9.50 -50.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042102741.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.337 kcal (2) G-P(sol) polarization free energy of solvation -41.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds