Wall clock time and date at job start Wed Apr 1 2020 06:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34867 * 119.10059 * 2 1 4 4 C 1.41672 * 119.33905 * 180.02562 * 3 2 1 5 5 O 1.22086 * 121.06758 * 179.97438 * 4 3 2 6 6 C 1.47101 * 117.86233 * 359.77097 * 4 3 2 7 7 C 1.47283 * 120.88202 * 180.24294 * 6 4 3 8 8 O 1.21619 * 120.00370 * 315.65107 * 7 6 4 9 9 N 1.34782 * 119.99932 * 135.65306 * 7 6 4 10 10 C 1.46592 * 119.75497 * 354.37471 * 9 7 6 11 11 C 1.53495 * 110.93369 * 227.68507 * 10 9 7 12 12 C 1.51989 * 107.36876 * 308.44332 * 11 10 9 13 13 H 1.09003 * 111.57157 * 302.99705 * 12 11 10 14 14 C 1.53701 * 114.99522 * 175.28943 * 12 11 10 15 15 C 1.55298 * 101.81360 * 206.55003 * 14 12 11 16 16 N 1.48159 * 107.04204 * 22.44615 * 15 14 12 17 17 C 1.36934 * 126.39668 * 184.97771 * 16 15 14 18 18 H 1.08006 * 120.00152 * 184.79401 * 17 16 15 19 19 C 1.38816 * 120.00029 * 4.80024 * 17 16 15 20 20 N 1.31610 * 120.00000 * 6.01135 * 19 17 16 21 21 Si 1.86801 * 119.99824 * 186.01250 * 19 17 16 22 22 H 1.48498 * 109.47299 * 94.99264 * 21 19 17 23 23 H 1.48501 * 109.46875 * 214.99033 * 21 19 17 24 24 H 1.48502 * 109.47334 * 334.99037 * 21 19 17 25 25 C 1.45503 * 107.20536 * 4.99926 * 16 15 14 26 26 H 1.09001 * 109.56578 * 85.84016 * 25 16 15 27 27 C 1.47799 * 119.75624 * 174.64974 * 9 7 6 28 28 C 1.37994 * 118.23474 * 0.46426 * 6 4 3 29 29 N 1.34341 * 120.37060 * 359.52254 * 28 6 4 30 30 C 1.46504 * 118.80456 * 180.27583 * 29 28 6 31 31 H 1.09000 * 109.47002 * 263.96471 * 1 2 3 32 32 H 1.08999 * 109.47026 * 23.95541 * 1 2 3 33 33 H 1.08999 * 109.47365 * 143.95680 * 1 2 3 34 34 H 1.07993 * 120.33358 * 0.04466 * 3 2 1 35 35 H 1.09001 * 109.22987 * 348.08434 * 10 9 7 36 36 H 1.09002 * 109.22731 * 107.44875 * 10 9 7 37 37 H 1.09005 * 109.97197 * 188.91271 * 11 10 9 38 38 H 1.08996 * 109.80817 * 67.88342 * 11 10 9 39 39 H 1.09000 * 110.96186 * 88.42251 * 14 12 11 40 40 H 1.09001 * 110.96071 * 324.68375 * 14 12 11 41 41 H 1.08997 * 109.92068 * 263.09398 * 15 14 12 42 42 H 1.09004 * 109.91999 * 141.79266 * 15 14 12 43 43 H 0.97007 * 120.00216 * 179.97438 * 20 19 17 44 44 H 1.08998 * 110.06846 * 247.94014 * 27 9 7 45 45 H 1.09008 * 110.06626 * 9.39524 * 27 9 7 46 46 H 1.08005 * 119.81204 * 179.79703 * 28 6 4 47 47 H 1.08997 * 109.47346 * 96.20097 * 30 29 28 48 48 H 1.09001 * 109.47140 * 216.20452 * 30 29 28 49 49 H 1.08999 * 109.46941 * 336.19924 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 -0.0006 5 8 4.2053 2.2327 -0.0010 6 6 4.2725 -0.1133 0.0041 7 6 5.7436 -0.1847 0.0092 8 8 6.3900 0.5367 -0.7262 9 7 6.3734 -1.0497 0.8288 10 6 5.5983 -1.8277 1.7998 11 6 6.2447 -1.7688 3.1908 12 6 7.7075 -2.1478 3.0278 13 1 7.8182 -3.1302 2.5686 14 6 8.5537 -2.0357 4.3060 15 6 9.9733 -1.7886 3.7268 16 7 9.7960 -1.2401 2.3620 17 6 10.7897 -0.9698 1.4595 18 1 10.5505 -0.4975 0.5181 19 6 12.1046 -1.3030 1.7544 20 7 12.3820 -1.9837 2.8461 21 14 13.4803 -0.7853 0.6017 22 1 14.0701 0.4920 1.0770 23 1 14.5290 -1.8365 0.5790 24 1 12.9357 -0.5999 -0.7674 25 6 8.3688 -1.0416 2.1600 26 1 8.0770 -0.0664 2.5499 27 6 7.8412 -1.2024 0.7460 28 6 3.5076 -1.2618 -0.0011 29 7 2.1664 -1.1847 -0.0006 30 6 1.3879 -2.4258 0.0000 31 1 -0.3633 -0.1080 1.0220 32 1 -0.3633 0.9391 -0.4173 33 1 -0.3634 -0.8309 -0.6047 34 1 1.6137 2.1083 0.0007 35 1 4.5871 -1.4248 1.8574 36 1 5.5521 -2.8664 1.4726 37 1 5.7515 -2.4732 3.8606 38 1 6.1659 -0.7585 3.5922 39 1 8.5218 -2.9633 4.8774 40 1 8.2292 -1.1925 4.9158 41 1 10.5243 -2.7279 3.6809 42 1 10.5085 -1.0711 4.3488 43 1 13.3008 -2.2169 3.0521 44 1 8.0934 -2.1912 0.3629 45 1 8.2614 -0.4326 0.0985 46 1 3.9899 -2.2282 -0.0012 47 1 1.1013 -2.6745 1.0217 48 1 0.4921 -2.2931 -0.6067 49 1 1.9913 -3.2332 -0.4149 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042102741.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:43:58 Heat of formation + Delta-G solvation = -19.072194 kcal Electronic energy + Delta-G solvation = -31351.041191 eV Core-core repulsion = 27278.678858 eV Total energy + Delta-G solvation = -4072.362334 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -42.36383 -41.19674 -39.69478 -38.87319 -36.87810 -34.81403 -34.32573 -33.65915 -32.89349 -31.04822 -30.24665 -28.82803 -27.65569 -26.59621 -25.80928 -24.66083 -23.54993 -22.77565 -21.82605 -21.42427 -20.51011 -19.06564 -18.58300 -18.25141 -17.47885 -17.29952 -16.95773 -16.62714 -16.53641 -16.09688 -15.77273 -15.71686 -15.40988 -15.05069 -14.89929 -14.76711 -14.38044 -14.30685 -13.93283 -13.82486 -13.79813 -13.78239 -13.56425 -13.29516 -13.11173 -13.10425 -12.79639 -12.66188 -12.54187 -12.42963 -12.12727 -12.00138 -11.82476 -11.53432 -11.38380 -11.18062 -11.05439 -10.78773 -10.45867 -10.34367 -9.71349 -9.04138 -8.93040 -7.87275 -5.25395 -0.12163 0.31779 1.39915 1.42293 1.45846 1.51483 1.62884 1.99103 2.46487 2.66685 3.27361 3.28375 3.41440 3.51615 3.62161 3.76687 3.82880 3.92891 3.96642 4.08321 4.23848 4.26499 4.31449 4.34721 4.48099 4.50931 4.52627 4.60804 4.69984 4.74527 4.77715 4.81996 4.86889 4.88207 4.91583 4.92078 5.09178 5.13522 5.19225 5.22455 5.32503 5.38258 5.48807 5.59421 5.61524 5.74242 5.79502 5.82235 6.18795 6.41632 7.05599 7.05821 7.19341 7.73443 8.40303 9.20520 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018204 B = 0.002882 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.755970 B = 9711.869089 C =10533.903166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.193 3.807 3 C -0.306 4.306 4 C 0.382 3.618 5 O -0.587 6.587 6 C -0.345 4.345 7 C 0.569 3.431 8 O -0.593 6.593 9 N -0.602 5.602 10 C 0.097 3.903 11 C -0.112 4.112 12 C -0.091 4.091 13 H 0.089 0.911 14 C -0.121 4.121 15 C 0.172 3.828 16 N -0.612 5.612 17 C -0.239 4.239 18 H 0.068 0.932 19 C -0.058 4.058 20 N -0.943 5.943 21 Si 0.970 3.030 22 H -0.291 1.291 23 H -0.284 1.284 24 H -0.274 1.274 25 C 0.144 3.856 26 H -0.009 1.009 27 C 0.132 3.868 28 C 0.218 3.782 29 N -0.453 5.453 30 C 0.032 3.968 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.153 0.847 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.125 0.875 38 H 0.048 0.952 39 H 0.094 0.906 40 H 0.062 0.938 41 H 0.043 0.957 42 H -0.013 1.013 43 H 0.249 0.751 44 H 0.080 0.920 45 H 0.043 0.957 46 H 0.213 0.787 47 H 0.112 0.888 48 H 0.119 0.881 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.209 -11.815 -1.002 38.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.085 3.915 3 C -0.330 4.330 4 C 0.277 3.723 5 O -0.477 6.477 6 C -0.355 4.355 7 C 0.359 3.641 8 O -0.474 6.474 9 N -0.336 5.336 10 C -0.023 4.023 11 C -0.150 4.150 12 C -0.111 4.111 13 H 0.107 0.893 14 C -0.159 4.159 15 C 0.047 3.953 16 N -0.337 5.337 17 C -0.368 4.368 18 H 0.085 0.915 19 C -0.251 4.251 20 N -0.592 5.592 21 Si 0.798 3.202 22 H -0.219 1.219 23 H -0.209 1.209 24 H -0.199 1.199 25 C 0.036 3.964 26 H 0.009 0.991 27 C 0.009 3.991 28 C 0.084 3.916 29 N -0.136 5.136 30 C -0.106 4.106 31 H 0.132 0.868 32 H 0.114 0.886 33 H 0.133 0.867 34 H 0.171 0.829 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.143 0.857 38 H 0.067 0.933 39 H 0.112 0.888 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.005 0.995 43 H 0.058 0.942 44 H 0.098 0.902 45 H 0.062 0.938 46 H 0.230 0.770 47 H 0.131 0.869 48 H 0.137 0.863 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -35.498 -11.143 -1.403 37.232 hybrid contribution 2.343 1.449 -0.595 2.818 sum -33.155 -9.693 -1.998 34.601 Atomic orbital electron populations 1.21413 0.83688 1.06778 1.06286 1.20838 0.97084 0.83810 0.89773 1.22056 0.93524 0.99690 1.17686 1.19006 0.90648 0.87472 0.75141 1.90763 1.71989 1.36017 1.48970 1.21978 0.92413 0.96767 1.24343 1.18307 0.87802 0.78427 0.79574 1.90754 1.68673 1.43578 1.44369 1.48265 1.06798 1.41918 1.36578 1.22253 0.95227 0.97072 0.87766 1.21756 0.93632 1.02474 0.97174 1.22211 0.94943 0.98182 0.95767 0.89291 1.22590 0.94426 1.02047 0.96833 1.21513 0.93853 0.96549 0.83352 1.44441 1.00551 1.75210 1.13463 1.19265 0.87396 1.32422 0.97760 0.91454 1.25515 0.99217 1.00752 0.99659 1.70114 1.18086 1.43668 1.27341 0.85191 0.79284 0.77154 0.78553 1.21875 1.20947 1.19934 1.21145 0.84801 0.95954 0.94465 0.99126 1.21263 0.79211 1.01048 0.97610 1.22618 0.82847 0.99306 0.86779 1.43226 1.04705 1.09100 1.56592 1.23165 0.98362 0.81872 1.07247 0.86772 0.88630 0.86711 0.82898 0.87865 0.87208 0.85701 0.93281 0.88786 0.91962 0.93869 0.99490 0.94189 0.90224 0.93812 0.77020 0.86938 0.86272 0.86587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.27 9.34 71.24 0.67 0.94 16 2 C 0.19 1.66 6.64 41.20 0.27 1.93 16 3 C -0.31 -6.49 9.57 22.34 0.21 -6.27 16 4 C 0.38 13.45 6.94 25.45 0.18 13.63 16 5 O -0.59 -28.99 17.18 0.49 0.01 -28.98 16 6 C -0.34 -10.06 5.05 -18.63 -0.09 -10.15 16 7 C 0.57 22.64 7.12 86.62 0.62 23.26 16 8 O -0.59 -31.73 15.98 1.99 0.03 -31.70 16 9 N -0.60 -20.30 3.01 -823.62 -2.48 -22.78 16 10 C 0.10 1.90 4.86 86.53 0.42 2.32 16 11 C -0.11 -2.50 5.70 30.43 0.17 -2.33 16 12 C -0.09 -2.98 2.62 -10.07 -0.03 -3.00 16 13 H 0.09 2.76 8.13 -2.39 -0.02 2.75 16 14 C -0.12 -4.33 6.54 31.62 0.21 -4.12 16 15 C 0.17 8.77 5.56 86.85 0.48 9.25 16 16 N -0.61 -33.73 3.35 -669.32 -2.24 -35.97 16 17 C -0.24 -14.57 9.84 84.03 0.83 -13.74 16 18 H 0.07 4.15 7.49 -2.91 -0.02 4.13 16 19 C -0.06 -3.50 5.47 84.86 0.46 -3.03 16 20 N -0.94 -58.55 10.51 21.65 0.23 -58.32 16 21 Si 0.97 49.32 29.56 68.60 2.03 51.35 16 22 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 23 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.27 -13.60 7.11 99.48 0.71 -12.89 16 25 C 0.14 6.55 2.77 45.59 0.13 6.68 16 26 H -0.01 -0.45 7.90 -2.39 -0.02 -0.46 16 27 C 0.13 5.66 5.73 85.73 0.49 6.15 16 28 C 0.22 2.73 7.78 84.25 0.66 3.38 16 29 N -0.45 -2.23 2.97 -532.76 -1.58 -3.81 16 30 C 0.03 -0.23 9.98 127.77 1.27 1.04 16 31 H 0.11 -0.60 8.14 -2.39 -0.02 -0.62 16 32 H 0.09 -0.11 7.97 -2.39 -0.02 -0.13 16 33 H 0.11 -0.92 6.01 -2.39 -0.01 -0.94 16 34 H 0.15 2.99 8.01 -2.91 -0.02 2.96 16 35 H 0.10 1.50 5.14 -2.39 -0.01 1.49 16 36 H 0.11 1.22 7.99 -2.39 -0.02 1.20 16 37 H 0.12 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.05 1.32 7.97 -2.39 -0.02 1.30 16 39 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 40 H 0.06 2.14 8.12 -2.39 -0.02 2.12 16 41 H 0.04 2.41 6.78 -2.39 -0.02 2.40 16 42 H -0.01 -0.76 8.08 -2.38 -0.02 -0.78 16 43 H 0.25 14.90 8.31 -92.70 -0.77 14.13 16 44 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 45 H 0.04 2.28 6.76 -2.38 -0.02 2.26 16 46 H 0.21 0.92 6.74 -2.91 -0.02 0.90 16 47 H 0.11 -1.22 8.14 -2.39 -0.02 -1.24 16 48 H 0.12 -1.33 5.95 -2.39 -0.01 -1.35 16 49 H 0.12 -1.18 7.85 -2.39 -0.02 -1.20 16 Total: -1.00 -111.96 381.29 3.90 -108.06 By element: Atomic # 1 Polarization: -4.76 SS G_CDS: 0.96 Total: -3.79 kcal Atomic # 6 Polarization: 18.98 SS G_CDS: 6.95 Total: 25.93 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -6.08 Total: -120.88 kcal Atomic # 8 Polarization: -60.71 SS G_CDS: 0.04 Total: -60.67 kcal Atomic # 14 Polarization: 49.32 SS G_CDS: 2.03 Total: 51.35 kcal Total: -111.96 3.90 -108.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042102741.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.990 kcal (2) G-P(sol) polarization free energy of solvation -111.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -108.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds