Wall clock time and date at job start Wed Apr 1 2020 05:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35922 * 116.99938 * 2 1 4 4 C 1.38846 * 120.40840 * 0.02562 * 3 2 1 5 5 N 1.31883 * 121.00217 * 179.97438 * 4 3 2 6 6 C 1.31677 * 121.94024 * 0.02562 * 5 4 3 7 7 C 1.39526 * 120.69168 * 0.02562 * 6 5 4 8 8 C 1.47856 * 120.53172 * 180.02562 * 7 6 5 9 9 O 1.21553 * 119.99835 * 125.13298 * 8 7 6 10 10 N 1.34773 * 120.00037 * 304.85473 * 8 7 6 11 11 C 1.47146 * 121.21418 * 3.58159 * 10 8 7 12 12 C 1.53335 * 107.71947 * 122.68599 * 11 10 8 13 13 C 1.53090 * 110.49915 * 57.56755 * 12 11 10 14 14 H 1.09003 * 113.05638 * 70.87339 * 13 12 11 15 15 C 1.56026 * 106.39772 * 195.29354 * 13 12 11 16 16 C 1.54505 * 102.61026 * 78.38251 * 15 13 12 17 17 N 1.47433 * 107.14964 * 22.84568 * 16 15 13 18 18 C 1.36933 * 126.06140 * 181.65671 * 17 16 15 19 19 H 1.08003 * 120.00175 * 174.72152 * 18 17 16 20 20 C 1.38811 * 120.00184 * 354.72477 * 18 17 16 21 21 N 1.31625 * 119.99604 * 5.56798 * 20 18 17 22 22 Si 1.86794 * 120.00293 * 185.56436 * 20 18 17 23 23 H 1.48494 * 109.47046 * 94.99552 * 22 20 18 24 24 H 1.48500 * 109.47306 * 214.99839 * 22 20 18 25 25 H 1.48504 * 109.47064 * 334.99446 * 22 20 18 26 26 C 1.46474 * 107.87672 * 1.62305 * 17 16 15 27 27 H 1.09002 * 108.41898 * 89.24206 * 26 17 16 28 28 C 1.46757 * 121.21434 * 183.85193 * 10 8 7 29 29 C 1.38848 * 120.40283 * 180.30288 * 3 2 1 30 30 C 1.50703 * 120.87854 * 0.02609 * 29 3 2 31 31 H 1.09002 * 109.47338 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46665 * 299.99391 * 1 2 3 33 33 H 1.08998 * 109.47493 * 59.99172 * 1 2 3 34 34 H 1.08007 * 119.49750 * 359.97438 * 4 3 2 35 35 H 1.07998 * 119.65723 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.76055 * 242.33287 * 11 10 8 37 37 H 1.09009 * 109.76244 * 3.09363 * 11 10 8 38 38 H 1.09004 * 109.39577 * 297.24655 * 12 11 10 39 39 H 1.09002 * 109.16631 * 177.75151 * 12 11 10 40 40 H 1.08998 * 110.78172 * 320.10298 * 15 13 12 41 41 H 1.09004 * 110.94409 * 196.74076 * 15 13 12 42 42 H 1.08995 * 109.90264 * 263.46111 * 16 15 13 43 43 H 1.09005 * 110.04741 * 142.30912 * 16 15 13 44 44 H 0.97004 * 119.99613 * 179.97438 * 21 20 18 45 45 H 1.09007 * 109.22822 * 352.84353 * 28 10 8 46 46 H 1.09008 * 109.22029 * 112.19938 * 28 10 8 47 47 H 1.09000 * 109.46913 * 274.88600 * 30 29 3 48 48 H 1.08997 * 109.47272 * 34.89041 * 30 29 3 49 49 H 1.09004 * 109.46853 * 154.89472 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2982 2.3809 0.0005 5 7 1.8847 3.5621 0.0010 6 6 3.1953 3.6891 0.0006 7 6 4.0199 2.5636 -0.0010 8 6 5.4912 2.7103 -0.0010 9 8 6.1561 2.1666 0.8591 10 7 6.0954 3.4422 -0.9578 11 6 5.3129 4.1703 -1.9691 12 6 5.7010 5.6512 -1.8821 13 6 7.2072 5.8241 -2.0946 14 1 7.5172 5.6394 -3.1232 15 6 7.5587 7.2632 -1.6050 16 6 7.5951 7.0975 -0.0693 17 7 7.8451 5.6713 0.2083 18 6 7.9197 5.0922 1.4469 19 1 8.0229 4.0208 1.5368 20 6 7.8625 5.8820 2.5870 21 7 7.6271 7.1727 2.4822 22 14 8.1197 5.1130 4.2698 23 1 9.5424 5.2602 4.6690 24 1 7.2534 5.7961 5.2638 25 1 7.7676 3.6714 4.2143 26 6 7.9989 4.9836 -1.0758 27 1 9.0505 5.0167 -1.3605 28 6 7.5580 3.5373 -1.0327 29 6 3.4321 1.2935 -0.0063 30 6 4.2810 0.0483 -0.0139 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 0.2197 2.3226 0.0005 35 1 3.6367 4.6748 0.0006 36 1 5.5434 3.7839 -2.9619 37 1 4.2484 4.0538 -1.7656 38 1 5.4296 6.0395 -0.9004 39 1 5.1633 6.2077 -2.6499 40 1 6.7845 7.9718 -1.8992 41 1 8.5317 7.5767 -1.9834 42 1 6.6385 7.3968 0.3590 43 1 8.3965 7.7038 0.3531 44 1 7.5868 7.7246 3.2789 45 1 7.9944 3.0548 -0.1581 46 1 7.9050 3.0292 -1.9326 47 1 4.4181 -0.3041 1.0084 48 1 3.7864 -0.7250 -0.6016 49 1 5.2525 0.2736 -0.4539 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042115735.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:34 Heat of formation + Delta-G solvation = 5.158785 kcal Electronic energy + Delta-G solvation = -32340.129909 eV Core-core repulsion = 28268.818309 eV Total energy + Delta-G solvation = -4071.311600 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.11685 -39.83365 -38.43150 -37.67913 -35.05504 -33.81371 -32.81161 -31.49312 -30.68251 -29.05094 -28.37231 -27.97946 -27.68826 -24.88447 -24.38119 -23.04333 -22.60906 -22.32918 -20.05275 -19.93204 -18.61001 -17.84203 -17.48564 -16.57961 -16.45317 -16.28353 -16.09795 -15.56435 -14.93623 -14.68311 -14.30704 -14.06112 -13.96390 -13.89986 -13.62581 -13.40109 -12.94557 -12.89343 -12.79167 -12.72931 -12.38189 -12.20622 -11.97266 -11.80027 -11.72305 -11.58216 -11.37308 -11.25275 -10.92535 -10.76754 -10.66578 -10.07754 -10.06871 -9.84764 -9.76379 -9.62389 -9.51000 -9.42668 -9.14798 -8.52710 -8.48622 -8.16633 -6.73176 -5.61760 -2.92999 0.75283 1.13766 2.79464 3.04380 3.41072 3.49988 3.55972 3.62505 3.66040 4.29868 4.41731 4.60495 4.62530 4.68214 4.77405 4.83148 5.00447 5.07924 5.13464 5.14462 5.27092 5.35597 5.48633 5.51780 5.54510 5.66067 5.69889 5.70803 5.73917 5.78673 5.96477 5.99333 6.07084 6.13986 6.15565 6.25130 6.30304 6.34704 6.44116 6.47496 6.63368 6.74067 6.92668 6.96625 7.06335 7.63095 7.69739 7.77395 7.81705 7.95925 8.33513 8.54454 9.32757 9.93629 10.57861 11.50853 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011957 B = 0.004137 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.165492 B = 6766.874647 C = 7726.853529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.067 3.933 4 C 0.030 3.970 5 N -0.453 5.453 6 C 0.103 3.897 7 C -0.130 4.130 8 C 0.571 3.429 9 O -0.517 6.517 10 N -0.585 5.585 11 C 0.102 3.898 12 C -0.122 4.122 13 C -0.102 4.102 14 H 0.076 0.924 15 C -0.144 4.144 16 C 0.177 3.823 17 N -0.588 5.588 18 C -0.215 4.215 19 H 0.084 0.916 20 C -0.006 4.006 21 N -0.924 5.924 22 Si 0.901 3.099 23 H -0.291 1.291 24 H -0.294 1.294 25 H -0.277 1.277 26 C 0.154 3.846 27 H 0.028 0.972 28 C 0.114 3.886 29 C -0.031 4.031 30 C -0.106 4.106 31 H 0.102 0.898 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.159 0.841 35 H 0.168 0.832 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.041 0.959 43 H 0.044 0.956 44 H 0.249 0.751 45 H 0.097 0.903 46 H 0.057 0.943 47 H 0.082 0.918 48 H 0.073 0.927 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.326 -10.189 -12.616 20.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.220 6.220 3 C 0.020 3.980 4 C -0.128 4.128 5 N -0.162 5.162 6 C -0.056 4.056 7 C -0.136 4.136 8 C 0.356 3.644 9 O -0.392 6.392 10 N -0.317 5.317 11 C -0.022 4.022 12 C -0.160 4.160 13 C -0.121 4.121 14 H 0.094 0.906 15 C -0.182 4.182 16 C 0.053 3.947 17 N -0.313 5.313 18 C -0.344 4.344 19 H 0.102 0.898 20 C -0.202 4.202 21 N -0.572 5.572 22 Si 0.732 3.268 23 H -0.218 1.218 24 H -0.220 1.220 25 H -0.203 1.203 26 C 0.045 3.955 27 H 0.045 0.955 28 C -0.009 4.009 29 C -0.040 4.040 30 C -0.162 4.162 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.176 0.824 35 H 0.185 0.815 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.115 0.885 46 H 0.075 0.925 47 H 0.101 0.899 48 H 0.091 0.909 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.405 -9.890 -11.890 19.826 hybrid contribution 0.254 -0.657 1.021 1.241 sum -12.151 -10.548 -10.869 19.417 Atomic orbital electron populations 1.23120 0.78131 1.04284 1.01578 1.86078 1.21411 1.25721 1.88764 1.19677 0.92166 0.85932 1.00254 1.23002 1.00513 0.87167 1.02085 1.67572 1.11880 1.25804 1.10969 1.22971 0.88227 0.98638 0.95749 1.20859 0.95554 0.93635 1.03508 1.17716 0.85917 0.79266 0.81453 1.90813 1.64988 1.47766 1.35672 1.47719 1.07368 1.47741 1.28904 1.21976 0.96000 0.92816 0.91360 1.21922 0.96209 0.94648 1.03228 1.22380 0.94854 0.97122 0.97785 0.90582 1.23160 0.99875 0.95245 0.99926 1.21232 1.00355 0.85582 0.87549 1.44297 1.83855 1.03621 0.99568 1.19099 1.42142 0.91902 0.81207 0.89825 1.24702 1.02345 0.95601 0.97538 1.69970 1.55963 1.04039 1.27244 0.86222 0.77436 0.78712 0.84457 1.21823 1.22025 1.20261 1.20690 0.96201 0.90439 0.88137 0.95483 1.21463 0.78731 0.98457 1.02282 1.19659 0.90829 0.95441 0.98077 1.20668 0.98585 0.93402 1.03543 0.87936 0.92375 0.92429 0.82355 0.81462 0.91603 0.90127 0.90019 0.91852 0.92298 0.92717 0.94064 0.93798 0.94079 0.88454 0.92476 0.89932 0.90850 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.82 101.05 0.99 1.14 16 2 O -0.31 -3.33 9.76 -19.49 -0.19 -3.52 16 3 C 0.07 0.86 6.68 -39.13 -0.26 0.60 16 4 C 0.03 0.37 10.21 -17.30 -0.18 0.19 16 5 N -0.45 -6.69 10.34 -12.80 -0.13 -6.82 16 6 C 0.10 1.62 8.60 -17.14 -0.15 1.47 16 7 C -0.13 -2.14 4.97 -104.84 -0.52 -2.67 16 8 C 0.57 10.81 6.18 -12.33 -0.08 10.73 16 9 O -0.52 -11.69 15.59 5.32 0.08 -11.61 16 10 N -0.59 -10.04 2.96 -174.90 -0.52 -10.56 16 11 C 0.10 1.40 5.86 -3.52 -0.02 1.38 16 12 C -0.12 -1.82 5.06 -26.51 -0.13 -1.95 16 13 C -0.10 -1.61 3.68 -88.44 -0.33 -1.94 16 14 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 15 C -0.14 -2.53 6.33 -24.32 -0.15 -2.69 16 16 C 0.18 4.16 4.62 -2.74 -0.01 4.14 16 17 N -0.59 -14.30 3.20 -164.42 -0.53 -14.82 16 18 C -0.22 -5.98 9.71 -15.06 -0.15 -6.13 16 19 H 0.08 2.39 6.46 -52.48 -0.34 2.05 16 20 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 21 N -0.92 -27.43 10.41 55.49 0.58 -26.85 16 22 Si 0.90 23.52 29.56 -169.99 -5.02 18.49 16 23 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 24 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 25 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 26 C 0.15 2.97 2.97 -68.30 -0.20 2.77 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 C 0.11 2.05 5.68 -4.78 -0.03 2.02 16 29 C -0.03 -0.46 5.96 -103.75 -0.62 -1.08 16 30 C -0.11 -1.41 9.12 36.01 0.33 -1.08 16 31 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.33 7.67 -51.92 -0.40 -0.07 16 33 H 0.06 0.29 7.67 -51.93 -0.40 -0.10 16 34 H 0.16 1.41 6.30 -52.48 -0.33 1.08 16 35 H 0.17 2.71 7.41 -52.49 -0.39 2.32 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.08 1.06 4.49 -51.92 -0.23 0.83 16 38 H 0.08 1.51 6.85 -51.93 -0.36 1.15 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.94 7.97 -51.93 -0.41 0.53 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.04 1.08 7.19 -51.93 -0.37 0.70 16 43 H 0.04 1.17 7.43 -51.93 -0.39 0.78 16 44 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 45 H 0.10 2.06 5.51 -51.93 -0.29 1.77 16 46 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 47 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.07 0.83 7.77 -51.93 -0.40 0.42 16 49 H 0.07 1.04 6.75 -51.93 -0.35 0.69 16 LS Contribution 377.00 15.07 5.68 5.68 Total: -1.00 -33.73 377.00 -8.82 -42.55 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -7.18 Total: 0.80 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -1.60 Total: 6.65 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.60 Total: -59.05 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.11 Total: -15.12 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.02 Total: 18.49 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.73 -8.82 -42.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042115735.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.713 kcal (2) G-P(sol) polarization free energy of solvation -33.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds