Wall clock time and date at job start Wed Apr 1 2020 05:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35923 * 117.00012 * 2 1 4 4 C 1.38853 * 120.40751 * 359.97438 * 3 2 1 5 5 N 1.31882 * 121.00082 * 180.02562 * 4 3 2 6 6 C 1.31680 * 121.94019 * 359.67840 * 5 4 3 7 7 C 1.39528 * 120.69362 * 0.58868 * 6 5 4 8 8 C 1.47854 * 120.53520 * 179.73266 * 7 6 5 9 9 O 1.21551 * 119.99684 * 234.25175 * 8 7 6 10 10 N 1.34774 * 120.00215 * 54.23808 * 8 7 6 11 11 C 1.46594 * 119.75078 * 355.99716 * 10 8 7 12 12 C 1.53888 * 110.70963 * 132.27484 * 11 10 8 13 13 C 1.51967 * 107.29135 * 51.80791 * 12 11 10 14 14 H 1.09000 * 111.02085 * 56.51345 * 13 12 11 15 15 C 1.53706 * 115.61594 * 184.24792 * 13 12 11 16 16 C 1.55350 * 101.90561 * 153.51313 * 15 13 12 17 17 N 1.48164 * 107.01577 * 337.90578 * 16 15 13 18 18 C 1.36929 * 126.39492 * 174.88915 * 17 16 15 19 19 H 1.08003 * 119.99780 * 185.53714 * 18 17 16 20 20 C 1.38818 * 120.00316 * 5.53691 * 18 17 16 21 21 N 1.31618 * 119.99414 * 354.64542 * 20 18 17 22 22 Si 1.86798 * 120.00051 * 174.92503 * 20 18 17 23 23 H 1.48505 * 109.46679 * 274.72777 * 22 20 18 24 24 H 1.48498 * 109.47272 * 34.72675 * 22 20 18 25 25 H 1.48497 * 109.47255 * 154.72929 * 22 20 18 26 26 C 1.45509 * 107.20124 * 354.62432 * 17 16 15 27 27 H 1.09001 * 109.57010 * 273.61087 * 26 17 16 28 28 C 1.46260 * 120.15150 * 176.11067 * 10 8 7 29 29 C 1.38851 * 120.40660 * 180.02562 * 3 2 1 30 30 C 1.50696 * 120.87544 * 0.02562 * 29 3 2 31 31 H 1.09005 * 109.46866 * 299.99765 * 1 2 3 32 32 H 1.09002 * 109.47361 * 59.99486 * 1 2 3 33 33 H 1.09001 * 109.47544 * 180.02562 * 1 2 3 34 34 H 1.07995 * 119.49868 * 0.02562 * 4 3 2 35 35 H 1.08000 * 119.65727 * 180.31230 * 6 5 4 36 36 H 1.08999 * 109.23657 * 11.95332 * 11 10 8 37 37 H 1.09003 * 109.19136 * 252.56638 * 11 10 8 38 38 H 1.08999 * 109.89003 * 292.35554 * 12 11 10 39 39 H 1.09007 * 109.89432 * 171.25550 * 12 11 10 40 40 H 1.08998 * 110.95516 * 271.84894 * 15 13 12 41 41 H 1.08996 * 110.95896 * 35.55099 * 15 13 12 42 42 H 1.08992 * 110.04111 * 218.50513 * 16 15 13 43 43 H 1.08999 * 109.82364 * 97.18452 * 16 15 13 44 44 H 0.97004 * 119.99245 * 179.97438 * 21 20 18 45 45 H 1.08994 * 109.62966 * 112.23169 * 28 10 8 46 46 H 1.09003 * 109.72175 * 351.16148 * 28 10 8 47 47 H 1.09000 * 109.47628 * 274.53997 * 30 29 3 48 48 H 1.08996 * 109.47762 * 34.54348 * 30 29 3 49 49 H 1.09001 * 109.47025 * 154.54236 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2981 2.3810 -0.0005 5 7 1.8846 3.5622 -0.0010 6 6 3.1952 3.6892 0.0052 7 6 4.0199 2.5636 0.0003 8 6 5.4911 2.7103 0.0014 9 8 6.1571 2.1625 -0.8552 10 7 6.0938 3.4516 0.9521 11 6 5.2809 4.1815 1.9296 12 6 5.8038 3.9447 3.3574 13 6 7.2927 4.2490 3.3493 14 1 7.4828 5.2623 2.9953 15 6 8.0340 3.9753 4.6677 16 6 9.4806 3.7028 4.1713 17 7 9.3821 3.2983 2.7494 18 6 10.4279 3.0608 1.8979 19 1 10.2389 2.8571 0.8542 20 6 11.7309 3.0817 2.3762 21 7 11.9690 3.4328 3.6221 22 14 13.1470 2.6190 1.2492 23 1 13.3248 1.1447 1.2575 24 1 12.8489 3.0739 -0.1326 25 1 14.3930 3.2706 1.7269 26 6 7.9667 3.1944 2.4286 27 1 7.6055 2.1993 2.6886 28 6 7.5532 3.5300 1.0073 29 6 3.4321 1.2936 -0.0005 30 6 4.2809 0.0484 -0.0017 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 0.2197 2.3227 -0.0005 35 1 3.6366 4.6748 0.0096 36 1 4.2479 3.8397 1.8643 37 1 5.3211 5.2473 1.7046 38 1 5.6389 2.9065 3.6453 39 1 5.2932 4.6093 4.0544 40 1 8.0012 4.8468 5.3216 41 1 7.6259 3.0981 5.1696 42 1 9.9310 2.9004 4.7554 43 1 10.0785 4.6101 4.2587 44 1 12.8795 3.4470 3.9564 45 1 7.8755 4.5396 0.7526 46 1 7.9867 2.8111 0.3120 47 1 4.4188 -0.2984 1.0224 48 1 3.7860 -0.7283 -0.5847 49 1 5.2520 0.2712 -0.4437 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042115736.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:38 Heat of formation + Delta-G solvation = 2.709804 kcal Electronic energy + Delta-G solvation = -31341.937485 eV Core-core repulsion = 27270.519690 eV Total energy + Delta-G solvation = -4071.417796 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 3.10 seconds Orbital eigenvalues (eV) -41.38028 -40.09038 -38.60057 -37.94240 -35.52931 -34.00371 -32.95023 -31.57000 -31.06894 -29.31482 -28.51282 -28.08520 -27.82774 -25.00063 -24.50111 -23.07603 -22.68644 -22.16010 -20.25088 -19.94857 -19.29743 -18.13502 -17.74087 -16.80992 -16.57098 -16.48218 -16.19689 -15.75785 -15.11723 -14.83663 -14.43943 -14.39255 -14.18602 -14.01825 -13.76489 -13.29572 -13.22332 -13.10058 -12.99717 -12.92591 -12.55798 -12.32974 -12.25582 -11.98157 -11.88540 -11.83859 -11.56964 -11.32390 -10.95923 -10.82264 -10.74520 -10.33711 -10.14117 -9.98280 -9.91113 -9.70339 -9.61782 -9.52658 -9.41512 -8.73995 -8.62393 -8.48605 -6.85451 -5.73042 -3.06185 0.49879 0.92064 2.48620 2.80626 3.09078 3.42590 3.42862 3.48182 3.49311 4.06111 4.20354 4.34868 4.47041 4.51009 4.58565 4.70967 4.82629 4.87252 4.94142 5.00249 5.10224 5.12821 5.31543 5.38194 5.46618 5.50079 5.55626 5.58720 5.66859 5.76797 5.84695 5.92213 5.96736 6.00516 6.06064 6.10617 6.15081 6.21003 6.36044 6.46259 6.54812 6.67232 6.73178 6.79491 7.03573 7.43337 7.54604 7.56277 7.59048 7.80830 8.15260 8.23104 9.18614 9.81695 10.48558 11.39799 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017287 B = 0.002871 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.325519 B = 9751.796312 C =10472.666854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.305 6.305 3 C 0.071 3.929 4 C 0.032 3.968 5 N -0.454 5.454 6 C 0.097 3.903 7 C -0.136 4.136 8 C 0.563 3.437 9 O -0.526 6.526 10 N -0.591 5.591 11 C 0.099 3.901 12 C -0.118 4.118 13 C -0.114 4.114 14 H 0.077 0.923 15 C -0.137 4.137 16 C 0.178 3.822 17 N -0.591 5.591 18 C -0.230 4.230 19 H 0.080 0.920 20 C -0.005 4.005 21 N -0.920 5.920 22 Si 0.909 3.091 23 H -0.288 1.288 24 H -0.280 1.280 25 H -0.291 1.291 26 C 0.157 3.843 27 H 0.025 0.975 28 C 0.114 3.886 29 C -0.023 4.023 30 C -0.125 4.125 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.104 0.896 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.041 0.959 43 H 0.051 0.949 44 H 0.252 0.748 45 H 0.072 0.928 46 H 0.093 0.907 47 H 0.078 0.922 48 H 0.077 0.923 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.429 -1.578 -2.679 24.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.217 6.217 3 C 0.023 3.977 4 C -0.125 4.125 5 N -0.163 5.163 6 C -0.062 4.062 7 C -0.142 4.142 8 C 0.349 3.651 9 O -0.402 6.402 10 N -0.323 5.323 11 C -0.024 4.024 12 C -0.157 4.157 13 C -0.134 4.134 14 H 0.096 0.904 15 C -0.176 4.176 16 C 0.054 3.946 17 N -0.316 5.316 18 C -0.358 4.358 19 H 0.097 0.903 20 C -0.201 4.201 21 N -0.567 5.567 22 Si 0.739 3.261 23 H -0.215 1.215 24 H -0.206 1.206 25 H -0.217 1.217 26 C 0.048 3.952 27 H 0.042 0.958 28 C -0.009 4.009 29 C -0.032 4.032 30 C -0.182 4.182 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.122 0.878 34 H 0.178 0.822 35 H 0.182 0.818 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.090 0.910 46 H 0.111 0.889 47 H 0.096 0.904 48 H 0.096 0.904 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -24.225 -1.334 -3.128 24.462 hybrid contribution 0.948 -0.780 -0.438 1.303 sum -23.277 -2.114 -3.566 23.643 Atomic orbital electron populations 1.23149 0.77932 1.04522 1.01579 1.86105 1.21557 1.25544 1.88515 1.19722 0.92203 0.86061 0.99669 1.23016 1.00618 0.87074 1.01823 1.67543 1.11704 1.25935 1.11085 1.22856 0.88456 0.98168 0.96747 1.20757 0.95158 0.93908 1.04351 1.17988 0.86264 0.78894 0.81958 1.90791 1.65161 1.47362 1.36924 1.47821 1.07868 1.47287 1.29350 1.21981 0.94686 0.96504 0.89195 1.21780 0.96740 1.02195 0.94979 1.22282 0.92845 1.00071 0.98156 0.90418 1.22723 0.98993 1.00059 0.95790 1.21548 0.89779 0.99478 0.83816 1.44151 0.98528 1.80318 1.08620 1.19024 0.84552 1.41455 0.90744 0.90263 1.24796 0.97301 1.01577 0.96460 1.69951 1.19256 1.53118 1.14407 0.86178 0.81907 0.78235 0.79742 1.21503 1.20613 1.21742 1.20968 0.87056 0.95503 0.91685 0.95759 1.21533 0.76525 1.02804 0.99995 1.19691 0.90871 0.95543 0.97116 1.20910 1.00446 0.93488 1.03323 0.92306 0.92358 0.87762 0.82175 0.81815 0.90118 0.91127 0.91438 0.90719 0.92199 0.92588 0.94092 0.93034 0.93726 0.90980 0.88880 0.90372 0.90373 0.88835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.82 101.05 0.99 1.11 16 2 O -0.31 -2.85 9.75 -19.50 -0.19 -3.04 16 3 C 0.07 0.76 6.68 -39.13 -0.26 0.50 16 4 C 0.03 0.31 10.21 -17.30 -0.18 0.13 16 5 N -0.45 -5.12 10.34 -12.80 -0.13 -5.25 16 6 C 0.10 1.11 8.65 -17.14 -0.15 0.96 16 7 C -0.14 -1.80 4.79 -104.84 -0.50 -2.30 16 8 C 0.56 8.91 6.60 -12.33 -0.08 8.83 16 9 O -0.53 -10.10 14.60 5.32 0.08 -10.02 16 10 N -0.59 -8.98 2.98 -175.10 -0.52 -9.50 16 11 C 0.10 1.18 5.28 -3.53 -0.02 1.16 16 12 C -0.12 -1.50 5.76 -26.79 -0.15 -1.65 16 13 C -0.11 -1.87 2.58 -89.51 -0.23 -2.10 16 14 H 0.08 1.31 8.12 -51.93 -0.42 0.89 16 15 C -0.14 -2.45 6.56 -25.12 -0.16 -2.61 16 16 C 0.18 4.20 5.44 -1.88 -0.01 4.19 16 17 N -0.59 -14.67 3.34 -162.86 -0.54 -15.22 16 18 C -0.23 -6.30 9.89 -15.06 -0.15 -6.45 16 19 H 0.08 2.13 7.39 -52.48 -0.39 1.74 16 20 C 0.00 -0.14 5.49 -17.43 -0.10 -0.23 16 21 N -0.92 -26.80 10.47 55.49 0.58 -26.22 16 22 Si 0.91 22.26 29.56 -169.99 -5.02 17.23 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 C 0.16 3.15 2.80 -67.82 -0.19 2.96 16 27 H 0.03 0.54 7.94 -51.93 -0.41 0.12 16 28 C 0.11 2.11 5.55 -4.79 -0.03 2.08 16 29 C -0.02 -0.30 5.96 -103.76 -0.62 -0.91 16 30 C -0.13 -1.57 9.49 36.00 0.34 -1.23 16 31 H 0.06 0.22 7.68 -51.93 -0.40 -0.18 16 32 H 0.06 0.22 7.67 -51.93 -0.40 -0.17 16 33 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.16 1.05 6.30 -52.49 -0.33 0.72 16 35 H 0.16 1.59 7.37 -52.49 -0.39 1.20 16 36 H 0.08 0.85 4.88 -51.93 -0.25 0.60 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.90 7.99 -51.93 -0.41 0.48 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 0.95 8.13 -51.93 -0.42 0.52 16 42 H 0.04 1.07 7.64 -51.93 -0.40 0.68 16 43 H 0.05 1.34 7.39 -51.93 -0.38 0.96 16 44 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.09 1.94 6.76 -51.93 -0.35 1.59 16 47 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 48 H 0.08 0.88 7.76 -51.93 -0.40 0.47 16 49 H 0.09 1.39 5.73 -51.93 -0.30 1.09 16 LS Contribution 379.85 15.07 5.72 5.72 Total: -1.00 -32.70 379.85 -8.85 -41.56 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.33 Total: 0.30 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -1.49 Total: 4.44 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -0.62 Total: -56.19 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.11 Total: -13.06 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.70 -8.85 -41.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042115736.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.267 kcal (2) G-P(sol) polarization free energy of solvation -32.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.10 seconds