Wall clock time and date at job start Wed Apr 1 2020 05:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35923 * 117.00012 * 2 1 4 4 C 1.38853 * 120.40751 * 359.97438 * 3 2 1 5 5 N 1.31882 * 121.00082 * 180.02562 * 4 3 2 6 6 C 1.31680 * 121.94019 * 359.67840 * 5 4 3 7 7 C 1.39528 * 120.69362 * 0.58868 * 6 5 4 8 8 C 1.47854 * 120.53520 * 179.73266 * 7 6 5 9 9 O 1.21551 * 119.99684 * 234.25175 * 8 7 6 10 10 N 1.34774 * 120.00215 * 54.23808 * 8 7 6 11 11 C 1.46594 * 119.75078 * 355.99716 * 10 8 7 12 12 C 1.53888 * 110.70963 * 132.27484 * 11 10 8 13 13 C 1.51967 * 107.29135 * 51.80791 * 12 11 10 14 14 H 1.09000 * 111.02085 * 56.51345 * 13 12 11 15 15 C 1.53706 * 115.61594 * 184.24792 * 13 12 11 16 16 C 1.55350 * 101.90561 * 153.51313 * 15 13 12 17 17 N 1.48164 * 107.01577 * 337.90578 * 16 15 13 18 18 C 1.36929 * 126.39492 * 174.88915 * 17 16 15 19 19 H 1.08003 * 119.99780 * 185.53714 * 18 17 16 20 20 C 1.38818 * 120.00316 * 5.53691 * 18 17 16 21 21 N 1.31618 * 119.99414 * 354.64542 * 20 18 17 22 22 Si 1.86798 * 120.00051 * 174.92503 * 20 18 17 23 23 H 1.48505 * 109.46679 * 274.72777 * 22 20 18 24 24 H 1.48498 * 109.47272 * 34.72675 * 22 20 18 25 25 H 1.48497 * 109.47255 * 154.72929 * 22 20 18 26 26 C 1.45509 * 107.20124 * 354.62432 * 17 16 15 27 27 H 1.09001 * 109.57010 * 273.61087 * 26 17 16 28 28 C 1.46260 * 120.15150 * 176.11067 * 10 8 7 29 29 C 1.38851 * 120.40660 * 180.02562 * 3 2 1 30 30 C 1.50696 * 120.87544 * 0.02562 * 29 3 2 31 31 H 1.09005 * 109.46866 * 299.99765 * 1 2 3 32 32 H 1.09002 * 109.47361 * 59.99486 * 1 2 3 33 33 H 1.09001 * 109.47544 * 180.02562 * 1 2 3 34 34 H 1.07995 * 119.49868 * 0.02562 * 4 3 2 35 35 H 1.08000 * 119.65727 * 180.31230 * 6 5 4 36 36 H 1.08999 * 109.23657 * 11.95332 * 11 10 8 37 37 H 1.09003 * 109.19136 * 252.56638 * 11 10 8 38 38 H 1.08999 * 109.89003 * 292.35554 * 12 11 10 39 39 H 1.09007 * 109.89432 * 171.25550 * 12 11 10 40 40 H 1.08998 * 110.95516 * 271.84894 * 15 13 12 41 41 H 1.08996 * 110.95896 * 35.55099 * 15 13 12 42 42 H 1.08992 * 110.04111 * 218.50513 * 16 15 13 43 43 H 1.08999 * 109.82364 * 97.18452 * 16 15 13 44 44 H 0.97004 * 119.99245 * 179.97438 * 21 20 18 45 45 H 1.08994 * 109.62966 * 112.23169 * 28 10 8 46 46 H 1.09003 * 109.72175 * 351.16148 * 28 10 8 47 47 H 1.09000 * 109.47628 * 274.53997 * 30 29 3 48 48 H 1.08996 * 109.47762 * 34.54348 * 30 29 3 49 49 H 1.09001 * 109.47025 * 154.54236 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2981 2.3810 -0.0005 5 7 1.8846 3.5622 -0.0010 6 6 3.1952 3.6892 0.0052 7 6 4.0199 2.5636 0.0003 8 6 5.4911 2.7103 0.0014 9 8 6.1571 2.1625 -0.8552 10 7 6.0938 3.4516 0.9521 11 6 5.2809 4.1815 1.9296 12 6 5.8038 3.9447 3.3574 13 6 7.2927 4.2490 3.3493 14 1 7.4828 5.2623 2.9953 15 6 8.0340 3.9753 4.6677 16 6 9.4806 3.7028 4.1713 17 7 9.3821 3.2983 2.7494 18 6 10.4279 3.0608 1.8979 19 1 10.2389 2.8571 0.8542 20 6 11.7309 3.0817 2.3762 21 7 11.9690 3.4328 3.6221 22 14 13.1470 2.6190 1.2492 23 1 13.3248 1.1447 1.2575 24 1 12.8489 3.0739 -0.1326 25 1 14.3930 3.2706 1.7269 26 6 7.9667 3.1944 2.4286 27 1 7.6055 2.1993 2.6886 28 6 7.5532 3.5300 1.0073 29 6 3.4321 1.2936 -0.0005 30 6 4.2809 0.0484 -0.0017 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 0.2197 2.3227 -0.0005 35 1 3.6366 4.6748 0.0096 36 1 4.2479 3.8397 1.8643 37 1 5.3211 5.2473 1.7046 38 1 5.6389 2.9065 3.6453 39 1 5.2932 4.6093 4.0544 40 1 8.0012 4.8468 5.3216 41 1 7.6259 3.0981 5.1696 42 1 9.9310 2.9004 4.7554 43 1 10.0785 4.6101 4.2587 44 1 12.8795 3.4470 3.9564 45 1 7.8755 4.5396 0.7526 46 1 7.9867 2.8111 0.3120 47 1 4.4188 -0.2984 1.0224 48 1 3.7860 -0.7283 -0.5847 49 1 5.2520 0.2712 -0.4437 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042115736.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:37 Heat of formation + Delta-G solvation = -18.765279 kcal Electronic energy + Delta-G solvation = -31342.868715 eV Core-core repulsion = 27270.519690 eV Total energy + Delta-G solvation = -4072.349025 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.33964 -41.21809 -39.82472 -38.90519 -37.00267 -34.91742 -34.71317 -32.97444 -32.32167 -30.70345 -30.08464 -28.92922 -28.46355 -26.57788 -26.01091 -24.18616 -23.77818 -23.27679 -21.80612 -21.46311 -20.51082 -19.16342 -18.58846 -18.50790 -17.66600 -17.39422 -16.96309 -16.94337 -16.77582 -16.19132 -15.87324 -15.69469 -15.30353 -15.17016 -14.85401 -14.72595 -14.41948 -14.30486 -14.00351 -13.89837 -13.82417 -13.61525 -13.56164 -13.15774 -13.08377 -13.00081 -12.75712 -12.74042 -12.55375 -12.34239 -12.13593 -12.01434 -11.74670 -11.56025 -11.47065 -11.33345 -11.03508 -10.72727 -10.58320 -10.45029 -9.77904 -9.49749 -8.90631 -7.88204 -5.22098 -0.38736 0.07032 1.36997 1.43287 1.45185 1.52964 1.78474 2.23667 2.48577 2.55430 3.19675 3.31020 3.41085 3.45051 3.50795 3.57788 3.75973 3.90012 3.96305 3.97701 4.14800 4.25337 4.26970 4.29973 4.38180 4.43349 4.47874 4.51269 4.56916 4.60742 4.62154 4.70730 4.79929 4.81262 4.87483 4.89713 4.99711 5.07351 5.09964 5.14733 5.21483 5.31938 5.35710 5.50129 5.57787 5.67430 5.76983 6.15370 6.18289 6.24269 6.71604 6.93680 7.07384 7.75687 8.43002 9.23355 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017287 B = 0.002871 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.325519 B = 9751.796312 C =10472.666854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.076 3.924 4 C 0.044 3.956 5 N -0.459 5.459 6 C 0.100 3.900 7 C -0.149 4.149 8 C 0.563 3.437 9 O -0.571 6.571 10 N -0.589 5.589 11 C 0.096 3.904 12 C -0.109 4.109 13 C -0.096 4.096 14 H 0.080 0.920 15 C -0.121 4.121 16 C 0.181 3.819 17 N -0.612 5.612 18 C -0.237 4.237 19 H 0.076 0.924 20 C -0.061 4.061 21 N -0.947 5.947 22 Si 0.969 3.031 23 H -0.288 1.288 24 H -0.272 1.272 25 H -0.291 1.291 26 C 0.148 3.852 27 H 0.008 0.992 28 C 0.128 3.872 29 C -0.044 4.044 30 C -0.120 4.120 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.121 0.879 34 H 0.197 0.803 35 H 0.182 0.818 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.115 0.885 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.002 0.998 43 H 0.019 0.981 44 H 0.247 0.753 45 H 0.071 0.929 46 H 0.058 0.942 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.595 -0.620 -2.483 28.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.028 3.972 4 C -0.114 4.114 5 N -0.168 5.168 6 C -0.058 4.058 7 C -0.154 4.154 8 C 0.351 3.649 9 O -0.451 6.451 10 N -0.320 5.320 11 C -0.026 4.026 12 C -0.147 4.147 13 C -0.116 4.116 14 H 0.098 0.902 15 C -0.159 4.159 16 C 0.057 3.943 17 N -0.337 5.337 18 C -0.366 4.366 19 H 0.094 0.906 20 C -0.254 4.254 21 N -0.596 5.596 22 Si 0.798 3.202 23 H -0.215 1.215 24 H -0.197 1.197 25 H -0.217 1.217 26 C 0.040 3.960 27 H 0.026 0.974 28 C 0.004 3.996 29 C -0.053 4.053 30 C -0.176 4.176 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.139 0.861 34 H 0.213 0.787 35 H 0.199 0.801 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.133 0.867 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.020 0.980 43 H 0.038 0.962 44 H 0.057 0.943 45 H 0.089 0.911 46 H 0.077 0.923 47 H 0.099 0.901 48 H 0.106 0.894 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -28.452 -0.364 -2.925 28.604 hybrid contribution 2.112 -1.186 -0.524 2.478 sum -26.340 -1.550 -3.450 26.611 Atomic orbital electron populations 1.23521 0.75457 1.06306 1.03012 1.86104 1.24080 1.24904 1.88136 1.19691 0.91430 0.87122 0.98946 1.23573 1.02148 0.86117 0.99536 1.67657 1.11273 1.26530 1.11335 1.23049 0.88476 0.98144 0.96104 1.20501 0.93133 0.94999 1.06772 1.18452 0.87499 0.77833 0.81160 1.90764 1.66518 1.49026 1.38777 1.47836 1.06488 1.47540 1.30117 1.22289 0.94961 0.97583 0.87725 1.21776 0.93642 1.02959 0.96365 1.22210 0.95155 0.98606 0.95620 0.90162 1.22593 0.94738 1.01770 0.96840 1.21362 0.93281 0.96485 0.83203 1.44409 1.00137 1.80147 1.08990 1.19298 0.85716 1.40443 0.91163 0.90620 1.25553 0.99594 1.02331 0.97915 1.70149 1.19147 1.54433 1.15842 0.85230 0.78946 0.77618 0.78418 1.21518 1.19702 1.21702 1.21106 0.84978 0.96088 0.93802 0.97428 1.21096 0.78954 1.01501 0.98032 1.19779 0.92132 0.95096 0.98266 1.20795 0.99180 0.94295 1.03344 0.90688 0.90958 0.86052 0.78662 0.80118 0.87977 0.88543 0.91894 0.86716 0.89417 0.91384 0.97959 0.96229 0.94336 0.91114 0.92306 0.90127 0.89415 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.82 113.37 1.11 1.18 16 2 O -0.32 -5.12 9.75 -92.68 -0.90 -6.03 16 3 C 0.08 1.44 6.68 22.56 0.15 1.60 16 4 C 0.04 0.68 10.21 84.83 0.87 1.55 16 5 N -0.46 -8.67 10.34 -194.40 -2.01 -10.68 16 6 C 0.10 2.02 8.65 85.03 0.74 2.76 16 7 C -0.15 -3.75 4.79 -20.01 -0.10 -3.85 16 8 C 0.56 18.00 6.60 86.79 0.57 18.57 16 9 O -0.57 -23.16 14.60 -3.88 -0.06 -23.22 16 10 N -0.59 -17.57 2.98 -826.18 -2.46 -20.03 16 11 C 0.10 1.97 5.28 86.66 0.46 2.42 16 12 C -0.11 -2.37 5.76 30.55 0.18 -2.19 16 13 C -0.10 -3.00 2.58 -10.08 -0.03 -3.02 16 14 H 0.08 2.51 8.12 -2.39 -0.02 2.49 16 15 C -0.12 -4.16 6.56 31.64 0.21 -3.96 16 16 C 0.18 8.88 5.44 86.87 0.47 9.36 16 17 N -0.61 -31.63 3.34 -669.18 -2.24 -33.87 16 18 C -0.24 -13.60 9.89 84.04 0.83 -12.76 16 19 H 0.08 4.27 7.39 -2.91 -0.02 4.25 16 20 C -0.06 -3.53 5.49 84.86 0.47 -3.06 16 21 N -0.95 -57.63 10.47 21.65 0.23 -57.40 16 22 Si 0.97 47.34 29.56 68.60 2.03 49.37 16 23 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 24 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 25 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 26 C 0.15 6.08 2.80 45.60 0.13 6.21 16 27 H 0.01 0.37 7.94 -2.39 -0.02 0.35 16 28 C 0.13 4.88 5.55 86.02 0.48 5.36 16 29 C -0.04 -1.07 5.96 -19.30 -0.12 -1.18 16 30 C -0.12 -3.06 9.49 71.23 0.68 -2.39 16 31 H 0.07 0.24 7.68 -2.38 -0.02 0.22 16 32 H 0.07 0.26 7.67 -2.39 -0.02 0.24 16 33 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.20 1.56 6.30 -2.91 -0.02 1.54 16 35 H 0.18 2.90 7.37 -2.91 -0.02 2.87 16 36 H 0.10 1.76 4.88 -2.39 -0.01 1.75 16 37 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.47 7.99 -2.39 -0.02 1.45 16 39 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 40 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.07 2.18 8.13 -2.39 -0.02 2.17 16 42 H 0.00 0.12 7.64 -2.39 -0.02 0.10 16 43 H 0.02 1.06 7.39 -2.39 -0.02 1.04 16 44 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 45 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 46 H 0.06 2.63 6.76 -2.39 -0.02 2.61 16 47 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.09 1.98 7.76 -2.39 -0.02 1.96 16 49 H 0.06 2.02 5.73 -2.39 -0.01 2.00 16 Total: -1.00 -76.98 379.85 2.64 -74.34 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.96 Total: 10.93 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 7.09 Total: 16.59 kcal Atomic # 7 Polarization: -115.50 SS G_CDS: -6.48 Total: -121.98 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.96 Total: -29.24 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -76.98 2.64 -74.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042115736.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.577 kcal (2) G-P(sol) polarization free energy of solvation -76.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds